-
1
-
-
84891808813
-
FlyBase 102-advanced approaches to interrogating FlyBase
-
St Pierre, S. E., Ponting, L., Stefancsik, R., McQuilton, P. and the FlyBase Consortium. (2014) FlyBase 102-advanced approaches to interrogating FlyBase. Nucleic Acids Res., 42, D780-D788.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D780-D788
-
-
The FlyBase Consortium1
St Pierre, S.E.2
Ponting, L.3
Stefancsik, R.4
McQuilton, P.5
-
2
-
-
34250873404
-
Sequence fnishing and mapping of Drosophila melanogaster heterochromatin
-
Hoskins, R. A., Carlson, J. W., Kennedy, C., Acevedo, D., Evans-Holm, M., Frise, E., Wan, K. H., Park, S., Mendez-Lago, M., Rossi, F. et al. (2007) Sequence fnishing and mapping of Drosophila melanogaster heterochromatin. Science, 316, 1625-1628.
-
(2007)
Science
, vol.316
, pp. 1625-1628
-
-
Hoskins, R.A.1
Carlson, J.W.2
Kennedy, C.3
Acevedo, D.4
Evans-Holm, M.5
Frise, E.6
Wan, K.H.7
Park, S.8
Mendez-Lago, M.9
Rossi, F.10
-
3
-
-
67649292737
-
Unlocking the secrets of the genome
-
Celniker, S. E., Dillon, L. A., Gerstein, M. B., Gunsalus, K. C., Henikoff, S., Karpen, G. H., Kellis, M., Lai, E. C., Lieb, J. D., MacAlpine, D. M. et al. (2009) Unlocking the secrets of the genome. Nature, 459, 927-930.
-
(2009)
Nature
, vol.459
, pp. 927-930
-
-
Celniker, S.E.1
Dillon, L.A.2
Gerstein, M.B.3
Gunsalus, K.C.4
Henikoff, S.5
Karpen, G.H.6
Kellis, M.7
Lai, E.C.8
Lieb, J.D.9
MacAlpine, D.M.10
-
4
-
-
84891804649
-
Database resources of the national center for biotechnology information
-
NCBI Resource Coordinators. (2014) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 42, D7-D17.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D7-D17
-
-
NCBI Resource Coordinators1
-
5
-
-
84862196096
-
The modENCODE Data Coordination Center: Lessons in harvesting comprehensive experimental details
-
Washington, N. L., Stinson, E. O., Perry, M. D., Ruzanov, P., Contrino, S., Smith, R., Zha, Z., Lyne, R., Carr, A., Lloyd, P. et al. (2011) The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details. Database, 2011, bar023.
-
(2011)
Database
, vol.2011
, pp. bar023
-
-
Washington, N.L.1
Stinson, E.O.2
Perry, M.D.3
Ruzanov, P.4
Contrino, S.5
Smith, R.6
Zha, Z.7
Lyne, R.8
Carr, A.9
Lloyd, P.10
-
6
-
-
84862188358
-
modMine: Flexible access to modENCODE data
-
Contrino, S., Smith, R. N., Butano, D., Carr, A., Hu, F., Lyne, R., Rutherford, K., Kalderimis, A., Sullivan, J., Carbon, S. et al. (2012) modMine: flexible access to modENCODE data. Nucleic Acids Res., 40, D1082-D1088.
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. D1082-D1088
-
-
Contrino, S.1
Smith, R.N.2
Butano, D.3
Carr, A.4
Hu, F.5
Lyne, R.6
Rutherford, K.7
Kalderimis, A.8
Sullivan, J.9
Carbon, S.10
-
7
-
-
84891771466
-
The UCSC Genome Browser database: 2014 update
-
Karolchik, D., Barber, G. P., Casper, J., Clawson, H., Cline, M. S., Diekhans, M., Dreszer, T. R., Fujita, P. A., Guruvadoo, L., Haeussler, M. et al. (2014) The UCSC Genome Browser database: 2014 update. Nucleic Acids Res., 42, D764-D770.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D764-D770
-
-
Karolchik, D.1
Barber, G.P.2
Casper, J.3
Clawson, H.4
Cline, M.S.5
Diekhans, M.6
Dreszer, T.R.7
Fujita, P.A.8
Guruvadoo, L.9
Haeussler, M.10
-
8
-
-
0034708480
-
The Genome Sequence of Drosophila melanogaster
-
Adams, M. D., Celniker, S. E., Holt, R. A., Evans, C. A., Gocayne, J. D., Amanatides, P. G., Scherer, S. E., Li, P. W., Hoskins, R. A., Galle, R. F. et al. (2000) The Genome Sequence of Drosophila melanogaster. Science, 287, 2185-2195.
