A heavy metal tolerant novel bacterium, Bacillus malikii sp. nov., isolated from tannery effluent wastewater

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 108, Issue 6, 2015, Pages 1319-1330

  Abbas, Saira ^a,b,c   Ahmed, Iftikhar ^a,b,c   Kudo, Takuji ^b   Iqbal, Muhammad ^a   Lee, Yong Jae ^d   Fujiwara, Toru ^c   Ohkuma, Moriya ^b  

^a NATIONAL AGRICULTURAL RESEARCH CENTRE   (Pakistan)

^b RIKEN BIORESOURCE CENTER   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

Bacillus malikii; Heavy metal tolerant; Tannery effluent

Indexed keywords

CARDIOLIPIN; CHROMIUM; COPPER; LEAD; PHOSPHATIDYLGLYCEROL; SODIUM CHLORIDE; BACTERIAL DNA; FATTY ACID; GLYCOLIPID; HEAVY METAL; INDUSTRIAL WASTE; PHOSPHOLIPID; QUINONE DERIVATIVE; RIBOSOME DNA; RNA 16S; WASTE WATER;

ARTICLE; BACILLUS; BACILLUS HALOSACCHAROVORANS; BACILLUS MALIKII; BACILLUS NIABENSIS; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; EFFLUENT; GENE SEQUENCE; LEATHER INDUSTRY; METAL TOLERANCE; NONHUMAN; PH; PHYLOGENY; PRIORITY JOURNAL; RNA 16S GENE; SALT TOLERANCE; SEQUENCE HOMOLOGY; WASTE WATER; AEROBIC METABOLISM; ANTIBIOTIC RESISTANCE; BACTERIUM IDENTIFICATION; CHEMISTRY; CLASSIFICATION; CLUSTER ANALYSIS; CYTOSOL; DNA SEQUENCE; DRUG EFFECTS; GENETICS; INDUSTRIAL WASTE; ISOLATION AND PURIFICATION; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; TEMPERATURE;

AEROBIOSIS; BACILLUS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CLUSTER ANALYSIS; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; DRUG RESISTANCE, BACTERIAL; FATTY ACIDS; GLYCOLIPIDS; HYDROGEN-ION CONCENTRATION; INDUSTRIAL WASTE; LOCOMOTION; METALS, HEAVY; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHOSPHOLIPIDS; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; TEMPERATURE; WASTE WATER;

EID: 84946499082     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-015-0584-2     Document Type: Article

References (53)

