메뉴 건너뛰기




Volumn 43, Issue 14, 2015, Pages 7083-7095

The structure of Rpf2-Rrs1 explains its role in ribosome biogenesis

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME PROTEIN; RNA 5S; RPF2 PROTEIN; RRS1 PROTEIN; UNCLASSIFIED DRUG; FUNGAL PROTEIN; PROTEIN BINDING; RIBONUCLEOPROTEIN; RIBOSOMAL PROTEIN L11; RNA BINDING PROTEIN;

EID: 84946792425     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkv640     Document Type: Article
Times cited : (44)

References (48)
  • 1
    • 0038738334 scopus 로고    scopus 로고
    • Pre-ribosomes on the road from the nucleolus to the cytoplasm
    • Tschochner, H. and Hurt, E. (2003) Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends Cell Biol., 13, 255-263.
    • (2003) Trends Cell Biol , vol.13 , pp. 255-263
    • Tschochner, H.1    Hurt, E.2
  • 4
    • 84866914596 scopus 로고    scopus 로고
    • Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae
    • Talkish, J., Zhang, J., Jakovljevic, J., Horsey, E.W. and Woolford, J.L. (2012) Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae. Nucleic Acids Res., 40, 8646-8661.
    • (2012) Nucleic Acids Res , vol.40 , pp. 8646-8661
    • Talkish, J.1    Zhang, J.2    Jakovljevic, J.3    Horsey, E.W.4    Woolford, J.L.5
  • 6
    • 0035370085 scopus 로고    scopus 로고
    • The Brix domain protein family-A key to the ribosomal biogenesis pathway?
    • Eisenhaber, F., Wechselberger, C. and Kreil, G. (2001) The Brix domain protein family-a key to the ribosomal biogenesis pathway? Trends Biochem. Sci., 26, 345-347.
    • (2001) Trends Biochem. Sci , vol.26 , pp. 345-347
    • Eisenhaber, F.1    Wechselberger, C.2    Kreil, G.3
  • 7
    • 0034745504 scopus 로고    scopus 로고
    • Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach
    • Koonin, E. V, Wolf, Y.I. and Aravind, L. (2001) Prediction of the archaeal exosome and its connections with the proteasome and the translation and transcription machineries by a comparative-genomic approach. Genome Res., 11, 240-252.
    • (2001) Genome Res , vol.11 , pp. 240-252
    • Koonin, E.V.1    Wolf, Y.I.2    Aravind, L.3
  • 8
    • 0035282210 scopus 로고    scopus 로고
    • The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component
    • Mayer, C., Suck, D. and Poch, O. (2001) The archaeal homolog of the Imp4 protein, a eukaryotic U3 snoRNP component. Trends Biochem. Sci., 26, 143-144.
    • (2001) Trends Biochem. Sci , vol.26 , pp. 143-144
    • Mayer, C.1    Suck, D.2    Poch, O.3
  • 9
    • 0033994223 scopus 로고    scopus 로고
    • RRS1, a conserved essential gene, encodes a novel regulatory protein required for ribosome biogenesis in saccharomyces cerevisiae
    • Tsuno, A., Miyoshi, K., Tsujii, R., Miyakawa, T. and Mizuta, K. (2000) RRS1, a conserved essential gene, encodes a novel regulatory protein required for ribosome biogenesis in saccharomyces cerevisiae. Mol. Cell. Biol., 20, 2066-2074.
    • (2000) Mol. Cell. Biol , vol.20 , pp. 2066-2074
    • Tsuno, A.1    Miyoshi, K.2    Tsujii, R.3    Miyakawa, T.4    Mizuta, K.5
  • 10
    • 23844511660 scopus 로고    scopus 로고
    • Synergistic defect in 60S ribosomal subunit assembly caused by a mutation of Rrs1p, a ribosomal protein L11-binding protein, and 3′-extension of 5S rRNA in Saccharomyces cerevisiae
    • Nariai, M., Tanaka, T., Okada, T., Shirai, C., Horigome, C. and Mizuta, K. (2005) Synergistic defect in 60S ribosomal subunit assembly caused by a mutation of Rrs1p, a ribosomal protein L11-binding protein, and 3′-extension of 5S rRNA in Saccharomyces cerevisiae. Nucleic Acids Res., 33, 4553-4562.
    • (2005) Nucleic Acids Res , vol.33 , pp. 4553-4562
    • Nariai, M.1    Tanaka, T.2    Okada, T.3    Shirai, C.4    Horigome, C.5    Mizuta, K.6
  • 11
    • 2342664094 scopus 로고    scopus 로고
    • Rrs1p, a ribosomal protein L11-binding protein, is required for nuclear export of the 60S pre-ribosomal subunit in Saccharomyces cerevisiae
    • Miyoshi, K., Shirai, C., Horigome, C., Takenami, K., Kawasaki, J. and Mizuta, K. (2004) Rrs1p, a ribosomal protein L11-binding protein, is required for nuclear export of the 60S pre-ribosomal subunit in Saccharomyces cerevisiae. FEBS Lett., 565, 106-110.
    • (2004) FEBS Lett , vol.565 , pp. 106-110
    • Miyoshi, K.1    Shirai, C.2    Horigome, C.3    Takenami, K.4    Kawasaki, J.5    Mizuta, K.6
