-
1
-
-
78649810751
-
Local DNA hypomethylation activates genes in rice endosperm
-
Zemach A, et al. (2010) Local DNA hypomethylation activates genes in rice endosperm. Proc Natl Acad Sci USA 107(43):18729-18734.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.43
, pp. 18729-18734
-
-
Zemach, A.1
-
2
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis
-
Stroud H, et al. (2014) Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol 21(1):64-72.
-
(2014)
Nat Struct Mol Biol
, vol.21
, Issue.1
, pp. 64-72
-
-
Stroud, H.1
-
3
-
-
84901041535
-
RNA-directed DNA methylation: An epigenetic pathway of increasing complexity
-
Matzke MA, Mosher RA (2014) RNA-directed DNA methylation: An epigenetic pathway of increasing complexity. Nat Rev Genet 15(6):394-408.
-
(2014)
Nat Rev Genet
, vol.15
, Issue.6
, pp. 394-408
-
-
Matzke, M.A.1
Mosher, R.A.2
-
4
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE (2010) Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 11(3):204-220.
-
(2010)
Nat Rev Genet
, vol.11
, Issue.3
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
5
-
-
84930930954
-
Crop epigenomics: Identifying, unlocking, and harnessing cryptic variation in crop genomes
-
Ji L, Neumann DA, Schmitz RJ (2015) Crop epigenomics: Identifying, unlocking, and harnessing cryptic variation in crop genomes. Mol Plant 8(6):860-870.
-
(2015)
Mol Plant
, vol.8
, Issue.6
, pp. 860-870
-
-
Ji, L.1
Neumann, D.A.2
Schmitz, R.J.3
-
7
-
-
84859560380
-
The cassava genome: Current progress, future directions
-
Prochnik S, et al. (2012) The cassava genome: Current progress, future directions. Trop Plant Biol 5(1):88-94.
-
(2012)
Trop Plant Biol
, vol.5
, Issue.1
, pp. 88-94
-
-
Prochnik, S.1
-
8
-
-
68949141599
-
BSMAP: Whole genome bisulfite sequence MAPping program
-
Xi Y, Li W (2009) BSMAP: Whole genome bisulfite sequence MAPping program. BMC Bioinformatics 10:232.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 232
-
-
Xi, Y.1
Li, W.2
-
9
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus SJ, et al. (2008) Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 452(7184):215-219.
-
(2008)
Nature
, vol.452
, Issue.7184
, pp. 215-219
-
-
Cokus, S.J.1
-
10
-
-
84891928839
-
Genome-wide analysis of DNA methylation in soybean
-
Song QX, et al. (2013) Genome-wide analysis of DNA methylation in soybean. Mol Plant 6(6):1961-1974.
-
(2013)
Mol Plant
, vol.6
, Issue.6
, pp. 1961-1974
-
-
Song, Q.X.1
-
11
-
-
84863103782
-
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
-
Li X, et al. (2012) Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression. BMC Genomics 13:300.
-
(2012)
BMC Genomics
, vol.13
, pp. 300
-
-
Li, X.1
-
12
-
-
0034634395
-
The evolutionary fate and consequences of duplicate genes
-
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290(5494):1151-1155.
-
(2000)
Science
, vol.290
, Issue.5494
, pp. 1151-1155
-
-
Lynch, M.1
Conery, J.S.2
-
13
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R, et al. (2008) Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 133(3):523-536.
-
(2008)
Cell
, vol.133
, Issue.3
, pp. 523-536
-
-
Lister, R.1
-
14
-
-
84986194435
-
Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation
-
Willing E-M, et al. (2015) Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation. Nature Plants 1:14023.
-
(2015)
Nature Plants
, vol.1
, pp. 14023
-
-
Willing, E.-M.1
-
15
-
-
84873587727
-
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
-
Zhong S, et al. (2013) Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat Biotechnol 31(2):154-159.
-
(2013)
Nat Biotechnol
, vol.31
, Issue.2
, pp. 154-159
-
-
Zhong, S.1
-
16
-
-
77952123054
-
Single base-resolution methylome of the silkworm reveals a sparse epigenomic map
-
Xiang H, et al. (2010) Single base-resolution methylome of the silkworm reveals a sparse epigenomic map. Nat Biotechnol 28(5):516-520.
