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Volumn 81, Issue 23, 2015, Pages 7993-8007

Genome-wide RNA sequencing analysis of quorum sensing-controlled regulons in the plant-associated Burkholderia glumae PG1 strain

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIOCHEMISTRY; LIPASES; RNA; SYNTHESIS (CHEMICAL);

EID: 84946035741     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.01043-15     Document Type: Article
Times cited : (38)

References (86)
  • 1
    • 27944442272 scopus 로고    scopus 로고
    • Quorum sensing: cell-to-cell communication in bacteria
    • Waters CM, Bassler BL. 2005. Quorum sensing: cell-to-cell communication in bacteria. Annu Rev Cell Dev Biol 21:319-346. http://dx.doi.org/10.1146/annurev.cellbio.21.012704.131001.
    • (2005) Annu Rev Cell Dev Biol , vol.21 , pp. 319-346
    • Waters, C.M.1    Bassler, B.L.2
  • 2
    • 79959765628 scopus 로고    scopus 로고
    • Quorum sensing: regulating the regulators
    • Frederix M, Downie AJ. 2011. Quorum sensing: regulating the regulators. Adv Microb Physiol 58:23-80. http://dx.doi.org/10.1016/B978-0-12-381043-4.00002-7.
    • (2011) Adv Microb Physiol , vol.58 , pp. 23-80
    • Frederix, M.1    Downie, A.J.2
  • 3
    • 73349114916 scopus 로고    scopus 로고
    • Bacterial quorum-sensing network architectures
    • Ng WL, Bassler BL. 2009. Bacterial quorum-sensing network architectures. Annu Rev Genet 43:197-222. http://dx.doi.org/10.1146/annurev-genet-102108-134304.
    • (2009) Annu Rev Genet , vol.43 , pp. 197-222
    • Ng, W.L.1    Bassler, B.L.2
  • 4
    • 63749103609 scopus 로고    scopus 로고
    • New developments in microbial interspecies signaling
    • Shank EA, Kolter R. 2009. New developments in microbial interspecies signaling. Curr Opin Microbiol 12:205-214. http://dx.doi.org/10.1016/j.mib.2009.01.003.
    • (2009) Curr Opin Microbiol , vol.12 , pp. 205-214
    • Shank, E.A.1    Kolter, R.2
  • 5
    • 0034770056 scopus 로고    scopus 로고
    • Quorum sensing in bacteria
    • Miller MB, Bassler BL. 2001. Quorum sensing in bacteria. Annu Rev Microbiol 55:165-199. http://dx.doi.org/10.1146/annurev.micro.55.1.165.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 165-199
    • Miller, M.B.1    Bassler, B.L.2
  • 6
    • 0031923690 scopus 로고    scopus 로고
    • In vivo evidence that S-adenosylmethionine and fatty acid synthesis intermediates are the substrates for the LuxI family of autoinducer synthases
    • Val DL, Cronan JE, Jr. 1998. In vivo evidence that S-adenosylmethionine and fatty acid synthesis intermediates are the substrates for the LuxI family of autoinducer synthases. J Bacteriol 180:2644-2651.
    • (1998) J Bacteriol , vol.180 , pp. 2644-2651
    • Val, D.L.1    Cronan, J.E.2
  • 7
    • 79953284743 scopus 로고    scopus 로고
    • Burkholderia glumae: next major pathogen of rice?
    • Ham JH, Melanson RA, Rush MC. 2011. Burkholderia glumae: next major pathogen of rice? Mol Plant Pathol 12:329-339. http://dx.doi.org/10.1111/j.1364-3703.2010.00676.x.