-
(2000)
Science
, vol.287
, pp. 2185-2195
-
-
Adams, M.D.1
Celniker, S.E.2
Holt, R.A.3
Evans, C.A.4
Gocayne, J.D.5
Amanatides, P.G.6
Scherer, S.E.7
Li, P.W.8
Hoskins, R.A.9
Galle, R.F.10
-
9
-
-
0034708758
-
A whole-genome assembly of Drosophila
-
Myers, E. W., Sutton, G. G., Delcher, A. L., Dew, I. M., Fasulo, D. P., Flanigan, M. J., Kravitz, S. A., Mobarry, C. M., Reinert, K. H., Remington, K. A. et al. (2000) A whole-genome assembly of Drosophila. Science, 287, 2196-2203.
-
(2000)
Science
, vol.287
, pp. 2196-2203
-
-
Myers, E.W.1
Sutton, G.G.2
Delcher, A.L.3
Dew, I.M.4
Fasulo, D.P.5
Flanigan, M.J.6
Kravitz, S.A.7
Mobarry, C.M.8
Reinert, K.H.9
Remington, K.A.10
-
10
-
-
0028338677
-
Genetic analysis of the brahma gene of Drosophila melanogaster and polytene chromosome subdivisions 72AB
-
Brizuela, B. J., Elfring, L., Ballard, J., Tamkun, J. W. and Kennison, J. A. (1994) Genetic analysis of the brahma gene of Drosophila melanogaster and polytene chromosome subdivisions 72AB. Genetics, 137, 803-813.
-
(1994)
Genetics
, vol.137
, pp. 803-813
-
-
Brizuela, B.J.1
Elfring, L.2
Ballard, J.3
Tamkun, J.W.4
Kennison, J.A.5
-
11
-
-
0012340085
-
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
-
RESEARCH0079
-
Celniker, S. E., Wheeler, D. A., Kronmiller, B., Carlson, J. W., Halpern, A., Patel, S., Adams, M., Champe, M., Dugan, S. P., Frise, E. et al. (2002) Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence. Genome Biol., 3, RESEARCH0079.
-
(2002)
Genome Biol.
, vol.3
-
-
Celniker, S.E.1
Wheeler, D.A.2
Kronmiller, B.3
Carlson, J.W.4
Halpern, A.5
Patel, S.6
Adams, M.7
Champe, M.8
Dugan, S.P.9
Frise, E.10
-
12
-
-
84870529207
-
Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster
-
He, B., Caudy, A., Parsons, L., Rosebrock, A., Pane, A., Raj, S. and Wieschaus, E. (2012) Mapping the pericentric heterochromatin by comparative genomic hybridization analysis and chromosome deletions in Drosophila melanogaster. Genome Res., 22, 2507-2519.
-
(2012)
Genome Res.
, vol.22
, pp. 2507-2519
-
-
He, B.1
Caudy, A.2
Parsons, L.3
Rosebrock, A.4
Pane, A.5
Raj, S.6
Wieschaus, E.7
-
13
-
-
84891797680
-
GenBank
-
Benson, D. A., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. and Sayers, E. W. (2014) GenBank. Nucleic Acids Res., 42, D32-D37.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D32-D37
-
-
Benson, D.A.1
Clark, K.2
Karsch-Mizrachi, I.3
Lipman, D.J.4
Ostell, J.5
Sayers, E.W.6
-
14
-
-
84891767394
-
RefSeq: An update on mammalian reference sequences
-
Pruitt, K. D., Brown, G. R., Hiatt, S. M., Thibaud-Nissen, F., Astashyn, A., Ermolaeva, O., Farrell, C. M., Hart, J., Landrum, M. J., McGarvey, K. M. et al. (2014) RefSeq: an update on mammalian reference sequences. Nucleic Acids Res., 42, D756-D763.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D756-D763
-
-
Pruitt, K.D.1
Brown, G.R.2
Hiatt, S.M.3
Thibaud-Nissen, F.4
Astashyn, A.5
Ermolaeva, O.6
Farrell, C.M.7
Hart, J.8
Landrum, M.J.9
McGarvey, K.M.10
-
15
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
16
-
-
18644378331
-
The generic genome browser: A building block for a model organism system database
-
Stein, L. D., Mungall, C., Shu, S., Caudy, M., Mangone, M., Day, A., Nickerson, E., Stajich, J. E., Harris, T. W., Arva, A. et al. (2002) The generic genome browser: a building block for a model organism system database. Genome Res., 12, 1599-1610.