1. Abbas S, Ahmed I, Kudo T, Iida T, Ali GM, Fujiwara T, Ohkuma M (2014) Heavy metal-tolerant and psychrotolerant bacterium Acinetobacter pakistanensis sp. nov., isolated from a textile dyeing wastewater treatment pond. Pak J Agri Sci 51:595–608
2. Abbas S, Ahmed I, Iida T, Lee YJ, Busse HJ, Fujiwara T, Ohkuma M (2015) A heavy-metal tolerant novel bacterium, Alcaligenes pakistanensis sp. nov., isolated from industrial effluent in Pakistan. Antonie van Leeuwenhoek, doi:10.1007/s10482-015-0540-1
3. Affan Q, Shoeb E, Badar U, Akhtar J (2009) Isolation and characterization of bacterial isolates having heavy metal tolerance. J Basic Appl Sci 5:55–60
4. Ahmed I, Yokota A, Fujiwara T (2007a) A novel highly boron tolerant bacterium, Bacillus boroniphilus sp. nov., isolated from soil, that requires boron for its growth. Extremophiles 11:217–224. doi:10.1007/s00792-006-0027-0
5. Ahmed I, Yokota A, Yamazoe A, Fujiwara T (2007b) Proposal of Lysinibacillus boronitolerans gen. nov sp nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 57:1117–1125. doi:10.1099/ijs.0.63867-0
6. Ahmed I, Kudo T, Abbas S, Ehsan M, Iino T, Fujiwara T, Ohkuma M (2014a) Cellulomonas pakistanensis sp. nov., a novel moderately halotolerant Actinobacteria. Int J Syst Evol Microbiol 64:2305–2311. doi:10.1099/ijs.0.059063-0
7. Ahmed I, Sin Y, Paek J, Ehsan M, Hayat R, Iqbal M, Chang YH (2014b) Description of Lysinibacillus pakistanensis. Int J Agri Biol 16:447–450
8. Albert RA et al (2007) Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. Int J Syst Evol Microbiol 57:2729–2737. doi:10.1099/ijs.0.65256-0
9. Ash C, Farrow JAE, Wallbanks S, Collins MD (1991) Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small-subunit-ribosomal RNA sequences. Lett Appl Microbiol 13:202–206. doi:10.1111/j.1472-765X.1991.tb00608.x
10. Bagheri M, Didari M, Amoozegar MA, Schumann P, Sanchez-Porro C, Mehrshad M, Ventosa A (2012) Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake. Int J Syst Evol Microbiol 62:811–816. doi:10.1099/ijs.0.030874-0
11. Cohn F (1872) Untersuchungen über Bakterien. Bertr Biol Pflanz 1:127–224
12. Didari M, Amoozegar MA, Bagheri M, Schumann P, Spröer C, Sánchez-Porro C, Ventosa A (2012) Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov. Int J Syst Evol Microbiol 62:2691–2697. doi:10.1099/ijs.0.034173-0
13. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224–229. doi:10.1099/00207713-39-3-224
14. Fortina MG, Pukall R, Schumann P, Mora D, Parini C, Manachini PL, Stackebrandt E (2001) Ureibacillus gen. nov., a new genus to accommodate Bacillus thermosphaericus (Andersson 1995), emendation of Ureibacillus thermosphaericus and description of Ureibacillus terrenus sp. nov. Int J Syst Evol Microbiol 51:447–455. doi:10.1099/00207713-51-2-447
15. Glaeser SP, Dott W, Busse H-J, Kämpfer P (2013) Fictibacillus phosphorivorans gen. nov., sp. nov. and proposal to reclassify Bacillus arsenicus, Bacillus barbaricus, Bacillus macauensis, Bacillus nanhaiensis, Bacillus rigui, Bacillus solisalsi and Bacillus gelatini in the genus Fictibacillus. Int J Syst Evol Microbiol 63:2934–2944. doi:10.1099/ijs.0.049171-0
16. Hafez M, Fouad A, El-Desouky W (2002) Accumulation of some metal ions on Bacillus licheniformis. J Radioanal Nucl Chem 251:249–252
17. Hatayama K, Shoun H, Ueda Y, Nakamura A (2006) Tuberibacillus calidus gen. nov., sp. nov., isolated from a compost pile and reclassification of Bacillus naganoensis Tomimura et al. 1990 as Pullulanibacillus naganoensis gen. nov., comb. nov. and Bacillus laevolacticus Andersch et al. 1994 as Sporolactobacillus laevolacticus comb. nov. Int J Syst Evol Microbiol 56:2545–2551. doi:10.1099/ijs.0.64303-0
18. Heyndrickx M, Lebbe L, Kersters K, De Vos P, Forsyth C, Logan NA (1998) Virgibacillus: a new genus to accommodate Bacillus pantothenticus (Proom and Knight 1950). Emended description of Virgibacillus pantothenticus. Int J Syst Bacteriol 48:99–106