    • (2011) Mol Plant Pathol , vol.12 , pp. 329-339
    • Ham, J.H.1    Melanson, R.A.2    Rush, M.C.3
  • 8
    • 33947257935 scopus 로고    scopus 로고
    • Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium
    • Cho HS, Park SY, Ryu CM, Kim JF, Kim JG, Park SH. 2007. Interference of quorum sensing and virulence of the rice pathogen Burkholderia glumae by an engineered endophytic bacterium. FEMS Microbiol Ecol 60:14-23. http://dx.doi.org/10.1111/j.1574-6941.2007.00280.x.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 14-23
    • Cho, H.S.1    Park, S.Y.2    Ryu, C.M.3    Kim, J.F.4    Kim, J.G.5    Park, S.H.6
  • 9
    • 0043126983 scopus 로고    scopus 로고
    • Toxoflavin produced by Burkholderia glumae causing rice grain rot is responsible for inducing bacterial wilt in many field crops
    • Jeong Y, Kim J, Kim S, Kang Y, Nagamatsu T, Hwang I. 2003. Toxoflavin produced by Burkholderia glumae causing rice grain rot is responsible for inducing bacterial wilt in many field crops. Plant Dis 87:890-895. http://dx.doi.org/10.1094/PDIS.2003.87.8.890.
    • (2003) Plant Dis , vol.87 , pp. 890-895
    • Jeong, Y.1    Kim, J.2    Kim, S.3    Kang, Y.4    Nagamatsu, T.5    Hwang, I.6
  • 11
    • 8544231380 scopus 로고    scopus 로고
    • Quorum sensing and the LysR-type transcriptional activator ToxR regulate toxoflavin biosynthesis and transport in Burkholderia glumae
    • Kim J, Kim JG, Kang Y, Jang JY, Jog GJ, Lim JY, Kim S, Suga H, Nagamatsu T, Hwang I. 2004. Quorum sensing and the LysR-type transcriptional activator ToxR regulate toxoflavin biosynthesis and transport in Burkholderia glumae. Mol Microbiol 54:921-934. http://dx.doi.org/10.1111/j.1365-2958.2004.04338.x.
    • (2004) Mol Microbiol , vol.54 , pp. 921-934
    • Kim, J.1    Kim, J.G.2    Kang, Y.3    Jang, J.Y.4    Jog, G.J.5    Lim, J.Y.6    Kim, S.7    Suga, H.8    Nagamatsu, T.9    Hwang, I.10
  • 12
    • 3042826857 scopus 로고    scopus 로고
    • Molecular characterization of the tox operon involved in toxoflavin biosynthesis of Burkholderia glumae
    • Suzuki F, Sawada H, Azegami K, Tsuchiya K. 2004. Molecular characterization of the tox operon involved in toxoflavin biosynthesis of Burkholderia glumae. J Gen Plant Pathol 70:97-107. http://dx.doi.org/10.1007/s10327-003-0096-1.
    • (2004) J Gen Plant Pathol , vol.70 , pp. 97-107
    • Suzuki, F.1    Sawada, H.2    Azegami, K.3    Tsuchiya, K.4
  • 13
    • 33947260668 scopus 로고    scopus 로고
    • Regulation of polar flagellum genes is mediated by quorum sensing and FlhDC in Burkholderia glumae
    • Kim J, Kang Y, Choi O, Jeong Y, Jeong JE, Lim JY, Kim M, Moon JS, Suga H, Hwang I. 2007. Regulation of polar flagellum genes is mediated by quorum sensing and FlhDC in Burkholderia glumae. Mol Microbiol 64:165-179. http://dx.doi.org/10.1111/j.1365-2958.2007.05646.x.
    • (2007) Mol Microbiol , vol.64 , pp. 165-179
    • Kim, J.1    Kang, Y.2    Choi, O.3    Jeong, Y.4    Jeong, J.E.5    Lim, J.Y.6    Kim, M.7    Moon, J.S.8    Suga, H.9    Hwang, I.10
  • 14
    • 38149077393 scopus 로고    scopus 로고
    • Proteomic analysis of the proteins regulated by HrpB from the plant pathogenic bacterium Burkholderia glumae
    • Kang Y, Kim J, Kim S, Kim H, Lim JY, Kim M, Kwak J, Moon JS, Hwang I. 2008. Proteomic analysis of the proteins regulated by HrpB from the plant pathogenic bacterium Burkholderia glumae. Proteomics 8:106-121. http://dx.doi.org/10.1002/pmic.200700244.
