메뉴 건너뛰기




Volumn 8, Issue 3, 2011, Pages 478-487

High throughput structural analysis of yeast ribosomes using hSHAPE

Author keywords

hSHAPE; Ribosome; rRNA; Structure

Indexed keywords

LARGE SUBUNIT RIBOSOMAL RNA; NUCLEOTIDE; PRIMER RNA; SMALL SUBUNIT RIBOSOMAL RNA; TRANS ACTING FACTOR; TRANSFER RNA; TRANSLATION TERMINATION FACTOR;

EID: 79956159490     PISSN: 15476286     EISSN: 15558584     Source Type: Journal    
DOI: 10.4161/rna.8.3.14453     Document Type: Article
Times cited : (25)

References (28)
  • 1
    • 71049158443 scopus 로고    scopus 로고
    • Comprehensive molecular structure of the eukaryotic ribosome
    • Taylor DJ, Devkota B, Huang AD, et al. Comprehensive molecular structure of the eukaryotic ribosome. Structure 2009; 17:1591-604.
    • (2009) Structure , vol.17 , pp. 1591-1604
    • Taylor, D.J.1    Devkota, B.2    Huang, A.D.3
  • 2
    • 33947240700 scopus 로고    scopus 로고
    • Ribosomal protein L3: Gatekeeper to the A-site
    • Meskauskas A, Dinman JD. Ribosomal protein L3: Gatekeeper to the A-site. Mol Cell 2007; 25:877-88.
    • (2007) Mol Cell , vol.25 , pp. 877-888
    • Meskauskas, A.1    Dinman, J.D.2
  • 3
    • 52949152433 scopus 로고    scopus 로고
    • ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis
    • Vasa SM, Guex N, Wilkinson KA, Weeks KM, Giddings MC. ShapeFinder: a software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 2008; 14:1979-90.
    • (2008) RNA , vol.14 , pp. 1979-1990
    • Vasa, S.M.1    Guex, N.2    Wilkinson, K.A.3    Weeks, K.M.4    Giddings, M.C.5
  • 5
    • 77952693978 scopus 로고    scopus 로고
    • Single Ribosome Dynamics and the Mechanism of Translation
    • Aitken CE, Petrov A, Puglisi JD. Single Ribosome Dynamics and the Mechanism of Translation. Annu Rev Biophys 2010; 39:491-513.
    • (2010) Annu Rev Biophys , vol.39 , pp. 491-513
    • Aitken, C.E.1    Petrov, A.2    Puglisi, J.D.3
  • 6
    • 77954650144 scopus 로고    scopus 로고
    • Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy
    • Fischer N, Konevega AL, Wintermeyer W, Rodnina MV, Stark H. Ribosome dynamics and tRNA movement by time-resolved electron cryomicroscopy. Nature 2010; 466:329-33.
    • (2010) Nature , vol.466 , pp. 329-333
    • Fischer, N.1    Konevega, A.L.2    Wintermeyer, W.3    Rodnina, M.V.4    Stark, H.5
  • 7
    • 68449092202 scopus 로고    scopus 로고
    • Architecture and secondary structure of an entire HIV-1 RNA genome
    • Watts JM, Dang KK, Gorelick RJ, et al. Architecture and secondary structure of an entire HIV-1 RNA genome. Nature 2009; 460:711-6.
    • (2009) Nature , vol.460 , pp. 711-716
    • Watts, J.M.1    Dang, K.K.2    Gorelick, R.J.3
  • 8
    • 85011939870 scopus 로고    scopus 로고
    • Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method
    • Leshin JA, Rakauskaite R, Dinman JD, Meskauskas A. Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method. RNA Biol 2010; 7:354-60.
    • (2010) RNA Biol , vol.7 , pp. 354-360
    • Leshin, J.A.1    Rakauskaite, R.2    Dinman, J.D.3    Meskauskas, A.4
  • 10
    • 33745621079 scopus 로고    scopus 로고
    • Probing the secondary structure of expansion segment ES6 in 18S ribosomal RNA
    • DOI 10.1021/bi052149z
    • Alkemar G, Nygard O. Probing the secondary structure of expansion segment ES6 in 18S ribosomal RNA. Biochemistry 2006; 45:8067-78. (Pubitemid 43993227)
    • (2006) Biochemistry , vol.45 , Issue.26 , pp. 8067-8078
    • Alkemar, G.1    Nygard, O.2
  • 13
    • 69249112231 scopus 로고    scopus 로고
    • Structures of the ribosome in intermediate states of ratcheting
    • Zhang W, Dunkle JA, Cate JH. Structures of the ribosome in intermediate states of ratcheting. Science 2009; 325:1014-7.
    • (2009) Science , vol.325 , pp. 1014-1017
    • Zhang, W.1    Dunkle, J.A.2    Cate, J.H.3
  • 15
    • 0031979738 scopus 로고    scopus 로고
    • Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA
    • DOI 10.1017/S1355838298972004
