-
1
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkóczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:213-221.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
2
-
-
53649097070
-
Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism
-
Arita K., Ariyoshi M., Tochio H., Nakamura Y., Shirakawa M. Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism. Nature 2008, 455:818-821.
-
(2008)
Nature
, vol.455
, pp. 818-821
-
-
Arita, K.1
Ariyoshi, M.2
Tochio, H.3
Nakamura, Y.4
Shirakawa, M.5
-
3
-
-
53649088595
-
Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1
-
Avvakumov G.V., Walker J.R., Xue S., Li Y., Duan S., Bronner C., Arrowsmith C.H., Dhe-Paganon S. Structural basis for recognition of hemi-methylated DNA by the SRA domain of human UHRF1. Nature 2008, 455:822-825.
-
(2008)
Nature
, vol.455
, pp. 822-825
-
-
Avvakumov, G.V.1
Walker, J.R.2
Xue, S.3
Li, Y.4
Duan, S.5
Bronner, C.6
Arrowsmith, C.H.7
Dhe-Paganon, S.8
-
4
-
-
0035878120
-
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
-
Bartee L., Malagnac F., Bender J. Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene. Genes Dev. 2001, 15:1753-1758.
-
(2001)
Genes Dev.
, vol.15
, pp. 1753-1758
-
-
Bartee, L.1
Malagnac, F.2
Bender, J.3
-
5
-
-
67349190247
-
Linking DNA methylation and histone modification: patterns and paradigms
-
Cedar H., Bergman Y. Linking DNA methylation and histone modification: patterns and paradigms. Nat. Rev. Genet. 2009, 10:295-304.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 295-304
-
-
Cedar, H.1
Bergman, Y.2
-
6
-
-
20544461679
-
Structural and sequence motifs of protein (histone) methylation enzymes
-
Cheng X., Collins R.E., Zhang X. Structural and sequence motifs of protein (histone) methylation enzymes. Annu. Rev. Biophys. Biomol. Struct. 2005, 34:267-294.
-
(2005)
Annu. Rev. Biophys. Biomol. Struct.
, vol.34
, pp. 267-294
-
-
Cheng, X.1
Collins, R.E.2
Zhang, X.3
-
7
-
-
77954659099
-
Relationship between nucleosome positioning and DNA methylation
-
Chodavarapu R.K., Feng S., Bernatavichute Y.V., Chen P.Y., Stroud H., Yu Y., Hetzel J.A., Kuo F., Kim J., Cokus S.J., et al. Relationship between nucleosome positioning and DNA methylation. Nature 2010, 466:388-392.
-
(2010)
Nature
, vol.466
, pp. 388-392
-
-
Chodavarapu, R.K.1
Feng, S.2
Bernatavichute, Y.V.3
Chen, P.Y.4
Stroud, H.5
Yu, Y.6
Hetzel, J.A.7
Kuo, F.8
Kim, J.9
Cokus, S.J.10
-
8
-
-
84866981889
-
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants
-
Du J., Zhong X., Bernatavichute Y.V., Stroud H., Feng S., Caro E., Vashisht A.A., Terragni J., Chin H.G., Tu A., et al. Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell 2012, 151:167-180.
-
(2012)
Cell
, vol.151
, pp. 167-180
-
-
Du, J.1
Zhong, X.2
Bernatavichute, Y.V.3
Stroud, H.4
Feng, S.5
Caro, E.6
Vashisht, A.A.7
Terragni, J.8
Chin, H.G.9
Tu, A.10
-
9
-
-
33745454548
-
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
-
Ebbs M.L., Bender J. Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase. Plant Cell 2006, 18:1166-1176.
-
(2006)
Plant Cell
, vol.18
, pp. 1166-1176
-
-
Ebbs, M.L.1
Bender, J.2
-
10
-
-
77949535720
-
Features and development of Coot
-
Emsley P., Lohkamp B., Scott W.G., Cowtan K. Features and development of Coot. Acta Crystallogr. D Biol. Crystallogr. 2010, 66:486-501.
-
(2010)
Acta Crystallogr. D Biol. Crystallogr.
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
11
-
-
15744401773
-
Eukaryotic cytosine methyltransferases
-
Goll M.G., Bestor T.H. Eukaryotic cytosine methyltransferases. Annu. Rev. Biochem. 2005, 74:481-514.
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 481-514
-
-
Goll, M.G.1
Bestor, T.H.2
-
12
-
-
53649089723
-
The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix
-
Hashimoto H., Horton J.R., Zhang X., Bostick M., Jacobsen S.E., Cheng X. The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix. Nature 2008, 455:826-829.
-
(2008)
Nature
, vol.455
, pp. 826-829
-
-
Hashimoto, H.1
Horton, J.R.2
Zhang, X.3
Bostick, M.4
Jacobsen, S.E.5
Cheng, X.6
-
13
-
-
0037041422
-
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
-
Jackson J.P., Lindroth A.M., Cao X., Jacobsen S.E. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 2002, 416:556-560.