    • (2008) Proteomics , vol.8 , pp. 106-121
    • Kang, Y.1    Kim, J.2    Kim, S.3    Kim, H.4    Lim, J.Y.5    Kim, M.6    Kwak, J.7    Moon, J.S.8    Hwang, I.9
  • 15
    • 34547770722 scopus 로고    scopus 로고
    • Involvement of a quorum-sensing-regulated lipase secreted by a clinical isolate of Burkholderia glumae in severe disease symptoms in rice
    • Devescovi G, Bigirimana J, Degrassi G, Cabrio L, LiPuma JJ, Kim J, Hwang I, Venturi V. 2007. Involvement of a quorum-sensing-regulated lipase secreted by a clinical isolate of Burkholderia glumae in severe disease symptoms in rice. Appl Environ Microbiol 73:4950-4958. http://dx.doi.org/10.1128/AEM.00105-07.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 4950-4958
    • Devescovi, G.1    Bigirimana, J.2    Degrassi, G.3    Cabrio, L.4    LiPuma, J.J.5    Kim, J.6    Hwang, I.7    Venturi, V.8
  • 16
    • 67649404857 scopus 로고    scopus 로고
    • The quorum sensing-dependent gene katG of Burkholderia glumae is important for protection from visible light
    • Chun H, Choi O, Goo E, Kim N, Kim H, Kang Y, Kim J, Moon JS, Hwang I. 2009. The quorum sensing-dependent gene katG of Burkholderia glumae is important for protection from visible light. J Bacteriol 191: 4152-4157. http://dx.doi.org/10.1128/JB.00227-09.
    • (2009) J Bacteriol , vol.191 , pp. 4152-4157
    • Chun, H.1    Choi, O.2    Goo, E.3    Kim, N.4    Kim, H.5    Kang, Y.6    Kim, J.7    Moon, J.S.8    Hwang, I.9
  • 17
    • 47249154853 scopus 로고    scopus 로고
    • Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae
    • Degrassi G, Devescovi G, Kim J, Hwang I, Venturi V. 2008. Identification, characterization and regulation of two secreted polygalacturonases of the emerging rice pathogen Burkholderia glumae. FEMS Microbiol Ecol 65:251-262. http://dx.doi.org/10.1111/j.1574-6941.2008.00516.x.
    • (2008) FEMS Microbiol Ecol , vol.65 , pp. 251-262
    • Degrassi, G.1    Devescovi, G.2    Kim, J.3    Hwang, I.4    Venturi, V.5
  • 18
    • 84897042157 scopus 로고    scopus 로고
    • Quorum sensing controls flagellar morphogenesis in Burkholderia glumae
    • Jang MS, Goo E, An JH, Kim J, Hwang I. 2014. Quorum sensing controls flagellar morphogenesis in Burkholderia glumae. PLoS One 9:e84831. http://dx.doi.org/10.1371/journal.pone.0084831.
    • (2014) PLoS One , vol.9
    • Jang, M.S.1    Goo, E.2    An, J.H.3    Kim, J.4    Hwang, I.5
  • 19
    • 0028877116 scopus 로고
    • Influence of Pseudomonas aeruginosa exoproducts on virulence factor production in Burkholderia cepacia: evidence of interspecies communication
    • McKenney D, Brown KE, Allison DG. 1995. Influence of Pseudomonas aeruginosa exoproducts on virulence factor production in Burkholderia cepacia: evidence of interspecies communication. J Bacteriol 177:6989-6992.
    • (1995) J Bacteriol , vol.177 , pp. 6989-6992
    • McKenney, D.1    Brown, K.E.2    Allison, D.G.3
  • 20
    • 33644872987 scopus 로고    scopus 로고
    • Quorum sensing in the genus Burkholderia
    • Eberl L. 2006. Quorum sensing in the genus Burkholderia. Int J Med Microbiol 296:103-110. http://dx.doi.org/10.1016/j.ijmm.2006.01.035.