19. Jeon CO, Lim J-M, Lee J-M, Xu L-H, Jiang C-L, Kim C-J (2005) Reclassification of Bacillus haloalkaliphilus Fritze 1996 as Alkalibacillus haloalkaliphilus gen. nov., comb. nov. and the description of Alkalibacillus salilacus sp. nov., a novel halophilic bacterium isolated from a salt lake in China. Int J Syst Evol Microbiol 55:1891–1896. doi:10.1099/ijs.0.63456-0
20. Kämpfer P, Rossello-Mora R, Falsen E, Busse HJ, Tindall BJ (2006) Cohnella thermotolerans gen. nov., sp. nov., and classification of ‘Paenibacillus hongkongensis’ as Cohnella hongkongensis sp. nov. Int J Syst Evol Microbiol 56:781–786. doi:10.1099/ijs.0.63985-0
21. Kämpfer P, Glaeser SP, Busse H-J (2013) Transfer of Bacillus schlegelii to a novel genus and proposal of Hydrogenibacillus schlegelii gen. nov., comb. nov. Int J Syst Bacteriol 63:1723–1727. doi:10.1099/ijs.0.045146-0
22. Klenk H-P et al (2011) Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2(T)) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010. Stand Genom Sci 5:121–134. doi:10.4056/sigs.2144922
23. Krishnamurthi S, Chakrabarti T, Stackebrand E et al (2009) Re-examination of the taxonomic position of Bacillus silvestris Rheims et al. 1999 and proposal to transfer it to Solibacillus gen. nov as Solibacillus silvestris comb. nov. Int J Syst Evol Microbiol 59:1054–1058. doi:10.1099/ijs.0.65742-0
24. Krishnamurthi S, Ruckmani A, Pukall R, Chakrabarti T (2010) Psychrobacillus gen. nov and proposal for reclassification of Bacillus insolitus Larkin & Stokes, 1967, B. psychrotolerans Abd-El Rahman et al., 2002 and B. psychrodurans Abd-El Rahman et al., 2002 as Psychrobacillus insolitus comb. nov., Psychrobacillus psychrotolerans comb. nov and Psychrobacillus psychrodurans comb. nov. Syst Appl Microbiol 33:367–373. doi:10.1016/j.syapm.2010.06.003
25. Kudo T (2001) Phospholipids. In: Suzuki K, Hiraishi A, Yokota A (eds) Identification manual of bacteria: molecular genetics and molecular biological methods. Springer, Tokyo, pp 135–144
26. Kwon SW, Lee SY, Kim BY, Weon HY, Kim JB, Go SJ, Lee GB (2007) Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation. Int J Syst Evol Microbiol 57:1909–1913. doi:10.1099/ijs.0.64178-0
27. Logan NA, Vos PD (eds) (2009) Genus Bacillus Cohn 1872, 174AL. vol 3. Bergey’s Manual Syst Bacteriol Springer Dordrecht Heidelberg London New York, Baltimore. doi:10.1007/b92997
28. Logan NA et al (2009) Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. Int J Syst Evol Microbiol 59:2114–2121. doi:10.1099/ijs.0.013649-0
29. Mehrshad M et al (2013) Bacillus halosaccharovorans sp. nov., a moderately halophilic bacterium from a hypersaline lake. Int J Syst Evol Microbiol 63:2776–2781. doi:10.1099/ijs.0.046961-0
30. Minnikin DE, O’Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Method 2:233–241. doi:10.1016/0167-7012(84)90018-6
31. Nazina TN et al (2001) Taxonomic study of aerobic thermophilic bacilli: descriptions of Geobacillus subterraneus gen. nov., sp. nov. and Geobacillus uzenensis sp. nov. from petroleum reservoirs and transfer of Bacillus stearothermophilus, Bacillus thermocatenulatus, Bacillus thermoleovorans, Bacillus kaustophilus, Bacillus thermodenitrificans to Geobacillus as the new combinations G.stearothermophilus, G. thermocatenulatus, G. thermoleovorans, G. kaustophilus, G. thermoglucosidasius and G. thermodenitrificans. Int J Syst Evol Microbiol 51:433–446. doi:10.1099/00207713-51-2-433
32. Nicholson WL, Munakata N, Horneck G, Melosh HJ, Setlow P (2000) Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments. Microbiol Mol Biol Rev 64:548–572
33. 2+ ions in industrial waste water on Bacillus sp. Chem Eng J 85:351–355
34. Roohi A, Ahmed I, Paek J, Sin Y, Abbas S, Jamil M, Chang YH (2014) Bacillus pakistanensis sp. nov., a halotolerant bacterium isolated from salt mines of the Karak Area in Pakistan. Antonie Van Leeuwenhoek 105:1163–1172. doi:10.1007/s10482-014-0177-5
35. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101
36. Shida O, Takagi H, Kadowaki K, Komagata K (1996) Proposal for two new genera, Brevibacillus gen nov and Aneurinibacillus gen nov. Int J Syst Bacteriol 46:939–946
