-
1
-
-
0942301301
-
Epidemiology of conjugative plasmid-mediated AmpC beta-lactamases in the United States
-
Alvarez, M., Tran, J. H., Chow, N., and Jacoby, G. A. (2004). Epidemiology of conjugative plasmid-mediated AmpC beta-lactamases in the United States. Antimicrob. Agents Chemother. 48, 533-537. doi: 10.1128/AAC.48.2.533-537.2004
-
(2004)
Antimicrob. Agents Chemother
, vol.48
, pp. 533-537
-
-
Alvarez, M.1
Tran, J.H.2
Chow, N.3
Jacoby, G.A.4
-
2
-
-
0028946084
-
Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation
-
Amann, R. I., Ludwig, W., and Schleifer, K. H. (1995). Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation. Microbiol. Rev. 59, 143-169.
-
(1995)
Microbiol. Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
0020570355
-
Phenotypic reversal in dam mutants of Escherichia coli K-12 by a recombinant plasmid containing the dam+ gene
-
Arraj, J. A., and Marinus, M. G. (1983). Phenotypic reversal in dam mutants of Escherichia coli K-12 by a recombinant plasmid containing the dam+ gene. J. Bacteriol. 153, 562-565.
-
(1983)
J. Bacteriol
, vol.153
, pp. 562-565
-
-
Arraj, J.A.1
Marinus, M.G.2
-
4
-
-
33646000316
-
Co-selection of antibiotic and metal resistance
-
Baker-Austin, C., Wright, M. S., Stepanauskas, R., and McArthur, J. V. (2006). Co-selection of antibiotic and metal resistance. Trends Microbiol. 14, 176-182. doi: 10.1016/j.tim.2006.02.006
-
(2006)
Trends Microbiol
, vol.14
, pp. 176-182
-
-
Baker-Austin, C.1
Wright, M.S.2
Stepanauskas, R.3
McArthur, J.V.4
-
5
-
-
0019838599
-
Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti
-
Bánfalvi, Z., Sakanyan, V., Koncz, C., Kiss, A., Dusha, I., and Kondorosi, A. (1981). Location of nodulation and nitrogen fixation genes on a high molecular weight plasmid of R. meliloti. Mol. Gen. Gen. 184, 318-325.
-
(1981)
Mol. Gen. Gen
, vol.184
, pp. 318-325
-
-
Bánfalvi, Z.1
Sakanyan, V.2
Koncz, C.3
Kiss, A.4
Dusha, I.5
Kondorosi, A.6
-
6
-
-
84920668996
-
Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India
-
Bengtsson-Palme, J., Boulund, F., Fick, J., Kristiansson, E., and Larsson, D. G. J. (2014). Shotgun metagenomics reveals a wide array of antibiotic resistance genes and mobile elements in a polluted lake in India. Front. Microbiol. 5:648. doi: 10.3389/fmicb.2014.00648
-
(2014)
Front. Microbiol
, vol.5
, pp. 648
-
-
Bengtsson-Palme, J.1
Boulund, F.2
Fick, J.3
Kristiansson, E.4
Larsson, D.G.J.5
-
7
-
-
16544389212
-
Frequency and distribution of tetracycline resistance genes in genetically diverse, nonselected, and nonclinical Escherichia coli strains, isolated from diverse human and animal sources
-
Bryan, A., Shapir, N., and Sadowsky, M. J. (2004). Frequency and distribution of tetracycline resistance genes in genetically diverse, nonselected, and nonclinical Escherichia coli strains, isolated from diverse human and animal sources. Appl. Environ. Microbiol. 70, 2503-2507. doi: 10.1128/AEM.70.4.2503-2507.2004
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 2503-2507
-
-
Bryan, A.1
Shapir, N.2
Sadowsky, M.J.3
-
8
-
-
84885957268
-
