Phylogenetic relationships among subgenera, species, and varieties of Japanese Salvia L. (Lamiaceae)

Journal of Plant Research

Volumn 124, Issue 2, 2011, Pages 245-252

  Takano, Atsuko ^a   Okada, Hiroshi ^b  

^a MUSEUM OF NATURE AND HUMAN ACTIVITIES   (Japan)

^b Osaka Prefecture University   (Japan)

Author keywords

cpDNA; Lamiaceae; nrDNA; Phylogenetics; Salvia

Indexed keywords

LAMIACEAE; MAGNOLIOPHYTA; SALVIA; SALVIA PLEBEIA;

EID: 79951768385     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-010-0367-9     Document Type: Article

References (32)

1. Alziar G (1988-1993) Catalogue synonymique des Salvia L. du monde (Lamiaceae). I.-VI. Biocosme Mesogéen 5(3-4): 87-136; 6(1-2, 4): 79-115, 163-204; 7(1-2): 59-109; 9(2-3): 413-497; 10(3-4): 33-117.
2. Baker FK, Lutzoni FM (2002) The utility of the incongruence length difference test. Syst Biol 51: 625-637.
3. Crassen-Bockhoff R, Wester P, Tweraser E (2003) The staminal lever mechanism in Salvia L. (Lamiaceae): a review. Plant Biol (Stuttgart) 5: 33-41.
4. Darlu P, Lecointre G (2002) When does the incongruence length difference test fail? Mol Biol Evol 19: 432-437.
5. Doyle JJ, Doyle JD (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 11-15.
6. Faegri K, van Der Pijl L (1979) The principles of pollination ecology. Pergamon Press, Oxford.
7. Farris JS, Kallersjo M, Kluge AG, Bult C (1994) Testing significance of incongruence. Cladistics 10: 315-319.
8. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
9. Grant KA, Grant V (1964) Mechanical isolation of Salvia apiana and Salvia mellifera (Labiatae). Evolution 18: 196-212.
10. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
11. Hasebe M, Omori T, Nakazawa M (1994) RbcL gene sequences provide evidence for the evolutionary lineages of leptosprangiate ferns. Proc Nat Acad Sci USA 91: 5730-5734.
12. Hihara S, Iwatsubo Y, Naruhashi N (2001) A new natural hybrid of Salvia (Lamiaceae) from Japan, Salvia × sakuensis. J Phytogeogr Tax 49: 163-170.
13. Huang T-G, Wu J-T (1998) Salvia. In: Editorial Committee of the Flora of Taiwan (eds) Flora of Taiwan, 2nd edn, vol 4. Editorial Committee of the Flora of Taiwan, Taipei, pp 516-529.
14. Huck RB (1992) Overview of pollination biology in the Lamiaceae. In: Harley RM, Reynolds T (eds) Advances in Labiatae science. Royal Botanic Garden, Kew, pp 167-181.
15. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogeny. Bioinformatics 17: 754-755.
16. Inoue K (1997) Salvia L. In: T. Shimizu (ed), Flora of Nagano Prefecture, pp 939-941 (in Japanese).
17. Inoue K, Ozawa M (1998) Taxonomic study of subgenus Salvia, Salvia (Lamiaceae). In: Proceedings of the 28th annual meeting of the Japan Society for Plant Systematics, pp 42 (in Japanese).
18. Li X-W, Hedge IC (1994) Salvia. In: Wu Z-Y, Raven PH (eds) Flora of China, vol 17, Verbenaceae through Solanaceae. Science Press, Beijing, pp 195-222.
19. Mickevich MF, Farris JS (1981) The implications of congruence in Menidia. Syst Zool l 30: 351-370.
20. Murata G, Yamazaki T (1993) Salvia L. In: Iwatsuki K, Yamazaki T, Boufford DE, Ohba H (eds) Flora of Japan IIIa. Kodansha, Tokyo, pp 302-307.
21. Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Center, Uppsala University.
22. Reith M, Baumann G, Classen-Bockhoff R, Speck T (2007) New insights into the functional morphology of the lever mechanism of Salvia pratensis (Lamiaceae). Ann Bot 100: 393-400.
23. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
24. Sudarmono (2007) Genetic differentiation among populations of Salvia spp. (Lamiaceae) in Japan and its biosystematic significance. Ph. D. thesis, submitted to Osaka City University.
25. Sudarmono, Okada H (2007) Speciation process of Salvia isensis (Lamiaceae), a species endemic to serpentine areas in the Ise-Tokai district, Japan, from the viewpoint of the contradictory phylogenetic trees generated from chloroplast and nuclear DNA. J Plant Res 120: 483-490.
26. Sudarmono, Okada H (2008) Genetic differentiations among the populations of Salviajaponica (Lamiaceae) and its related species. Hayati 15: 18-26.
27. Swofford DL (2003) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4. 0b10. Sinauer Associates, Sunderland.
28. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680.
29. Thunberg CP (1784) Salvia japonica. In: Murray JA (ed) Syst Veg, vol 14, p 72.
30. Walker JB, Sytsma KJ (2007) Staminal evolution in the genus Salvia (Lamiaceae): molecular phylogenetic evidence for multiple origins of the staminal lever. Ann Bot 100: 375-391.
31. Walker JB, Sytsma KJ, Treutlein J, Wink M (2004) Salvia (Lamiaceae) is not monophyletic: implications for the systematics, radiation, and ecological specializations of Salvia and tribe Mentheae. Am J Bot 91: 1115-1125.
32. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and amplifications. Academic Press, San Diego, pp 312-315.