    • (2006) Int J Med Microbiol , vol.296 , pp. 103-110
    • Eberl, L.1
  • 22
    • 84884503993 scopus 로고    scopus 로고
    • Quorum sensing in Burkholderia
    • Vasil ML, Darwin AJ (ed), ASM Press, Washington, DC
    • Majerczyk C, Greenberg E, Chandler J. 2013. Quorum sensing in Burkholderia, p 40-57. In Vasil ML, Darwin AJ (ed), Regulation of bacterial virulence. ASM Press, Washington, DC.
    • (2013) Regulation of bacterial virulence , pp. 40-57
    • Majerczyk, C.1    Greenberg, E.2    Chandler, J.3
  • 23
    • 66149150216 scopus 로고    scopus 로고
    • Complete genome sequence of Burkholderia glumae BGR1
    • Lim J, Lee TH, Nahm BH, Choi YD, Kim M, Hwang I. 2009. Complete genome sequence of Burkholderia glumae BGR1. J Bacteriol 191:3758-3759. http://dx.doi.org/10.1128/JB.00349-09.
    • (2009) J Bacteriol , vol.191 , pp. 3758-3759
    • Lim, J.1    Lee, T.H.2    Nahm, B.H.3    Choi, Y.D.4    Kim, M.5    Hwang, I.6
  • 24
    • 77954601007 scopus 로고    scopus 로고
    • Proteomic analysis of quorum sensing-dependent proteins in Burkholderia glumae
    • Goo E, Kang Y, Kim H, Hwang I. 2010. Proteomic analysis of quorum sensing-dependent proteins in Burkholderia glumae. J Proteome Res 9:3184-3199. http://dx.doi.org/10.1021/pr100045n.
    • (2010) J Proteome Res , vol.9 , pp. 3184-3199
    • Goo, E.1    Kang, Y.2    Kim, H.3    Hwang, I.4
  • 25
    • 67749124085 scopus 로고    scopus 로고
    • Biochemical evidence for ToxR and ToxJ binding to the tox operons of Burkholderia glumae and mutational analysis of ToxR
    • Kim J, Oh J, Choi O, Kang Y, Kim H, Goo E, Ma J, Nagamatsu T, Moon JS, Hwang I. 2009. Biochemical evidence for ToxR and ToxJ binding to the tox operons of Burkholderia glumae and mutational analysis of ToxR. J Bacteriol 191:4870-4878. http://dx.doi.org/10.1128/JB.01561-08.
    • (2009) J Bacteriol , vol.191 , pp. 4870-4878
    • Kim, J.1    Oh, J.2    Choi, O.3    Kang, Y.4    Kim, H.5    Goo, E.6    Ma, J.7    Nagamatsu, T.8    Moon, J.S.9    Hwang, I.10
  • 26
    • 84927514438 scopus 로고    scopus 로고
    • Complete genome sequence of the lipase producing strain Burkholderia glumae PG1
    • Voget S, Knapp A, Poehlein A, Vollstedt C, Streit WR, Daniel R, Jaeger KE. 2015. Complete genome sequence of the lipase producing strain Burkholderia glumae PG1. J Biotechnol 204:3-4. http://dx.doi.org/10.1016/j.jbiotec.2015.03.022.
    • (2015) J Biotechnol , vol.204 , pp. 3-4
    • Voget, S.1    Knapp, A.2    Poehlein, A.3    Vollstedt, C.4    Streit, W.R.5    Daniel, R.6    Jaeger, K.E.7
  • 27
    • 84869834188 scopus 로고    scopus 로고
    • The AHL-and BDSFdependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111
    • Schmid N, Pessi G, Deng Y, Aguilar C, Carlier AL, Grunau A, Omasits U, Zhang LH, Ahrens CH, Eberl L. 2012. The AHL-and BDSFdependent quorum sensing systems control specific and overlapping sets of genes in Burkholderia cenocepacia H111. PLoS One 7:e49966. http://dx.doi.org/10.1371/journal.pone.0049966.