Metagenomic exploration reveals high levels of microbial arsenic metabolism genes in activated sludge and coastal sediments
-
Cai, L., Yu, K., Yang, Y., Chen, B. W., Li, X. D., and Zhang, T. (2013). Metagenomic exploration reveals high levels of microbial arsenic metabolism genes in activated sludge and coastal sediments. Appl. Microbiol. Biotechnol. 97, 9579-9588. doi: 10.1007/s00253-012-4678-8
-
(2013)
Appl. Microbiol. Biotechnol
, vol.97
, pp. 9579-9588
-
-
Cai, L.1
Yu, K.2
Yang, Y.3
Chen, B.W.4
Li, X.D.5
Zhang, T.6
-
9
-
-
0029963677
-
cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors
-
Censini, S., Lange, C., Xiang, Z. Y., Crabtree, J. E., Ghiara, P., Borodovsky, M., et al. (1996). cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors. Proc. Natl. Acad. Sci. U.S.A. 93, 14648-14653. doi: 10.1073/pnas.93.25.14648
-
(1996)
Proc. Natl. Acad. Sci. U.S.A
, vol.93
, pp. 14648-14653
-
-
Censini, S.1
Lange, C.2
Xiang, Z.Y.3
Crabtree, J.E.4
Ghiara, P.5
Borodovsky, M.6
-
10
-
-
0033794814
-
Phenotypic and molecular characterization of conjugative antibiotic resistance plasmids isolated from bacterial communities of activated sludge
-
Dröge, M., Puhler, A., and Selbitschka, W. (2000). Phenotypic and molecular characterization of conjugative antibiotic resistance plasmids isolated from bacterial communities of activated sludge. Mol. Gen. Genet. 263, 471-482. doi: 10.1007/s004380051191
-
(2000)
Mol. Gen. Genet
, vol.263
, pp. 471-482
-
-
Dröge, M.1
Puhler, A.2
Selbitschka, W.3
-
11
-
-
23344451933
-
Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000
-
Feil, H., Feil, W. S., Chain, P., Larimer, F., DiBartolo, G., Copeland, A., et al. (2005). Comparison of the complete genome sequences of Pseudomonas syringae pv. syringae B728a and pv. tomato DC3000. Proc. Natl. Acad. Sci. U.S.A. 102, 11064-11069. doi: 10.1073/pnas.0504930102
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 11064-11069
-
-
Feil, H.1
Feil, W.S.2
Chain, P.3
Larimer, F.4
DiBartolo, G.5
Copeland, A.6
-
12
-
-
84901652050
-
Bacterial phylogeny structures soil resistomes across habitats
-
Forsberg, K. J., Patel, S., Gibson, M. K., Lauber, C. L., Knight, R., Fierer, N., et al. (2014). Bacterial phylogeny structures soil resistomes across habitats. Nature 509, 612-616. doi: 10.1038/nature13377
-
(2014)
Nature
, vol.509
, pp. 612-616
-
-
Forsberg, K.J.1
Patel, S.2
Gibson, M.K.3
Lauber, C.L.4
Knight, R.5
Fierer, N.6
-
13
-
-
34250636501
-
-
New York, NY: IWA Publishing
-
Grady, C. L. Jr., Daigger, G. T., Love, N. G., Filipe, C. D., and Leslie Grady, C. (2011). Biological Wastewater Treatment. New York, NY: IWA Publishing.
-
(2011)
Biological Wastewater Treatment
-
-
Grady, C.L.1
Daigger, G.T.2
Love, N.G.3
Filipe, C.D.4
Leslie Grady, C.5
-
14
-
-
34748886657
-
'PAST: Paleontological statistics software package for education and data analysis,'
-
ed. J. Louys (California: Coquina Press)
-
Hammer, Ø., Harper, D. A. T., and Ryan, P. D. (2001). "PAST: Paleontological statistics software package for education and data analysis," in Palaeontologia Electronica, Vol. 4, ed J. Louys (California: Coquina Press), 1-9.