-
(2002)
Nature
, vol.416
, pp. 556-560
-
-
Jackson, J.P.1
Lindroth, A.M.2
Cao, X.3
Jacobsen, S.E.4
-
14
-
-
11144354402
-
Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana
-
Jackson J.P., Johnson L., Jasencakova Z., Zhang X., Perez Burgos L., Singh P.B., Cheng X., Schubert I., Jenuwein T., Jacobsen S.E. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana. Chromosoma 2004, 112:308-315.
-
(2004)
Chromosoma
, vol.112
, pp. 308-315
-
-
Jackson, J.P.1
Johnson, L.2
Jasencakova, Z.3
Zhang, X.4
Perez Burgos, L.5
Singh, P.B.6
Cheng, X.7
Schubert, I.8
Jenuwein, T.9
Jacobsen, S.E.10
-
15
-
-
33846931283
-
The SRA methyl-cytosine-binding domain links DNA and histone methylation
-
Johnson L.M., Bostick M., Zhang X., Kraft E., Henderson I., Callis J., Jacobsen S.E. The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr. Biol. 2007, 17:379-384.
-
(2007)
Curr. Biol.
, vol.17
, pp. 379-384
-
-
Johnson, L.M.1
Bostick, M.2
Zhang, X.3
Kraft, E.4
Henderson, I.5
Callis, J.6
Jacobsen, S.E.7
-
16
-
-
84895897598
-
SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation
-
Johnson L.M., Du J., Hale C.J., Bischof S., Feng S., Chodavarapu R.K., Zhong X., Marson G., Pellegrini M., Segal D.J., et al. SRA- and SET-domain-containing proteins link RNA polymerase V occupancy to DNA methylation. Nature 2014, 507:124-128.
-
(2014)
Nature
, vol.507
, pp. 124-128
-
-
Johnson, L.M.1
Du, J.2
Hale, C.J.3
Bischof, S.4
Feng, S.5
Chodavarapu, R.K.6
Zhong, X.7
Marson, G.8
Pellegrini, M.9
Segal, D.J.10
-
17
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 2010, 11:204-220.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
18
-
-
0035874929
-
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
-
Lindroth A.M., Cao X., Jackson J.P., Zilberman D., McCallum C.M., Henikoff S., Jacobsen S.E. Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation. Science 2001, 292:2077-2080.
-
(2001)
Science
, vol.292
, pp. 2077-2080
-
-
Lindroth, A.M.1
Cao, X.2
Jackson, J.P.3
Zilberman, D.4
McCallum, C.M.5
Henikoff, S.6
Jacobsen, S.E.7
-
19
-
-
12244271065
-
An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation
-
Malagnac F., Bartee L., Bender J. An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J. 2002, 21:6842-6852.
-
(2002)
EMBO J.
, vol.21
, pp. 6842-6852
-
-
Malagnac, F.1
Bartee, L.2
Bender, J.3
-
20
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 1997, 276:307-326.
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
21
-
-
78651515883
-
A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo
-
Rajakumara E., Law J.A., Simanshu D.K., Voigt P., Johnson L.M., Reinberg D., Patel D.J., Jacobsen S.E. A dual flip-out mechanism for 5mC recognition by the Arabidopsis SUVH5 SRA domain and its impact on DNA methylation and H3K9 dimethylation in vivo. Genes Dev. 2011, 25:137-152.
-
(2011)
Genes Dev.
, vol.25
, pp. 137-152
-
-
Rajakumara, E.1
Law, J.A.2
Simanshu, D.K.3
Voigt, P.4
Johnson, L.M.5
Reinberg, D.6
Patel, D.J.7
Jacobsen, S.E.8
-
22
-
-
84872614860
-
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome
-
Stroud H., Greenberg M.V., Feng S., Bernatavichute Y.V., Jacobsen S.E. Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell 2013, 152:352-364.
-
(2013)
Cell
, vol.152
, pp. 352-364
-
-
Stroud, H.1
Greenberg, M.V.2
Feng, S.3
Bernatavichute, Y.V.4
Jacobsen, S.E.5
-
23
-
-
84893716683
-
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. non-
-
Stroud H., Do T., Du J., Zhong X., Feng S., Johnson L., Patel D.J., Jacobsen S.E. Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. non- Nat. Struct. Mol. Biol. 2014, 21:64-72.
-
(2014)
Nat. Struct. Mol. Biol.
, vol.21
, pp. 64-72
-
-
Stroud, H.1
Do, T.2
Du, J.3
Zhong, X.4
Feng, S.5
Johnson, L.6
Patel, D.J.7
Jacobsen, S.E.8
-
24
-
-
0042164227
-
Structural basis for the product specificity of histone lysine methyltransferases
-
Zhang X., Yang Z., Khan S.I., Horton J.R., Tamaru H., Selker E.U., Cheng X. Structural basis for the product specificity of histone lysine methyltransferases. Mol. Cell 2003, 12:177-185.
-
(2003)
Mol. Cell
, vol.12
, pp. 177-185
-
-
Zhang, X.1
Yang, Z.2
Khan, S.I.3
Horton, J.R.4
Tamaru, H.5
Selker, E.U.6
Cheng, X.7
|