    • (2012) PLoS One , vol.7
    • Schmid, N.1    Pessi, G.2    Deng, Y.3    Aguilar, C.4    Carlier, A.L.5    Grunau, A.6    Omasits, U.7    Zhang, L.H.8    Ahrens, C.H.9    Eberl, L.10
  • 29
    • 84917676223 scopus 로고    scopus 로고
    • Investigation of quorum sensing-dependent gene expression in Burkholderia gladioli BSR3 through RNA-seq analyses
    • Kim S, Park J, Choi O, Kim J, Seo YS. 2014. Investigation of quorum sensing-dependent gene expression in Burkholderia gladioli BSR3 through RNA-seq analyses. J Microbiol Biotechnol 24:1609-1621. http://dx.doi.org/10.4014/jmb.1408.08064.
    • (2014) J Microbiol Biotechnol , vol.24 , pp. 1609-1621
    • Kim, S.1    Park, J.2    Choi, O.3    Kim, J.4    Seo, Y.S.5
  • 30
    • 84917707238 scopus 로고    scopus 로고
    • A cross-species comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei quorum sensing regulons
    • Majerczyk CD, Brittnacher MJ, Jacobs MA, Armour CD, Radey MC, Bunt R, Hayden HS, Bydalek R, Greenberg EP. 2014. A cross-species comparison of the Burkholderia pseudomallei, Burkholderia thailandensis, and Burkholderia mallei quorum sensing regulons. J Bacteriol 196:3862-3871. http://dx.doi.org/10.1128/JB.01974-14.
    • (2014) J Bacteriol , vol.196 , pp. 3862-3871
    • Majerczyk, C.D.1    Brittnacher, M.J.2    Jacobs, M.A.3    Armour, C.D.4    Radey, M.C.5    Bunt, R.6    Hayden, H.S.7    Bydalek, R.8    Greenberg, E.P.9
  • 31
    • 27644445124 scopus 로고    scopus 로고
    • Update on the Burkholderia cepacia complex
    • Lipuma JJ. 2005. Update on the Burkholderia cepacia complex. Curr Opin Pulm Med 11:528-533. http://dx.doi.org/10.1097/01.mcp.0000181475.85187.ed.
    • (2005) Curr Opin Pulm Med , vol.11 , pp. 528-533
    • Lipuma, J.J.1
  • 33
    • 63849306439 scopus 로고    scopus 로고
    • Immunity to Burkholderia pseudomallei
    • Wiersinga WJ, van der Poll T. 2009. Immunity to Burkholderia pseudomallei. Curr Opin Infect Dis 22:102-108. http://dx.doi.org/10.1097/QCO.0b013e328322e727.
    • (2009) Curr Opin Infect Dis , vol.22 , pp. 102-108
    • Wiersinga, W.J.1    van der Poll, T.2
  • 34
    • 84885703371 scopus 로고    scopus 로고
    • RNAseqbased transcriptome analysis of Burkholderia glumae quorum sensing
    • Kim S, Park J, Kim J, Lee J, Bang B, Hwang I, Seo YS. 2013. RNAseqbased transcriptome analysis of Burkholderia glumae quorum sensing. Plant Pathol J 29:249-259. http://dx.doi.org/10.5423/PPJ.OA.04.2013.0044.
    • (2013) Plant Pathol J , vol.29 , pp. 249-259
    • Kim, S.1    Park, J.2    Kim, J.3    Lee, J.4    Bang, B.5    Hwang, I.6    Seo, Y.S.7
  • 35
    • 84903814285 scopus 로고    scopus 로고
    • Understanding pathogenic Burkholderia glumae metabolic and signaling pathways within rice tissues through in vivo transcriptome analyses
    • Kim S, Park J, Lee J, Shin D, Park DS, Lim JS, Choi IY, Seo YS. 2014. Understanding pathogenic Burkholderia glumae metabolic and signaling pathways within rice tissues through in vivo transcriptome analyses. Gene 547:77-85. http://dx.doi.org/10.1016/j.gene.2014.06.029.