-
(2001)
Palaeontologia Electronica
, vol.4
, pp. 1-9
-
-
Hammer, Ø.1
Harper, D.A.T.2
Ryan, P.D.3
-
15
-
-
0025239898
-
Degradation of the chlorinated phenoxyacetate herbicides 2,4-dichlorophenoxyacetic acid and 2,4,5-trichlorophenoxyacetic acid by pure and mixed bacterial cultures
-
Haugland, R. A., Schlemm, D. J., Lyons, R. P. III., Sferra, P. R., and Chakrabarty, A. M. (1990). Degradation of the chlorinated phenoxyacetate herbicides 2,4-dichlorophenoxyacetic acid and 2,4,5-trichlorophenoxyacetic acid by pure and mixed bacterial cultures. Appl. Environ. Microbiol. 56, 1357-1362.
-
(1990)
Appl. Environ. Microbiol
, vol.56
, pp. 1357-1362
-
-
Haugland, R.A.1
Schlemm, D.J.2
Lyons, R.P.3
Sferra, P.R.4
Chakrabarty, A.M.5
-
16
-
-
84857145150
-
ART: a next-generation sequencing read simulator
-
Huang, W. C., Li, L. P., Myers, J. R., and Marth, G. T. (2012). ART: a next-generation sequencing read simulator. Bioinformatics 28, 593-594. doi: 10.1093/bioinformatics/btr708
-
(2012)
Bioinformatics
, vol.28
, pp. 593-594
-
-
Huang, W.C.1
Li, L.P.2
Myers, J.R.3
Marth, G.T.4
-
17
-
-
0036181778
-
Exploring prokaryotic diversity in the genomic era
-
Hugenholtz, P. (2002). Exploring prokaryotic diversity in the genomic era. Genome Biol. 3:reviews0003. doi: 10.1186/gb-2002-3-2-reviews0003
-
(2002)
Genome Biol
, vol.3
-
-
Hugenholtz, P.1
-
18
-
-
0015980566
-
Conjugal transfer of plasmid-borne multiple antibiotic resistance in Streptococcus faecalis var. zymogenes
-
Jacob, A. E., and Hobbs, S. J. (1974). Conjugal transfer of plasmid-borne multiple antibiotic resistance in Streptococcus faecalis var. zymogenes. J. Bacteriol. 117, 360-372.
-
(1974)
J. Bacteriol
, vol.117
, pp. 360-372
-
-
Jacob, A.E.1
Hobbs, S.J.2
-
19
-
-
33645752522
-
qnrB, another plasmid-mediated gene for quinolone resistance
-
Jacoby, G. A., Walsh, K. E., Mills, D. M., Walker, V. J., Oh, H., Robicsek, A., et al. (2006). qnrB, another plasmid-mediated gene for quinolone resistance. Antimicrob. Agents Chemother. 50, 1178-1182. doi: 10.1128/AAC.50.4.1178-1182.2006
-
(2006)
Antimicrob. Agents Chemother
, vol.50
, pp. 1178-1182
-
-
Jacoby, G.A.1
Walsh, K.E.2
Mills, D.M.3
Walker, V.J.4
Oh, H.5
Robicsek, A.6
-
20
-
-
0029005221
-
Bacterial resistance mechanisms for heavy metals of environmental concern
-
Ji, G., and Silver, S. (1995). Bacterial resistance mechanisms for heavy metals of environmental concern. J. Ind. Microbiol. 14, 61-75. doi: 10.1007/BF01569887
-
(1995)
J. Ind. Microbiol
, vol.14
, pp. 61-75
-
-
Ji, G.1
Silver, S.2
-
21
-
-
84946718824
-
'Plasmid capture from metagenomes,'
-
ed. K. E. Nelson (New York, NY: Springer)
-
Jones, B. V. (2013). "Plasmid capture from metagenomes," in Encyclopedia of Metagenomics, ed K. E. Nelson (New York, NY: Springer), 1-13.
