Gene genealogies within mutant allelic classes

Genetics

Volumn 143, Issue 1, 1996, Pages 579-587

  Slatkin, Montgomery ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; CHROMOSOME SATELLITE; GENE LOCUS; GENEALOGY; GENETIC DISTANCE; GENETIC RECOMBINATION; MUTANT; MUTATION; NUCLEOTIDE SEQUENCE; POPULATION; PRIORITY JOURNAL;

ALLELES; MODELS, GENETIC; MODELS, STATISTICAL; MUTATION; POPULATION DENSITY; POPULATION GROWTH; PROBABILITY; TIME; VARIATION (GENETICS);

EID: 0029871684     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (28)

1. CLARK, A. G., 1993 Evolutionary inferences from molecular characterization of self-incompatibility alleles, pp. 79-108 in Mechanisms of Molecular Evolution, edited by N. TAKAHATA and A. G. CLARK. Sinauer Associates, Sunderland, MA.
2. DI RIENZO, A., A. C. PETERSON, J. C. GARZA, A. M. VALDES, M. SLATKIN et al. 1994 Mutational processes of simple sequence repeat loci in human populations. Proc. Natl. Acad. Sci. USA 91: 3166-3170.
3. ETHIER, S. N., and T. SHIGA, 1994 Neutral allelic genealogy, pp. 87-97 in Measure-Valued Processes, Stochastic Partial Differential Equations, and Interacting Systems, edited by D. A. DAWSON. CRM Proceedings and Lecture Notes, Vol. 5, American Mathematical Society, Providence, RI.
4. FELLER, W., 1957 An Introduction to Probability Theory and Its Applications, Ed. 2. Wiley, New York.
5. FREIMER, N. B., and M. SLATKIN, 1996 Microsatellites: evolution and mutational processes, pp. 51-72 in Variation in the Human Genome, CIBA Foundation Symposium 197, Wiley & Co., Chichester.
6. GARZA, J. C., M. SLATKIN and N. G. FREIMER, 1995 Mscrosatellite allele frequencies in humans and chimpanzees, with implications for constraints on allele size. Mol. Biol. Evol. 12: 594-603.
7. GRIFFITHS, R. C. and S. TAVARÉ, 1994 Sampling theory for neutral alleles in a varying environment. Phil. Trans. Roy Soc. Lond. B 344: 403-410.
8. HĀSTBACKA, J., A. DE LA CHAPELLE A., I. KAITILA, P. SISTONEN, A. WEAVER et al., 1992 Linkage disequilibrium mapping in isolated founder populations: diastrophic dysplasia in Finland. Nature Genet. 2: 204-211.
9. HUDSON, R. R., 1990 Gene genealogies and the coalescent process. Oxford Surveys in Evolutionary Biology 7: 1-44.
10. HUDSON R. R., and N. L. KAPLAN, 1986 On the divergence of alleles in nested subsamples from finite populations. Genetics 113: 1057-1076.
11. HUDSON, R. R., and N. L. KAPLAN, 1988 The coalescent process in models with selection and recombination. Genetics 120: 831-840
12. HUGHES A. L., and M. NEI, 1988 Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection. Nature 335: 167-70.
13. KAPLAN, N. L., T. DARDEN, and R. R. HUDSON, 1988 The coalescent process in models with selection. Genetics 120: 819-829
14. KINGMAN, J. F. C., 1982 The coalescent. Stochast. Proc. Appl. 13: 235-248.
15. KREITMAN, M., 1983 Nucleotide polymorphism at the alcohol dehydrogenase locus of Drosophila melanogaster Nature 304: 412-417.
16. LANDER E. S., and D. BOTSTEIN, 1989 Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
17. OHTA, T., and M. KIMURA, 1973 A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population. Genet. Res. 22: 201-204.
18. SAUNDERS, I. W., S. TAVARÉ, and G. A. WATTERSON, 1984 On the genealogy of nested subsamples from a haploid population. Adv. Appl. Prob. 16: 471-491.
19. SHRIVER, M. D., L. JIN, R. CHAKRABORTY, and E. BOERWINKLE, 1993 VNTR allele frequency distributions under the stepwise mutation model. Genetics 134: 983-993.
20. SLATKIN, M., and R. R. HUDSON, 1991 Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
21. TAVARÉ, S., 1984 Line-of-descent and genealogical processes, and their applications in population genetic models. Theor. Popul. Biol. 26: 119-164.
22. TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
23. VALDES, A. M., M. SLATKIN and N. B FREIMER, 1993 Allele frequencies at microsatellite loci: the stepwise mutation model revisited. Genetics 133: 737-749.
24. WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Pop. Biol. 7: 256-276.
25. WEBER, J. L., and C. WONG, 1993 Mutation of human short tandem repeats. Hum. Mol. Genet. 2: 1123-1128.
26. WEKEMANS, X., and M. SLATKIN, 1994 Gene and allelic genealogies at a gametophytic self-incompatability locus. Genetics 137: 1157-1165.
27. WOLFRAM, S., 1991 Mathematica: A System for Doing Mathematics by Computer. Addison Wesley, Redwood City, CA.
28. WRIGHT, S., 1938 Size of population and breeding structure in relation to evolution. Science 87: 430-431.