  • 20
    • 57649089450 scopus 로고    scopus 로고
    • Screening of fusion partners for high yield expression and purification of bioactive viscotoxins
    • Bogomolovas, J., Simon, B., Sattler, M. and Stier, G. (2009) Screening of fusion partners for high yield expression and purification of bioactive viscotoxins. Protein Expr. Purif., 64, 16-23.
    • (2009) Protein Expr. Purif , vol.64 , pp. 16-23
    • Bogomolovas, J.1    Simon, B.2    Sattler, M.3    Stier, G.4
  • 21
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in high density shaking cultures
    • Studier, F.W. (2005) Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif., 41, 207-234.
    • (2005) Protein Expr. Purif , vol.41 , pp. 207-234
    • Studier, F.W.1
  • 22
    • 0027439390 scopus 로고
    • Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin
    • Van Duyne, G.D., Standaert, R.F., Karplus, P.A., Schreiber, S.L. and Clardy, J. (1993) Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin. J. Mol. Biol., 229, 105-124.
    • (1993) J. Mol. Biol , vol.229 , pp. 105-124
    • Van Duyne, G.D.1    Standaert, R.F.2    Karplus, P.A.3    Schreiber, S.L.4    Clardy, J.5
  • 26
  • 27
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S. and Thornton, J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Crystallogr., 26, 283-291.
    • (1993) J. Appl. Crystallogr , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 31
    • 0037166233 scopus 로고    scopus 로고
    • Normal assembly of 60 S ribosomal subunits is required for the signaling in response to a secretory defect in Saccharomyces cerevisiae
    • Miyoshi, K., Tsujii, R., Yoshida, H., Maki, Y., Wada, A., Matsui, Y., Toh-e, A. and Mizuta, K. (2002) Normal assembly of 60 S ribosomal subunits is required for the signaling in response to a secretory defect in Saccharomyces cerevisiae. J. Biol. Chem., 277, 18334-18339.
    • (2002) J. Biol. Chem , vol.277 , pp. 18334-18339
    • Miyoshi, K.1    Tsujii, R.2    Yoshida, H.3    Maki, Y.4    Wada, A.5    Matsui, Y.6    Toh-E, A.7    Mizuta, K.8
  • 33
    • 77954288774 scopus 로고    scopus 로고
    • Dali server: Conservation mapping in 3D
    • Holm, L. and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res., 38, W545-W549.
    • (2010) Nucleic Acids Res , vol.38 , pp. W545-W549
    • Holm, L.1    Rosenström, P.2
  • 34
    • 84936760336 scopus 로고    scopus 로고
    • Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis
    • Asano, N., Kato, K., Nakamura, A., Komoda, K., Tanaka, I. and Yao, M. (2015) Structural and functional analysis of the Rpf2-Rrs1 complex in ribosome biogenesis. Nucleic Acids Res., 43, 4746-4757.
    • (2015) Nucleic Acids Res , vol.43 , pp. 4746-4757
    • Asano, N.1    Kato, K.2    Nakamura, A.3    Komoda, K.4    Tanaka, I.5    Yao, M.6
  • 35
    • 0035702842 scopus 로고    scopus 로고
    • Brix from Xenopus laevis and Brx1p from yeast define a new family of proteins involved in the biogenesis of large ribosomal subunits
    • Kaser, A., Bogengruber, E., Hallegger, M., Doppler, E., Lepperdinger, G., Jantsch, M., Breitenbach, M. and Kreil, G. (2001) Brix from Xenopus laevis and Brx1p from yeast define a new family of proteins involved in the biogenesis of large ribosomal subunits. Biol. Chem., 382, 1637-1647.
    • (2001) Biol. Chem , vol.382 , pp. 1637-1647
    • Kaser, A.1    Bogengruber, E.2    Hallegger, M.3    Doppler, E.4    Lepperdinger, G.5    Jantsch, M.6    Breitenbach, M.7    Kreil, G.8
  • 36
    • 14644393728 scopus 로고    scopus 로고
    • Crystal structure of Mil (Mth680): Internal duplication and similarity between the Imp4/Brix domain and the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases
    • Ng, C.L., Waterman, D., Koonin, E. V, Antson, A.A. and Ortiz-Lombardía, M. (2005) Crystal structure of Mil (Mth680): internal duplication and similarity between the Imp4/Brix domain and the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases. EMBO Rep., 6, 140-146.
    • (2005) EMBO Rep , vol.6 , pp. 140-146
    • Ng, C.L.1    Waterman, D.2    Koonin, E.V.3    Antson, A.A.4    Ortiz-Lombardía, M.5
  • 37
    • 84891811692 scopus 로고    scopus 로고
    • SCOPe: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures
    • Fox, N.K., Brenner, S.E. and Chandonia, J.-M. (2014) SCOPe: Structural Classification of Proteins-extended, integrating SCOP and ASTRAL data and classification of new structures. Nucleic Acids Res., 42, D304-D309.
    • (2014) Nucleic Acids Res , vol.42 , pp. D304-D309
    • Fox, N.K.1    Brenner, S.E.2    Chandonia, J.-M.3
  • 38
    • 0028169619 scopus 로고
    • Crystallisation of the glycyl-tRNA synthetase from Thermus thermophilus and initial crystallographic data
    • Logan, D.T., Cura, V., Touzel, J.P., Kern, D. and Moras, D. (1994) Crystallisation of the glycyl-tRNA synthetase from Thermus thermophilus and initial crystallographic data. J. Mol. Biol., 241, 732-735.
    • (1994) J. Mol. Biol , vol.241 , pp. 732-735
    • Logan, D.T.1    Cura, V.2    Touzel, J.P.3    Kern, D.4    Moras, D.5
  • 39
    • 0027851759 scopus 로고
    • Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: An update
    • Cusack, S. (1993) Sequence, structure and evolutionary relationships between class 2 aminoacyl-tRNA synthetases: an update. Biochimie, 75, 1077-1081.
    • (1993) Biochimie , vol.75 , pp. 1077-1081
    • Cusack, S.1
  • 40
    • 0036183980 scopus 로고    scopus 로고
    • The sigma(70)-like motif: A eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis
    • Wehner, K.A. and Baserga, S.J. (2002) The sigma(70)-like motif: a eukaryotic RNA binding domain unique to a superfamily of proteins required for ribosome biogenesis. Mol. Cell, 9, 329-339.
    • (2002) Mol. Cell , vol.9 , pp. 329-339
    • Wehner, K.A.1    Baserga, S.J.2
  • 41
    • 0034007990 scopus 로고    scopus 로고
    • Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution
    • Lu, M. and Steitz, T.A. (2000) Structure of Escherichia coli ribosomal protein L25 complexed with a 5S rRNA fragment at 1.8-A resolution. Proc. Natl. Acad. Sci. U.S.A., 97, 2023-2028.
    • (2000) Proc. Natl. Acad. Sci. U.S.A , vol.97 , pp. 2023-2028
    • Lu, M.1    Steitz, T.A.2
  • 42
    • 84897545031 scopus 로고    scopus 로고
    • SRP RNA remodeling by SRP68 explains its role in protein translocation
    • Grotwinkel, J.T., Wild, K., Segnitz, B. and Sinning, I. (2014) SRP RNA remodeling by SRP68 explains its role in protein translocation. Science, 344, 101-104.
    • (2014) Science , vol.344 , pp. 101-104
    • Grotwinkel, J.T.1    Wild, K.2    Segnitz, B.3    Sinning, I.4
  • 43
    • 0027370486 scopus 로고
    • Major groove accessibility of RNA
    • Weeks, K.M. and Crothers, D.M. (1993) Major groove accessibility of RNA. Science, 261, 1574-1577.
    • (1993) Science , vol.261 , pp. 1574-1577
    • Weeks, K.M.1    Crothers, D.M.2
  • 44
    • 84937579370 scopus 로고    scopus 로고
    • Structural basis for recognition of G-1-containing tRNA by histidyl-tRNA synthetase
    • Tian, Q., Wang, C., Liu, Y. and Xie, W. (2015) Structural basis for recognition of G-1-containing tRNA by histidyl-tRNA synthetase. Nucleic Acids Res., 43, 2980-2990.
    • (2015) Nucleic Acids Res , vol.43 , pp. 2980-2990
    • Tian, Q.1    Wang, C.2    Liu, Y.3    Xie, W.4
  • 46
    • 1942501618 scopus 로고    scopus 로고
    • Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation
    • Horsey, E.W., Jakovljevic, J., Miles, T.D., Harnpicharnchai, P. and Woolford, J.L. (2004) Role of the yeast Rrp1 protein in the dynamics of pre-ribosome maturation. RNA, 10, 813-827.
    • (2004) RNA , vol.10 , pp. 813-827
    • Horsey, E.W.1    Jakovljevic, J.2    Miles, T.D.3    Harnpicharnchai, P.4    Woolford, J.L.5
  • 47
    • 0023258697 scopus 로고
    • RRP1, a Saccharomyces cerevisiae gene affecting rRNA processing and production of mature ribosomal subunits
    • Fabian, G.R. and Hopper, a K. (1987) RRP1, a Saccharomyces cerevisiae gene affecting rRNA processing and production of mature ribosomal subunits. J. Bacteriol., 169, 1571-1578.
    • (1987) J. Bacteriol , vol.169 , pp. 1571-1578
    • Fabian, G.R.1    Hopper, A.K.2
  • 48
    • 79956159490 scopus 로고    scopus 로고
    • High throughput structural analysis of yeast ribosomes using hSHAPE
    • Leshin, J.A., Heselpoth, R., Belew, A.T. and Dinman, J. (2011) High throughput structural analysis of yeast ribosomes using hSHAPE. RNA Biol., 8, 478-487.
    • (2011) RNA Biol , vol.8 , pp. 478-487
    • Leshin, J.A.1    Heselpoth, R.2    Belew, A.T.3    Dinman, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.