-
(2013)
Encyclopedia of Metagenomics
, pp. 1-13
-
-
Jones, B.V.1
-
22
-
-
84895153034
-
Hundreds of circular novel plasmids and dna elements identified in a rat cecum metamobilome
-
Jørgensen, T. S., Xu, Z. F., Hansen, M. A., Sorensen, S. J., and Hansen, L. H. (2014). Hundreds of circular novel plasmids and dna elements identified in a rat cecum metamobilome. PLoS ONE 9:e87924. doi: 10.1371/journal.pone.0087924
-
(2014)
PLoS ONE
, vol.9
-
-
Jørgensen, T.S.1
Xu, Z.F.2
Hansen, M.A.3
Sorensen, S.J.4
Hansen, L.H.5
-
23
-
-
84859474080
-
Insights into the bovine rumen plasmidome
-
Kav, A. B., Sasson, G., Jami, E., Doron-Faigenboim, A., Benhar, I., and Mizrahi, I. (2012). Insights into the bovine rumen plasmidome. Proc. Natl. Acad. Sci. U.S.A. 109, 5452-5457. doi: 10.1073/pnas.1116410109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A
, vol.109
, pp. 5452-5457
-
-
Kav, A.B.1
Sasson, G.2
Jami, E.3
Doron-Faigenboim, A.4
Benhar, I.5
Mizrahi, I.6
-
24
-
-
57149085868
-
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
-
Koonin, E. V., and Wolf, Y. I. (2008). Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world. Nucleic Acids Res. 36, 6688-6719. doi: 10.1093/nar/gkn668
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 6688-6719
-
-
Koonin, E.V.1
Wolf, Y.I.2
-
25
-
-
0000080813
-
Cell genetics and hereditary symbiosis
-
Lederberg, J. (1952). Cell genetics and hereditary symbiosis. Physiol. Rev. 32, 403-430.
-
(1952)
Physiol. Rev
, vol.32
, pp. 403-430
-
-
Lederberg, J.1
-
26
-
-
84916879430
-
Potentially novel copper resistance genes in copper-enriched activated sludge revealed by metagenomic analysis
-
Li, L. G., Cai, L., Zhang, X. X., and Zhang, T. (2014). Potentially novel copper resistance genes in copper-enriched activated sludge revealed by metagenomic analysis. Appl. Microbiol. Biotechnol. 98, 10255-10266. doi: 10.1007/s00253-014-5939-5
-
(2014)
Appl. Microbiol. Biotechnol
, vol.98
, pp. 10255-10266
-
-
Li, L.G.1
Cai, L.2
Zhang, X.X.3
Zhang, T.4
-
27
-
-
58149183697
-
ARDB-Antibiotic Resistance Genes Database
-
Liu, B., and Pop, M. (2009). ARDB-Antibiotic Resistance Genes Database. Nucleic Acids Res. 37, D443-D447. doi: 10.1093/nar/gkn656
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D443-D447
-
-
Liu, B.1
Pop, M.2
-
28
-
-
84856331831
-
Biodegradation of a mixture of 2,4-dichlorophenoxyacetic acid and multiple chlorophenols by aerobic granules cultivated through plasmid pJP4 mediated bioaugmentation
-
Ma, J. Y., Quan, X. C., Yang, Z. F., and Li, A. J. (2012). Biodegradation of a mixture of 2,4-dichlorophenoxyacetic acid and multiple chlorophenols by aerobic granules cultivated through plasmid pJP4 mediated bioaugmentation. Chem Eng. J. 181, 144-151. doi: 10.1016/j.cej.2011.11.041
-
(2012)
Chem Eng. J
, vol.181
, pp. 144-151
-
-
Ma, J.Y.1
Quan, X.C.2
Yang, Z.F.3
Li, A.J.4
-
29
-
-
53549118607
-
The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
Meyer, F., Paarmann, D., D'souza, M., Olson, R., Glass, E. M., Kubal, M., et al. (2008). The metagenomics RAST server-a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinformatics 9:386. doi: 10.1186/1471-2105-9-386
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
-
30
-
-
84879247967
-
Molecular epidemiology of extended-spectrum beta-lactamase-producing Escherichia coli in Tunisia and characterization of their virulence factors and plasmid addiction systems
-
Mnif, B., Harhour, H., Jdidi, J., Mahjoubi, F., Genel, N., Arlet, G., et al. (2013). Molecular epidemiology of extended-spectrum beta-lactamase-producing Escherichia coli in Tunisia and characterization of their virulence factors and plasmid addiction systems. BMC Microbiol. 13:147. doi: 10.1186/1471-2180-13-147
-
(2013)
BMC Microbiol
, vol.13
, pp. 147
-
-
Mnif, B.1
Harhour, H.2
Jdidi, J.3
Mahjoubi, F.4
Genel, N.5
Arlet, G.6
-
31
-
-
0017352114
-
Linkage of mercury, cadmium, and arsenate and drug-resistance in clinical isolates of Pseudomonas-Aeruginosa
-
Nakahara, H., Ishikawa, T., Sarai, Y., Kondo, I., Kozukue, H., and Silver, S. (1977). Linkage of mercury, cadmium, and arsenate and drug-resistance in clinical isolates of Pseudomonas-Aeruginosa. Appl. Environ. Microbiol. 33, 975-976.