37. Shida O, Takagi H, Kadowaki K, Nakamura LK, Komagata K (1997) Transfer of Bacillus alginolyticus, Bacillus chondroitinus, Bacillus curdlanolyticus, Bacillus glucanolyticus, Bacillus kobensis, and Bacillus thiaminolyticus to the genus Paenibacillus and emended description of the genus Paenibacillus. Int J Syst Bacteriol 47:289–298
38. Sorokin DY (2005) Is there a limit for high-pH life? Int J Syst Evol Microbiol 55:1405–1406. doi:10.1099/ijs.0.63737-0
39. Stolz JF, Oremland RS (1999) Bacterial respiration of arsenic and selenium. FEMS Microbiol Rev 23:615–627
40. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol 30:2725–2729. doi:10.1093/molbev/mst197
41. Tripathi M, Vikram S, Jain R, Garg S (2010) Studies on selection of efficient bacterial strains simultaneously tolerant to hexavalent chromium and Pentachlorophenol isolated from treated tannery effluent. Indian J Microbiol 5:707–716
42. Tripathi M, Vikram S, Jain RK, Garg S (2011) Isolation and growth characteristics of chromium(VI) and pentachlorophenol tolerant bacterial Isolate from treated tannery effluent for its possible use in simultaneous bioremediation. Indian J Microbiol 51:61–69. doi:10.1007/s12088-011-0089-2
43. Vaishampayan P, Miyashita M, Ohnishi A, Satomi M, Rooney A, La Duc MT, Venkateswaran K (2009) Description of Rummeliibacillus stabekisii gen. nov., sp nov and reclassification of Bacillus pycnus Nakamura et al, 2002 as Rummeliibacillus pycnus comb. nov. Int J Syst Evol Microbiol 59:1094–1099. doi:10.1099/Ijs.0.006098-0
44. Ventosa A, Quesada E, Rodriguez-Valera F, Ruiz-Berraquero F, Ramos-Cormenzana A (1982) Numerical taxonomy of moderately halophilic Gram-negative rods. J Gen Microbiol 128:1959–1968
45. Verma P et al (2012) Reclassification of Bacillus beijingensis Qiu et al. 2009 and Bacillus ginsengi Qiu et al. 2009 as Bhargavaea beijingensis comb. nov. and Bhargavaea ginsengi comb. nov. and emended description of the genus Bhargavaea. Int J Syst Evol Microbiol 62:2495–2504. doi:10.1099/ijs.0.034850-0
46. Wainø M, Tindall BJ, Schumann P, lngvorsenl K (1999) Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol 49:821–831
47. Wayne LG et al (1987) Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463–464. doi:10.1099/00207713-37-4-463
48. Wieser M, Worliczek H, Kampfer P, Busse HJ (2005) Bacillus herbersteinensis sp. nov. Int J Syst Evol Microbiol 55:2119–2123. doi:10.1099/ijs.0.63660-0
49. Wisotzkey JD, Jurtshuk P Jr, Fox GE, Deinhard G, Poralla K (1992) Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42:263–269. doi:10.1099/00207713-42-2-263
50. Yoon JH, Lee KC, Weiss N, Kho YH, Kang KH, Park YH (2001a) Sporosarcina aquimarina sp nov., a bacterium isolated from seawater in Korea, and transfer of Bacillus globisporus (Larkin and Stokes 1967), Bacillus psychrophilus (Nakamura 1984) and Bacillus pasteurii (Chester 1898) to the genus Sporosarcina as Sporosarcina globispora comb. nov., Sporosarcina psychrophila comb. nov and Sporosarcina pasteurii comb. nov., and emended description of the genus Sporosarcina. Int J Syst Evol Microbiol 51:1079–1086
51. Yoon JH, Weiss N, Lee KC, Lee IS, Kang KH, Park YH (2001b) Jeotgalibacillus alimentarius gen. nov., sp nov., a novel bacterium isolated from jeotgal with l-lysine in the cell wall, and reclassification of Bacillus marinus Ruger 1983 as Marinibacillus marinus gen. nov., comb. nov. Int J Syst Evol Microbiol 51:2087–2093. doi:10.1099/00207713-51-6-2087
52. Zahoor A, Rehman A (2009) Isolation of Cr(VI) reducing bacteria from industrial effluents and their potential use in bioremediation of chromium containing wastewater. J Environ Sci 21:814–820. doi:10.1016/s1001-0742(08)62346-3
53. Zavarzina D, Tourova T, Kolganova T, Boulygina E, Zhilina T (2009) Description of Anaerobacillus alkalilacustre gen. nov., sp. nov. strictly anaerobic diazotrophic bacillus isolated from soda lake and transfer of Bacillus arseniciselenatis, Bacillus macyae, and Bacillus alkalidiazotrophicus to Anaerobacillus as the new combinations A. arseniciselenatis comb. nov., A. macyae comb. nov., and A. alkalidiazotrophicus comb. nov. Microbiol 78:723–731. doi:10.1134/S0026261709060095