-
(2010)
Nat Biotechnol
, vol.28
, Issue.5
, pp. 516-520
-
-
Xiang, H.1
-
17
-
-
33748629119
-
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
-
Zhang X, et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell 126(6):1189-1201.
-
(2006)
Cell
, vol.126
, Issue.6
, pp. 1189-1201
-
-
Zhang, X.1
-
18
-
-
3142732892
-
Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution
-
Blanc G, Wolfe KH (2004) Functional divergence of duplicated genes formed by polyploidy during Arabidopsis evolution. Plant Cell 16(7):1679-1691.
-
(2004)
Plant Cell
, vol.16
, Issue.7
, pp. 1679-1691
-
-
Blanc, G.1
Wolfe, K.H.2
-
19
-
-
33744822985
-
Widespread genome duplications throughout the history of flowering plants
-
Cui L, et al. (2006) Widespread genome duplications throughout the history of flowering plants. Genome Res 16(6):738-749.
-
(2006)
Genome Res
, vol.16
, Issue.6
, pp. 738-749
-
-
Cui, L.1
-
20
-
-
84905647470
-
Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous- Paleogene boundary
-
Vanneste K, Baele G, Maere S, Van De Peer Y (2014) Analysis of 41 plant genomes supports a wave of successful genome duplications in association with the Cretaceous- Paleogene boundary. Genome Res 24(8):1334-1347.
-
(2014)
Genome Res
, vol.24
, Issue.8
, pp. 1334-1347
-
-
Vanneste, K.1
Baele, G.2
Maere, S.3
Van De Peer., Y.4
-
21
-
-
0033804889
-
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in arabidopsis, arabis, and related genera (Brassicaceae)
-
Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol 17(10):1483-1498.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.10
, pp. 1483-1498
-
-
Koch, M.A.1
Haubold, B.2
Mitchell-Olds, T.3
-
22
-
-
0033545861
-
Evidence on the origin of cassava: Phylogeography of Manihot esculenta
-
Olsen KM, Schaal BA (1999) Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proc Natl Acad Sci USA 96(10):5586-5591.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, Issue.10
, pp. 5586-5591
-
-
Olsen, K.M.1
Schaal, B.A.2
-
23
-
-
84905576062
-
Mechanism of DNA methylation-directed histone methylation by KRYPTONITE
-
Du J, et al. (2014) Mechanism of DNA methylation-directed histone methylation by KRYPTONITE. Mol Cell 55(3):495-504.
-
(2014)
Mol Cell
, vol.55
, Issue.3
, pp. 495-504
-
-
Du, J.1
-
24
-
-
0000479431
-
Isolation of plant DNA from fresh tissue
-
Doyle JJ, Doyle JL (1990) Isolation of plant DNA from fresh tissue. Focus 12:13-15.
-
(1990)
Focus
, vol.12
, pp. 13-15
-
-
Doyle, J.J.1
Doyle, J.L.2
-
25
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL (2009) TopHat: Discovering splice junctions with RNA-Seq. Bioinformatics 25(9):1105-1111.
-
(2009)
Bioinformatics
, vol.25
, Issue.9
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
26
-
-
84859885816
-
Differential gene and transcript expression analysis of RNA seq experiments with tophat and cufflinks
-
Trapnell C, et al. (2012) Differential gene and transcript expression analysis of RNAseq experiments with TopHat and Cufflinks. Nat Protoc 7(3):562-578.
-
(2012)
Nat Protoc
, vol.7
, Issue.3
, pp. 562-578
-
-
Trapnell, C.1
-
27
-
-
84860137835
-
MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity
-
Wang Y, et al. (2012) MCScanX: A toolkit for detection and evolutionary analysis of gene synteny and collinearity. Nucleic Acids Res 40(7):e49.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.7
, pp. e49
-
-
Wang, Y.1
-
28
-
-
34248669040
-
KaKs-Calculator: Calculating Ka and Ks through model selection and model averaging
-
Zhang Z, et al. (2006) KaKs-Calculator: Calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics 4(4):259-263.
-
(2006)
Genomics Proteomics Bioinformatics
, vol.4
, Issue.4
, pp. 259-263
-
-
Zhang, Z.1
|