-
(1977)
Appl. Environ. Microbiol
, vol.33
, pp. 975-976
-
-
Nakahara, H.1
Ishikawa, T.2
Sarai, Y.3
Kondo, I.4
Kozukue, H.5
Silver, S.6
-
32
-
-
84891762873
-
BacMet: antibacterial biocide and metal resistance genes database
-
Pal, C., Bengtsson-Palme, J., Rensing, C., Kristiansson, E., and Larsson, D. G. J. (2014). BacMet: antibacterial biocide and metal resistance genes database. Nucleic Acids Res. 42, D737-D743. doi: 10.1093/nar/gkt1252
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D737-D743
-
-
Pal, C.1
Bengtsson-Palme, J.2
Rensing, C.3
Kristiansson, E.4
Larsson, D.G.J.5
-
33
-
-
77951945504
-
Identifying biologically relevant differences between metagenomic communities
-
Parks, D. H., and Beiko, R. G. (2010). Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26, 715-721. doi: 10.1093/bioinformatics/btq041
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
34
-
-
84910045966
-
Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant
-
Rahube, T. O., Viana, L. S., Koraimann, G., and Yost, C. K. (2014). Characterization and comparative analysis of antibiotic resistance plasmids isolated from a wastewater treatment plant. Front. Microbiol. 5:558. doi: 10.3389/fmicb.2014.00558
-
(2014)
Front. Microbiol
, vol.5
, pp. 558
-
-
Rahube, T.O.1
Viana, L.S.2
Koraimann, G.3
Yost, C.K.4
-
35
-
-
78650305634
-
What traits are carried on mobile genetic elements, and why?
-
Rankin, D. J., Rocha, E. P. C., and Brown, S. P. (2011). What traits are carried on mobile genetic elements, and why? Heredity 106, 1-10. doi: 10.1038/hdy.2010.24
-
(2011)
Heredity
, vol.106
, pp. 1-10
-
-
Rankin, D.J.1
Rocha, E.P.C.2
Brown, S.P.3
-
36
-
-
84873433431
-
Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review
-
Rizzo, L., Manaia, C., Merlin, C., Schwartz, T., Dagot, C., Ploy, M. C., et al. (2013). Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review. Sci. Total Environ. 447, 345-360. doi: 10.1016/j.scitotenv.2013.01.032
-
(2013)
Sci. Total Environ
, vol.447
, pp. 345-360
-
-
Rizzo, L.1
Manaia, C.2
Merlin, C.3
Schwartz, T.4
Dagot, C.5
Ploy, M.C.6
-
37
-
-
33748885240
-
The worldwide emergence of plasmid-mediated quinolone resistance
-
Robicsek, A., Jacoby, G. A., and Hooper, D. C. (2006). The worldwide emergence of plasmid-mediated quinolone resistance. Lancet Infect. Dis. 6, 629-640. doi: 10.1016/S1473-3099(06)70599-0
-
(2006)
Lancet Infect. Dis
, vol.6
, pp. 629-640
-
-
Robicsek, A.1
Jacoby, G.A.2
Hooper, D.C.3
-
38
-
-
84880108657
-
Tetracycline resistance gene maintenance under varying bacterial growth rate, substrate and oxygen availability, and tetracycline concentration
-
Rysz, M., Mansfield, W. R., Fortner, J. D., and Avarez, P. J. J. (2013). Tetracycline resistance gene maintenance under varying bacterial growth rate, substrate and oxygen availability, and tetracycline concentration. Environ. Sci. Technol. 47, 6995-7001. doi: 10.1021/es3035329
-
(2013)
Environ. Sci. Technol
, vol.47
, pp. 6995-7001
-
-
Rysz, M.1
Mansfield, W.R.2
Fortner, J.D.3
Avarez, P.J.J.4
-
39
-
-
33947422497
-
Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function
-