    • (2014) Gene , vol.547 , pp. 77-85
    • Kim, S.1    Park, J.2    Lee, J.3    Shin, D.4    Park, D.S.5    Lim, J.S.6    Choi, I.Y.7    Seo, Y.S.8
  • 37
    • 0030061698 scopus 로고    scopus 로고
    • Conserved cis-acting promoter elements are required for density-dependent transcription of Agrobacterium tumefaciens conjugal transfer genes
    • Fuqua C, Winans SC. 1996. Conserved cis-acting promoter elements are required for density-dependent transcription of Agrobacterium tumefaciens conjugal transfer genes. J Bacteriol 178:435-440.
    • (1996) J Bacteriol , vol.178 , pp. 435-440
    • Fuqua, C.1    Winans, S.C.2
  • 38
    • 0001179345 scopus 로고
    • Thermosensitive step associated with transfer of the Ti plasmid during conjugation: possible relation to transformation in crown gall
    • Tempe J, Petit A, Holsters M, Montagu M, Schell J. 1977. Thermosensitive step associated with transfer of the Ti plasmid during conjugation: possible relation to transformation in crown gall. Proc Natl Acad Sci U S A 74:2848-2849. http://dx.doi.org/10.1073/pnas.74.7.2848.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 2848-2849
    • Tempe, J.1    Petit, A.2    Holsters, M.3    Montagu, M.4    Schell, J.5
  • 40
    • 84906351618 scopus 로고    scopus 로고
    • RNA-seq in the broad host range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant
    • Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR. 2014. RNA-seq in the broad host range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant. Appl Environ Microbiol 80: 5655-5671. http://dx.doi.org/10.1128/AEM.01835-14.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 5655-5671
    • Krysciak, D.1    Grote, J.2    Rodriguez Orbegoso, M.3    Utpatel, C.4    Förstner, K.U.5    Li, L.6    Schmeisser, C.7    Krishnan, H.B.8    Streit, W.R.9
  • 41
    • 0000753693 scopus 로고
    • The relationship of pathogenicity in Pseudomonas solanacearum to colony appearance on a tetrazolium medium
    • Kelman A. 1954. The relationship of pathogenicity in Pseudomonas solanacearum to colony appearance on a tetrazolium medium. Phytopathology 44:693-695.
    • (1954) Phytopathology , vol.44 , pp. 693-695
    • Kelman, A.1
  • 42
    • 0028793123 scopus 로고
    • Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
    • Kovach ME, Elzer PH, Hill DS, Robertson GT, Farris MA, Roop RM, II, Peterson KM. 1995. Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes. Gene 166:175-176. http://dx.doi.org/10.1016/0378-1119(95)00584-1.
    • (1995) Gene , vol.166 , pp. 175-176
    • Kovach, M.E.1    Elzer, P.H.2    Hill, D.S.3    Robertson, G.T.4    Farris, M.A.5    Roop, R.M.6    Peterson, K.M.7
  • 43
    • 77952253375 scopus 로고    scopus 로고
    • ArcS, the cognate sensor kinase in an atypical Arc system of Shewanella oneidensis MR-1
    • Lassak J, Henche AL, Binnenkade L, Thormann KM. 2010. ArcS, the cognate sensor kinase in an atypical Arc system of Shewanella oneidensis MR-1. Appl Environ Microbiol 76:3263-3274. http://dx.doi.org/10.1128/AEM.00512-10.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 3263-3274
    • Lassak, J.1    Henche, A.L.2    Binnenkade, L.3    Thormann, K.M.4
  • 45
    • 0033960821 scopus 로고    scopus 로고
    • Extraction of violacein from Chromobacterium violaceum provides a new quantitative bioassay for N-acyl homoserine lactone autoinducers
    • Blosser RS, Gray KM. 2000. Extraction of violacein from Chromobacterium violaceum provides a new quantitative bioassay for N-acyl homoserine lactone autoinducers. J Microbiol Methods 40:47-55. http://dx.doi.org/10.1016/S0167-7012(99)00136-0.
