Description of Rummeliibacillus stabekisii gen. nov., sp. nov. and reclassification of Bacillus pycnus Nakamura et al. 2002 as Rummeliibacillus pycnus comb. nov

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 5, 2009, Pages 1094-1099

  Vaishampayan, Parag ^a   Miyashita, Mika ^b   Ohnishi, Akihiro ^c   Satomi, Masataka ^d   Rooney, Alejandro ^e   La Duc, Myron T ^a   Venkateswaran, Kasthuri ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^b NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

^c TOKYO UNIVERSITY OF AGRICULTURE   (Japan)

^d FISHERIES RESEARCH AGENCY   (Japan)

^e NATIONAL CENTER FOR AGRICULTURAL UTILIZATION RESEARCH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ASPARTIC ACID; CYTOSINE; FATTY ACID; GLUTAMIC ACID; GUANINE; LYSINE; MENAQUINONE; PEPTIDOGLYCAN; RNA 16S; SODIUM CHLORIDE; BACTERIAL DNA; RIBOSOME DNA;

ARTICLE; BACILLUS; BACILLUS PYCNUS; BACTERIAL CELL WALL; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM EXAMINATION; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; DNA RECOMBINATION; GENE SEQUENCE; GENETIC DIFFERENCE; GRAM POSITIVE BACTERIUM; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PRIORITY JOURNAL; RUMMELIIBACILLUS PYCNUS; RUMMELIIBACILLUS STABEKISII; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES COMPARISON; SPECIES DIFFERENCE; STRAIN DIFFERENCE; AEROBIC BACTERIUM; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; ENDOSPORE-FORMING RODS AND COCCI; GENETICS; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; RNA GENE;

BACILLUS PYCNUS; KURTHIA; POSIBACTERIA;

BACILLUS; BACTERIA, AEROBIC; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GRAM-POSITIVE ENDOSPORE-FORMING RODS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

EID: 67649772154     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.006098-0     Document Type: Article

References (25)

1. Ahmed, I., Yokota, A., Yamazoe, A. & Fujiwara, T. (2007). Proposal of Lysinibacillus boronitolerans gen. nov. sp. nov., and transfer of Bacillus fusiformis to Lysinibacillus fusiformis comb. nov. and Bacillus sphaericus to Lysinibacillus sphaericus comb. nov. Int J Syst Evol Microbiol 57, 1117-1125.
2. Albert, R. A., Archambault, J., Lempa, M., Hurst, B., Richardson, C., Gruenloh, S., Duran, M., Worliczek, H. L., Huber, B. E. & other authors (2007). Proposal of Viridibacillus gen. nov. and reclassification of Bacillus arvi, Bacillus arenosi and Bacillus neidei as Viridibacillus arvi gen. nov., comb. nov., Viridibacillus arenosi comb. nov. and Viridibacillus neidei comb. nov. Int J Syst Evol Microbiol 57, 2729-2737.
3. Ash, C., Farrow, J. A. E., Wallbanks, S. & Collins, M. D. (1991). Phylogenetic heterogeneity of the genus Bacillus revealed by comparative analysis of small subunit-ribosomal RNA sequences. Lett Appl Microbiol 13, 202-206.
4. Cole, R. M. & Popkin, T. J. (1981). Electron microscopy. In Manual of Methods for General Bacteriology, pp. 34-51. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
5. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determined genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
6. Johnson, J. L. (1981). Genetic characterization. In Manual of Methods for General Bacteriology, pp. 450-472. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
7. Kämpfer, P. (1994). Limits and possibilities of total fatty acid analysis for classification and identification of Bacillus species. Syst Appl Microbiol 17, 86-98.
8. Kempf, M. J., Chen, F., Kern, R. & Venkateswaran, K. (2005). Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility. Astrobiology 5, 391-405.
9. La Duc, M. T., Satomi, M. & Venkateswaran, K. (2004). Bacillus odysseyi sp. nov., a round-spore-forming bacillus isolated from the Mars Odyssey spacecraft. Int J Syst Evol Microbiol 54, 195-201.
10. La Duc, M. T., Dekas, A. E., Osman, S., Moissl, C., Newcombe, D. & Venkateswaran, K. (2007). Isolation and characterization of bacteria capable of tolerating the extreme conditions of clean-room environments. Appl Environ Microbiol 73, 2600-2611.
11. Nakagawa, Y. & Yamasato, K. (1993). Phylogenetic diversity of the genus Cytophaga revealed by 16S rRNA sequencing and menaquinone analysis. J Gen Microbiol 139, 1155-1161.
12. Nakamura, L. K. (2000). Phylogeny of Bacillus sphaericus-like organisms. Int J Syst Evol Microbiol 50, 1715-1722.
13. Nakamura, L. K., Shida, O., Takagi, H. & Komagata, K. (2002). Bacillus pycnus sp. nov. and Bacillus neidei sp. nov., round-spored bacteria from soil. Int J Syst Evol Microbiol 52, 501-505.
14. Neide, E. (1904). Botanische Beschreibung einiger sporenbildenden Bakterien. Zentralbl Bakteriol Parasitenkd Infektionskr Hyg 12, 337-352 (in German).
15. Nicholson, W. L. & Setlow, P. (1990). Sporulation, germination and outgrowth. In Molecular Biological Methods for Bacillus, pp. 391-450. Edited by C. R. Harwood & S. M. Cutting. Chichester: Wiley.
16. Osman, S., Satomi, M. & Venkateswaran, K. (2006). Paenibacillus pasadenensis sp. nov. and Paenibacillus barengoltzii sp. nov., isolated from a spacecraft assembly facility. Int J Syst Evol Microbiol 56, 1509-1514.
17. Priest, F. G., Goodfellow, M. & Todd, C. (1988). A numerical classification of the genus Bacillus. J Gen Microbiol 134, 1847-1882.
18. Rheims, H., Frühling, A., Schumann, P., Rohde, M. & Stackebrandt, E. (1999). Bacillus silvestris sp. nov., a new member of the genus Bacillus that contains lysine in its cell wall. Int J Syst Bacteriol 49, 795-802.
19. Saha, P., Krishnamurthi, S., Mayilraj, S., Prasad, G. S., Bora, T. C. & Chakrabarti, T. (2005). Aquimonas voraii gen. nov., sp. nov., a novel gammaproteobacterium isolated from a warm spring of Assam, India. Int J Syst Evol Microbiol 55, 1491-1495.
20. Satomi, M., La Duc, M. T. & Venkateswaran, K. (2006). Bacillus safensis sp. nov., isolated from spacecraft and assembly-facility surfaces. Int J Syst Evol Microbiol 56, 1735-1740.
21. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
22. Shaw, S. & Keddie, R. M. (1983). A numerical taxonomic study of the genus Kurthia with a revised description of Kurthia zopfii and a description of Kurthia gibsonii sp. nov. Syst Appl Microbiol 4, 253-276.
23. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
25. Venkateswaran, K., Kempf, M., Chen, F., Satomi, M., Nicholson, W. & Kern, R. (2003). Bacillus nealsonii sp. nov., isolated from a spacecraft-assembly facility, whose spores are gamma-radiation resistant. Int J Syst Evol Microbiol 53, 165-172.