Schlüter, A., Szuepanowski, R., Kurz, N., Schneiker, S., Krahn, I., and Pühler, A. (2007). Erythromycin resistance-conferring plasmid pRSB105, isolated from a sewage treatment plant, harbors a new macrolide resistance determinant, an integron-containing Tn402-like element, and a large region of unknown function. Appl. Environ. Microbiol. 73, 1952-1960. doi: 10.1128/AEM.02159-06
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 1952-1960
-
-
Schlüter, A.1
Szuepanowski, R.2
Kurz, N.3
Schneiker, S.4
Krahn, I.5
Pühler, A.6
-
40
-
-
84875887257
-
Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture
-
Seiler, C., and Berendonk, T. U. (2012). Heavy metal driven co-selection of antibiotic resistance in soil and water bodies impacted by agriculture and aquaculture. Front. Microbiol. 3:399. doi: 10.3389/fmicb.2012.00399
-
(2012)
Front. Microbiol
, vol.3
, pp. 399
-
-
Seiler, C.1
Berendonk, T.U.2
-
41
-
-
84878275176
-
Community-wide plasmid gene mobilization and selection
-
Sentchilo, V., Mayer, A. P., Guy, L., Miyazaki, R., Tringe, S. G., Barry, K., et al. (2013). Community-wide plasmid gene mobilization and selection. ISME J. 7, 1173-1186. doi: 10.1038/ismej.2013.13
-
(2013)
ISME J
, vol.7
, pp. 1173-1186
-
-
Sentchilo, V.1
Mayer, A.P.2
Guy, L.3
Miyazaki, R.4
Tringe, S.G.5
Barry, K.6
-
42
-
-
23944484031
-
Studying plasmid horizontal transfer in situ: a critical review
-
Sørensen, S. J., Bailey, M., Hansen, L. H., Kroer, N., and Wuertz, S. (2005). Studying plasmid horizontal transfer in situ: a critical review. Nat. Rev. Microbiol. 3, 700-710. doi: 10.1038/nrmicro1232
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 700-710
-
-
Sørensen, S.J.1
Bailey, M.2
Hansen, L.H.3
Kroer, N.4
Wuertz, S.5
-
43
-
-
50149091263
-
Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology
-
Szczepanowski, R., Bekel, T., Goesmann, A., Krause, L., Krömeke, H., Kaiser, O., et al. (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. J. Biotechnol. 136, 54-64. doi: 10.1016/j.jbiotec.2008.03.020
-
(2008)
J. Biotechnol
, vol.136
, pp. 54-64
-
-
Szczepanowski, R.1
Bekel, T.2
Goesmann, A.3
Krause, L.4
Krömeke, H.5
Kaiser, O.6
-
44
-
-
9144235601
-
Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system
-
Szczepanowski, R., Krahn, I., Linke, B., Goesmann, A., Pühler, A., and Schlüter, A. (2004). Antibiotic multiresistance plasmid pRSB101 isolated from a wastewater treatment plant is related to plasmids residing in phytopathogenic bacteria and carries eight different resistance determinants including a multidrug transport system. Microbiology 150, 3613-3630. doi: 10.1099/mic.0.27317-0
-
(2004)
Microbiology
, vol.150
, pp. 3613-3630
-
-
Szczepanowski, R.1
Krahn, I.2
Linke, B.3
Goesmann, A.4
Pühler, A.5
Schlüter, A.6
-
45
-
-
23944475626
-
Mechanisms of, and barriers to, horizontal gene transfer between bacteria
-
Thomas, C. M., and Nielsen, K. M. (2005). Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nat. Rev. Microbiol. 3, 711-721. doi: 10.1038/nrmicro1234
-
(2005)
Nat. Rev. Microbiol
, vol.3
, pp. 711-721
-
-
Thomas, C.M.1
Nielsen, K.M.2
-
46
-
-
0031853750
-
Bioaugmentation in activated sludge: current features and future perspectives