    • (2000) J Microbiol Methods , vol.40 , pp. 47-55
    • Blosser, R.S.1    Gray, K.M.2
  • 46
    • 44249092117 scopus 로고    scopus 로고
    • Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil
    • Jacobs JL, Fasi AC, Ramette A, Smith JJ, Hammerschmidt R, Sundin GW. 2008. Identification and onion pathogenicity of Burkholderia cepacia complex isolates from the onion rhizosphere and onion field soil. Appl Environ Microbiol 74:3121-3129. http://dx.doi.org/10.1128/AEM.01941-07.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 3121-3129
    • Jacobs, J.L.1    Fasi, A.C.2    Ramette, A.3    Smith, J.J.4    Hammerschmidt, R.5    Sundin, G.W.6
  • 47
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: a flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114-2120. http://dx.doi.org/10.1093/bioinformatics/btu170.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 48
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2 Nat Methods 9:357-359. http://dx.doi.org/10.1038/nmeth.1923.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 49
    • 77955298482 scopus 로고    scopus 로고
    • baySeq: empirical Bayesian methods for identifying differential expression in sequence count data
    • Hardcastle TJ, Kelly KA. 2010. baySeq: empirical Bayesian methods for identifying differential expression in sequence count data. BMC Bioinformatics 11:422. http://dx.doi.org/10.1186/1471-2105-11-422.
    • (2010) BMC Bioinformatics , vol.11 , pp. 422
    • Hardcastle, T.J.1    Kelly, K.A.2
  • 50
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C(T) method
    • Schmittgen TD, Livak KJ. 2008. Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc 3:1101-1108. http://dx.doi.org/10.1038/nprot.2008.73.
    • (2008) Nat Protoc , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 53
    • 0036581160 scopus 로고    scopus 로고
    • Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR
    • Pfaffl MW, Horgan GW, Dempfle L. 2002. Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic Acids Res 30:e36. http://dx.doi.org/10.1093/nar/30.9.e36.
    • (2002) Nucleic Acids Res , vol.30
    • Pfaffl, M.W.1    Horgan, G.W.2    Dempfle, L.3
  • 54
    • 77950290213 scopus 로고    scopus 로고
    • The autoinducer synthase LqsA and putative sensor kinase LqsS regulate phagocyte interactions, extracellular filaments and a genomic island of Legionella pneumophila
    • Tiaden A, Spirig T, Sahr T, Wälti MA, Boucke K, Buchrieser C, Hilbi H. 2010. The autoinducer synthase LqsA and putative sensor kinase LqsS regulate phagocyte interactions, extracellular filaments and a genomic island of Legionella pneumophila. Environ Microbiol 12:1243-1259. http://dx.doi.org/10.1111/j.1462-2920.2010.02167.x.
    • (2010) Environ Microbiol , vol.12 , pp. 1243-1259
    • Tiaden, A.1    Spirig, T.2    Sahr, T.3    Wälti, M.A.4    Boucke, K.5    Buchrieser, C.6    Hilbi, H.7
  • 55
    • 84873191125 scopus 로고    scopus 로고
    • The Legionella pneumophila orphan sensor kinase LqsT regulates competence and pathogen-host interactions as a component of the LAI-1 circuit
    • Kessler A, Schell U, Sahr T, Tiaden A, Harrison C, Buchrieser C, Hilbi H. 2013. The Legionella pneumophila orphan sensor kinase LqsT regulates competence and pathogen-host interactions as a component of the LAI-1 circuit. Environ Microbiol 15:646-662. http://dx.doi.org/10.1111/j.1462-2920.2012.02889.x.
