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Volumn 14, Issue 2, 2013, Pages 162-171

Using GBrowse 2.0 to visualize and share next-generation sequence data

Author keywords

Bioinformatics; Data sharing; Data visualization; DNA sequencing; Genome browser; Genomics

Indexed keywords

ANIMAL; ARTICLE; BIOLOGY; COMPUTER GRAPHICS; COMPUTER PROGRAM; DATA STORAGE DEVICE; GENETIC DATABASE; HIGH THROUGHPUT SEQUENCING; HUMAN; INFORMATION PROCESSING; INFORMATION RETRIEVAL; INTERNET; SEQUENCE ALIGNMENT; STATISTICS;

EID: 84875628769     PISSN: 14675463     EISSN: 14774054     Source Type: Journal    
DOI: 10.1093/bib/bbt001     Document Type: Article
Times cited : (93)

References (11)
  • 1
    • 18644378331 scopus 로고    scopus 로고
    • The generic genome browser: a building block for a model organism system database
    • Stein LD, Mungall C, Shu S, et al. The generic genome browser: a building block for a model organism system database. Genome Res 2002;12(10):1599-610.
    • (2002) Genome Res , vol.12 , Issue.10 , pp. 1599-1610
    • Stein, L.D.1    Mungall, C.2    Shu, S.3
  • 2
    • 34547844136 scopus 로고    scopus 로고
    • FlyBase Consortium; A Chado case study: an ontology-based modular schema for representing genome-associated biological information
    • Mungall CJ, Emmert DB; FlyBase Consortium; A Chado case study: an ontology-based modular schema for representing genome-associated biological information. Bioinformatics 2007;23(13):i337-46.
    • (2007) Bioinformatics , vol.23 , Issue.13
    • Mungall, C.J.1    Emmert, D.B.2
  • 4
    • 24144478551 scopus 로고    scopus 로고
    • SynBrowse: a synteny browser for comparative sequence analysis
    • Pan X, Stein L, Brendel V. SynBrowse: a synteny browser for comparative sequence analysis. Bioinformatics 2005; 21(17):3461-8.
    • (2005) Bioinformatics , vol.21 , Issue.17 , pp. 3461-3468
    • Pan, X.1    Stein, L.2    Brendel, V.3
  • 5
    • 70449353650 scopus 로고    scopus 로고
    • CMap 1.01: a comparative mapping application for the Internet
    • Youens-Clark K, Faga B, Yap IV, et al. CMap 1.01: a comparative mapping application for the Internet. Bioinformatics 2009;25(22):3040-2.
    • (2009) Bioinformatics , vol.25 , Issue.22 , pp. 3040-3042
    • Youens-Clark, K.1    Faga, B.2    Yap, I.V.3
  • 6
    • 80052323483 scopus 로고    scopus 로고
    • Integrating diverse databases into an unified analysis framework: a Galaxy approach
    • Blankenberg D, Coraor N, Von Kuster G, et al. Integrating diverse databases into an unified analysis framework: a Galaxy approach. Database 2011.
    • (2011) Database
    • Blankenberg, D.1    Coraor, N.2    Von Kuster, G.3
  • 7
    • 0012306021 scopus 로고    scopus 로고
    • Apollo: a sequence annotation editor
    • Lewis SE, Searle SM, Harris N, et al. Apollo: a sequence annotation editor. Genome Biol 2002;3(12):1-14.
    • (2002) Genome Biol , vol.3 , Issue.12 , pp. 1-14
    • Lewis, S.E.1    Searle, S.M.2    Harris, N.3
  • 8
    • 38049057159 scopus 로고    scopus 로고
    • MAKER: an easy-touse annotation pipeline designed for emerging model organism genomes
    • Cantarel BL, Korf I, Robb SM, et al. MAKER: an easy-touse annotation pipeline designed for emerging model organism genomes. GenomeRes 2008;18(1):188-96.
    • (2008) GenomeRes , vol.18 , Issue.1 , pp. 188-196
    • Cantarel, B.L.1    Korf, I.2    Robb, S.M.3
  • 9
    • 84855410433 scopus 로고    scopus 로고
    • BioMart: a data federation framework for large collaborative projects
    • Zhang J, Haider S, Baran J, et al. BioMart: a data federation framework for large collaborative projects. Database 2011.
    • (2011) Database
    • Zhang, J.1    Haider, S.2    Baran, J.3
  • 10
    • 69749083447 scopus 로고    scopus 로고
    • JBrowse: a next-generation genome browser
    • Skinner ME, Uzilov AV, Stein LD, et al. JBrowse: a next-generation genome browser. Genome Res 2009;19(9): 1630-8.
    • (2009) Genome Res , vol.19 , Issue.9 , pp. 1630-1638
    • Skinner, M.E.1    Uzilov, A.V.2    Stein, L.D.3
  • 11
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • 1000 Genome Project Data Processing Subgroup
    • Li H, Handsaker B, Wysoker A, et al.; 1000 Genome Project Data Processing Subgroup. The Sequence Alignment/Map format and SAMtools. Bioinformatics 2009; 25(16):2078-9.
    • (2009) Bioinformatics , vol.25 , Issue.16 , pp. 2078-2079
    • Li, H.1    Handsaker, B.2    Wysoker, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.