-
Van Limbergen, H., Top, E. M., and Verstraete, W. (1998). Bioaugmentation in activated sludge: current features and future perspectives. Appl. Microbiol. Biotechnol. 50, 16-23. doi: 10.1007/s002530051250
-
(1998)
Appl. Microbiol. Biotechnol
, vol.50
, pp. 16-23
-
-
Van Limbergen, H.1
Top, E.M.2
Verstraete, W.3
-
47
-
-
84908577899
-
Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes
-
Yang, Y., Jiang, X. T., and Zhang, T. (2014a). Evaluation of a hybrid approach using UBLAST and BLASTX for metagenomic sequences annotation of specific functional genes. PLoS ONE 9:e110947 doi: 10.1371/journal.pone.0110947
-
(2014)
PLoS ONE
, vol.9
-
-
Yang, Y.1
Jiang, X.T.2
Zhang, T.3
-
48
-
-
84884252582
-
Exploring variation of antibiotic resistance genes in activated sludge over a four-year period through a metagenomic approach
-
Yang, Y., Li, B., Ju, F., and Zhang, T. (2013). Exploring variation of antibiotic resistance genes in activated sludge over a four-year period through a metagenomic approach. Environ. Sci. Technol. 47, 10197-10205. doi: 10.1021/es4017365
-
(2013)
Environ. Sci. Technol
, vol.47
, pp. 10197-10205
-
-
Yang, Y.1
Li, B.2
Ju, F.3
Zhang, T.4
-
49
-
-
84902333101
-
Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach
-
Yang, Y., Li, B., Zou, S., Fang, H. H., and Zhang, T. (2014b). Fate of antibiotic resistance genes in sewage treatment plant revealed by metagenomic approach. Water Res. 62, 97-106. doi: 10.1016/j.watres.2014.05.019
-
(2014)
Water Res
, vol.62
, pp. 97-106
-
-
Yang, Y.1
Li, B.2
Zou, S.3
Fang, H.H.4
Zhang, T.5
-
50
-
-
84903819288
-
Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants
-
Yang, Y., Yu, K., Xia, Y., Lau, F. T., Tang, D. T., Fung, W. C., et al. (2014c). Metagenomic analysis of sludge from full-scale anaerobic digesters operated in municipal wastewater treatment plants. Appl. Microbiol. Biotechnol. 98, 5709-5718. doi: 10.1007/s00253-014-5648-0
-
(2014)
Appl. Microbiol. Biotechnol
, vol.98
, pp. 5709-5718
-
-
Yang, Y.1
Yu, K.2
Xia, Y.3
Lau, F.T.4
Tang, D.T.5
Fung, W.C.6
-
51
-
-
84861345451
-
454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
-
Zhang, T., Shao, M. F., and Ye, L. (2012). 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants. ISME J. 6, 1137-1147. doi: 10.1038/ismej.2011.188
-
(2012)
ISME J
, vol.6
, pp. 1137-1147
-
-
Zhang, T.1
Shao, M.F.2
Ye, L.3
-
52
-
-
80053908791
-
Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge
-
Zhang, T., Zhang, X. X., and Ye, L. (2011). Plasmid metagenome reveals high levels of antibiotic resistance genes and mobile genetic elements in activated sludge. PLoS ONE 6:e26041 doi: 10.1371/journal.pone.0026041
-
(2011)
PLoS ONE
, vol.6
-
-
Zhang, T.1
Zhang, X.X.2
Ye, L.3
-
53
-
-
77955902981
-
Ab initio gene identification in metagenomic sequences
-
Zhu, W. H., Lomsadze, A., and Borodovsky, M. (2010). Ab initio gene identification in metagenomic sequences. Nucleic Acids Res. 38:e132. doi: 10.1093/nar/gkq275
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhu, W.H.1
Lomsadze, A.2
Borodovsky, M.3
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