    • Tanaka I, Nakagawa A, Hosaka H, Wakatsuki S, Mueller F, Brimacombe R. Matching the crystallographic structure of ribosomal protein S7 to a three-dimensional model of the 16S ribosomal RNA. RNA 1998; 4:542-50. (Pubitemid 28225422)
    • (1998) RNA , vol.4 , Issue.5 , pp. 542-550
    • Tanaka, I.1    Nakagawa, A.2    Hosaka, H.3    Wakatsuki, S.4    Mueller, F.5    Brimacombe, R.6
  • 16
    • 78649426085 scopus 로고    scopus 로고
    • Crystal structure of the eukaryotic ribosome
    • Ben Shem A, Jenner L, Yusupova G, Yusupov M. Crystal structure of the eukaryotic ribosome. Science 2010; 330:1203-9.
    • (2010) Science , vol.330 , pp. 1203-1209
    • Ben Shem, A.1    Jenner, L.2    Yusupova, G.3    Yusupov, M.4
  • 17
    • 33845228894 scopus 로고    scopus 로고
    • An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome
    • Rakauskaite R, Dinman JD. An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome. Mol Cell Biol 2006; 26:8992-9002.
    • (2006) Mol Cell Biol , vol.26 , pp. 8992-9002
    • Rakauskaite, R.1    Dinman, J.D.2
  • 18
    • 77449133028 scopus 로고    scopus 로고
    • Elongation in translation as a dynamic interaction among the ribosome, tRNA and elongation factors EF-G and EF-Tu Q
    • Agirrezabala X, Frank J. Elongation in translation as a dynamic interaction among the ribosome, tRNA and elongation factors EF-G and EF-Tu Q. Rev Biophys 2009; 42:159-200.
    • (2009) Rev Biophys , vol.42 , pp. 159-200
    • Agirrezabala, X.1    Frank, J.2
  • 19
    • 0032849011 scopus 로고    scopus 로고
    • Identification of an RNA-protein bridge spanning the ribosomal subunit interface
    • DOI 10.1126/science.285.5436.2133
    • Culver GM, Cate JH, Yusupova GZ, Yusupov MM, Noller HF. Identification of an RNA-protein bridge spanning the ribosomal subunit interface. Science 1999; 285:2133-5. (Pubitemid 29451432)
    • (1999) Science , vol.285 , Issue.5436 , pp. 2133-2135
    • Culver, G.M.1    Cate, J.H.2    Yusupova, G.Z.3    Yusupov, M.M.4    Noller, H.F.5
  • 22
    • 78649892938 scopus 로고    scopus 로고
    • A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site
    • Meskauskas A, Dinman JD. A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site. Nucleic Acids Res 2010.
    • (2010) Nucleic Acids Res
    • Meskauskas, A.1    Dinman, J.D.2
  • 24
    • 70350602056 scopus 로고    scopus 로고
    • The structure of the ribosome with elongation factor G trapped in the post-translocational state
    • Gao YG, Selmer M, Dunham CM, Weixlbaumer A, Kelley AC, Ramakrishnan V. The structure of the ribosome with elongation factor G trapped in the post-translocational state. Science 2009; 326:694-9.
    • (2009) Science , vol.326 , pp. 694-699
    • Gao, Y.G.1    Selmer, M.2    Dunham, C.M.3    Weixlbaumer, A.4    Kelley, A.C.5    Ramakrishnan, V.6
  • 25
    • 1542319100 scopus 로고    scopus 로고
    • Structure of the signal recognition particle interacting with the elongation-arrested ribosome
    • DOI 10.1038/nature02342
    • Halic M, Becker T, Pool MR, et al. Structure of the signal recognition particle interacting with the elongation-arrested ribosome. Nature 2004; 427:808-14. (Pubitemid 38297736)
    • (2004) Nature , vol.427 , Issue.6977 , pp. 808-814
    • Halic, M.1    Becker, T.2    Pool, M.R.3    Spahn, C.M.T.4    Grassucci, R.A.5    Frank, J.6    Beckmann, R.7
  • 27
    • 34247162792 scopus 로고    scopus 로고
    • A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
    • DOI 10.1021/ja0704028
    • Mortimer SA, Weeks KM. A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J Am Chem Soc 2007; 129:4144-5. (Pubitemid 46595421)
    • (2007) Journal of the American Chemical Society , vol.129 , Issue.14 , pp. 4144-4145
    • Mortimer, S.A.1    Weeks, K.M.2
  • 28
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • Wilkinson KA, Merino EJ, Weeks KM. Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat Protoc 2006; 1:1610-6.
    • (2006) Nat Protoc , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.