Alterations in Human Liver Metabolome during Prolonged Cryostorage

Journal of Proteome Research

Volumn 14, Issue 7, 2015, Pages 2758-2768

  Abuja, Peter M ^a   Ehrhart, Friederike ^b   Schoen, Uwe ^b   Schmidt, Tomm ^b   Stracke, Frank ^b   Dallmann, Guido ^c   Friedrich, Torben ^c   Zimmermann, Heiko ^b   Zatloukal, Kurt ^a  

^a MEDICAL UNIVERSITY OF GRAZ   (Austria)

^b FRAUNHOFER INSTITUTE FOR BIOMEDICAL ENGINEERING   (Germany)

^c Biocrates Life Science   (Austria)

Author keywords

biobanking; metabolite stability; sample quality; tissue cryostorage

Indexed keywords

LIQUID NITROGEN; NITROGEN;

ARTICLE; CONTROLLED STUDY; CRYOPRESERVATION; HUMAN; HUMAN TISSUE; HYDROLYSIS; LIQUID CHROMATOGRAPHY; LIVER; MASS SPECTROMETRY; METABOLOME; PRIORITY JOURNAL; ROOM TEMPERATURE; SIMULATION; STORAGE TEMPERATURE; TISSUE PRESERVATION; METABOLISM; METABOLOMICS;

CHROMATOGRAPHY, LIQUID; CRYOPRESERVATION; HUMANS; LIVER; MASS SPECTROMETRY; METABOLOMICS;

EID: 84947281449     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/acs.jproteome.5b00025     Document Type: Article

References (19)

1. Kashofer, K.; Viertler, C.; Pichler, M.; Zatloukal, K. Quality control of RNA preservation and extraction from paraffin-embedded tissue: implications for rt-PCR and microarray analysis PLoS One 2013, 8 (7) e70714
2. Gundisch, S.; Hauck, S.; Sarioglu, H.; Schott, C.; Viertler, C.; Kap, M.; Schuster, T.; Reischauer, B.; Rosenberg, R.; Verhoef, C.; Mischinger, H. J.; Riegman, P.; Zatloukal, K.; Becker, K. F. Variability of protein and phosphoprotein levels in clinical tissue specimens during the preanalytical phase J. Proteome Res. 2012, 11 (12) 5748-5762
3. Gundisch, S.; Schott, C.; Wolff, C.; Tran, K.; Beese, C.; Viertler, C.; Zatloukal, K.; Becker, K. F. The PAXgene((R)) tissue system preserves phosphoproteins in human tissue specimens and enables comprehensive protein biomarker research PLoS One 2013, 8 (3) e60638
4. Viertler, C.; Groelz, D.; Gundisch, S.; Kashofer, K.; Reischauer, B.; Riegman, P. H.; Winther, R.; Wyrich, R.; Becker, K. F.; Oelmuller, U.; Zatloukal, K. A new technology for stabilization of biomolecules in tissues for combined histological and molecular analyses J. Mol. Diagn. 2012, 14 (5) 458-466
5. Hubel, A.; Spindler, R.; Skubitz, A. P. Storage of human biospecimens: selection of the optimal storage temperature Biopreserv. Biobanking 2014, 12 (3) 165-175
6. Steponkus, P. L.; Lynch, D. V. Freeze/thaw-induced destabilization of the plasma membrane and the effects of cold acclimation J. Bioenerg. Biomembr. 1989, 21 (1) 21-41
7. Crowe, J. H.; Carpenter, J. F.; Crowe, L. M.; Anchordoguy, T. J. Are Freezing and Dehydration Similar Stress Vectors? A Comparison of Modes of Interaction of Stabilizing Solutes with Biomolecules Cryobiology 1990, 27, 219-231
8. Ishibashi, N.; Shimamura, S. Bifidobacteria: research and development in Japan Food Technol. 1993, 47, 126-136
9. Bernini, P.; Bertini, I.; Luchinat, C.; Nincheri, P.; Staderini, S.; Turano, P. Standard operating procedures for pre-analytical handling of blood and urine for metabolomic studies and biobanks J. Biomol NMR 2011, 49 (3-4) 231-243
10. Unterwurzacher, I.; Koal, T.; Bonn, G. K.; Weinberger, K. M.; Ramsay, S. L. Rapid sample preparation and simultaneous quantitation of prostaglandins and lipoxygenase derived fatty acid metabolites by liquid chromatography-mass spectrometry from small sample volumes Clin. Chem. Lab. Med. 2008, 46 (11) 1589-1597
11. Kim, H.; Golub, G. H.; Park, H. Missing value estimation for DNA microarray gene expression data: local least squares imputation Bioinformatics 2005, 21 (2) 187-198
12. Stacklies, W.; Redestig, H.; Scholz, M.; Walther, D.; Selbig, J. pcaMethods - a bioconductor package providing PCA methods for incomplete data Bioinformatics 2007, 23 (9) 1164-1167
13. Johnson, W. E.; Li, C.; Rabinovic, A. Adjusting batch effects in microarray expression data using empirical Bayes methods Biostatistics 2007, 8 (1) 118-127
14. Benjamini, Y.; Hochberg, Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing J. R. Stat. Soc., Ser. B 1995, 57, 280-300
15. Germann, A.; Oh, Y. J.; Schmidt, T.; Schon, U.; Zimmermann, H.; von Briesen, H. Temperature fluctuations during deep temperature cryopreservation reduce PBMC recovery, viability and T-cell function Cryobiology 2013, 67 (2) 193-200
16. Korson, L.; Drost-Hansen, W.; Millero, F. J. Viscosity of Water at Various Temperatures J. Phys. Chem. 1969, 73 (1) 34-39
17. Eigen, M.; de Maeyer, L. Self-Dissociation and Protonic Charge Transport in Water and Ice Proc. Royal Soc. A 1958, 247 (1251) 505-533
18. Kreiner-Møller, A.; Stracke, F.; Zimmermann, H. Confocal Raman Microscopy as a Non-Invasive Tool to Investigate the Phase Composition of Frozen Complex Cryopreservation Media Cryo Lett. 2013, 34 (3) 248-260
19. Ragoonanan, V.; Hubel, A.; Aksan, A. Response of the cell membrane-cytoskeleton complex to osmotic and freeze/thaw stresses Cryobiology 2010, 61 (3) 335-344