-
(2002)
Genome Res.
, vol.12
, pp. 1599-1610
-
-
Stein, L.D.1
Mungall, C.2
Shu, S.3
Caudy, M.4
Mangone, M.5
Day, A.6
Nickerson, E.7
Stajich, J.E.8
Harris, T.W.9
Arva, A.10
-
17
-
-
46649115430
-
Splign: Algorithms for computing spliced alignments with identification of paralogs
-
Kapustin, Y., Souvorov, A., Tatusova, T. and Lipman, D. (2008) Splign: algorithms for computing spliced alignments with identification of paralogs. Biol. Direct, 3, 20.
-
(2008)
Biol. Direct
, vol.3
, pp. 20
-
-
Kapustin, Y.1
Souvorov, A.2
Tatusova, T.3
Lipman, D.4
-
18
-
-
79953043801
-
The developmental transcriptome of Drosophila melanogaster
-
Graveley, B. R., Brooks, A. N., Carlson, J. W., Duff, M. O., Landolin, J. M., Yang, L., Artieri, C. G., van Baren, M. J., Boley, N., Booth, B. W. et al. (2011) The developmental transcriptome of Drosophila melanogaster. Nature, 471, 473-479.
-
(2011)
Nature
, vol.471
, pp. 473-479
-
-
Graveley, B.R.1
Brooks, A.N.2
Carlson, J.W.3
Duff, M.O.4
Landolin, J.M.5
Yang, L.6
Artieri, C.G.7
Van Baren, M.J.8
Boley, N.9
Booth, B.W.10
-
19
-
-
84907401383
-
Diversity and dynamics of the Drosophila transcriptome
-
Brown, J. B., Boley, N., Eisman, R., May, G. E., Stoiber, M. H., Duff, M. O., Booth, B. W., Wen, J., Park, S., Suzuki, A. M. et al. (2014) Diversity and dynamics of the Drosophila transcriptome. Nature, 512, 393-399.
-
(2014)
Nature
, vol.512
, pp. 393-399
-
-
Brown, J.B.1
Boley, N.2
Eisman, R.3
May, G.E.4
Stoiber, M.H.5
Duff, M.O.6
Booth, B.W.7
Wen, J.8
Park, S.9
Suzuki, A.M.10
-
20
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L. and Wold, B. (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat. Methods, 5, 621-628.
-
(2008)
Nat. Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
21
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson, W. R. and Lipman, D. J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci. U. S. A., 85, 2444-2448.
-
(1988)
Proc. Natl Acad. Sci. U. S. A.
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
22
-
-
34547844136
-
A Chado case study: An ontology-based modular schema for representing genome-associated biological information
-
Mungall, C. J. and Emmert, D. B. (2007) A Chado case study: an ontology-based modular schema for representing genome-associated biological information. Bioinformatics, 23, i337-i346.
-
(2007)
Bioinformatics
, vol.23
, pp. i337-i346
-
-
Mungall, C.J.1
Emmert, D.B.2
-
23
-
-
84875628769
-
Using GBrowse 2 to visualize and share next-generation sequence data
-
Stein, L. D. (2013) Using GBrowse 2 to visualize and share next-generation sequence data. Brief. Bioinform., 14, 162-171.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 162-171
-
-
Stein, L.D.1
-
24
-
-
84891768365
-
Ensembl 2014
-
Flicek, P., Amode, M. R., Barrell, D., Beal, K., Billis, K., Brent, S., Carvalho-Silva, D., Clapham, P., Coates, G., Fitzgerald, S. et al. (2014) Ensembl 2014. Nucleic Acids Res., 42, D749-D755.
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. D749-D755
-
-
Flicek, P.1
Amode, M.R.2
Barrell, D.3
Beal, K.4
Billis, K.5
Brent, S.6
Carvalho-Silva, D.7
Clapham, P.8
Coates, G.9
Fitzgerald, S.10
|