    • (2013) Environ Microbiol , vol.15 , pp. 646-662
    • Kessler, A.1    Schell, U.2    Sahr, T.3    Tiaden, A.4    Harrison, C.5    Buchrieser, C.6    Hilbi, H.7
  • 56
    • 84871444274 scopus 로고    scopus 로고
    • Dissection of quorumsensing genes in Burkholderia glumae reveals non-canonical regulation and the new regulatory gene tofM for toxoflavin production
    • Chen R, Barphagha IK, Karki HS, Ham JH. 2012. Dissection of quorumsensing genes in Burkholderia glumae reveals non-canonical regulation and the new regulatory gene tofM for toxoflavin production. PLoS One 7:e52150. http://dx.doi.org/10.1371/journal.pone.0052150.
    • (2012) PLoS One , vol.7
    • Chen, R.1    Barphagha, I.K.2    Karki, H.S.3    Ham, J.H.4
  • 57
    • 84988828571 scopus 로고    scopus 로고
    • Characterization of three types of quorum-sensing mutants in Burkholderia glumae strains isolated in Japan
    • Kato T, Morohoshi T, Tsushima S, Ikeda T. 2014. Characterization of three types of quorum-sensing mutants in Burkholderia glumae strains isolated in Japan. J Agric Sci 6:16-26.
    • (2014) J Agric Sci , vol.6 , pp. 16-26
    • Kato, T.1    Morohoshi, T.2    Tsushima, S.3    Ikeda, T.4
  • 59
    • 84876448504 scopus 로고    scopus 로고
    • Transcriptome analysis of acetyl-homoserine lactone-based quorum sensing regulation in Yersinia pestis
    • LaRock CN, Yu J, Horswill AR, Parsek MR, Minion FC. 2013. Transcriptome analysis of acetyl-homoserine lactone-based quorum sensing regulation in Yersinia pestis. PLoS One 8:e62337. http://dx.doi.org/10.1371/journal.pone.0062337.
    • (2013) PLoS One , vol.8
    • LaRock, C.N.1    Yu, J.2    Horswill, A.R.3    Parsek, M.R.4    Minion, F.C.5
  • 60
    • 84922071627 scopus 로고    scopus 로고
    • The hierarchy quorum sensing network in Pseudomonas aeruginosa
    • Lee J, Zhang L. 2014. The hierarchy quorum sensing network in Pseudomonas aeruginosa. Protein Cell 6:26-41. http://dx.doi.org/10.1007/s13238-014-0100-x.
    • (2014) Protein Cell , vol.6 , pp. 26-41
    • Lee, J.1    Zhang, L.2
  • 61
    • 33644963917 scopus 로고    scopus 로고
    • Regulation of quorum sensing in Pseudomonas
    • Venturi V. 2006. Regulation of quorum sensing in Pseudomonas. FEMS Microbiol Rev 30:274-291. http://dx.doi.org/10.1111/j.1574-6976.2005.00012.x.
    • (2006) FEMS Microbiol Rev , vol.30 , pp. 274-291
    • Venturi, V.1
  • 62
    • 0034807798 scopus 로고    scopus 로고
    • The cep quorum-sensing system of Burkholderia cepacia H111 controls biofilm formation and swarming motility
    • Huber B, Riedel K, Hentzer M, Heydorn A, Gotschlich A, Givskov M, Molin S, Eberl L. 2001. The cep quorum-sensing system of Burkholderia cepacia H111 controls biofilm formation and swarming motility. Microbiology 147:2517-2528. http://dx.doi.org/10.1099/00221287-147-9-2517.
    • (2001) Microbiology , vol.147 , pp. 2517-2528
    • Huber, B.1    Riedel, K.2    Hentzer, M.3    Heydorn, A.4    Gotschlich, A.5    Givskov, M.6    Molin, S.7    Eberl, L.8
  • 63
    • 32444446477 scopus 로고    scopus 로고
    • Quorum sensing in Yersinia enterocolitica controls swimming and swarming motility
    • Atkinson S, Chang CY, Sockett RE, Camara M, Williams P. 2006. Quorum sensing in Yersinia enterocolitica controls swimming and swarming motility. J Bacteriol 188:1451-1461. http://dx.doi.org/10.1128/JB.188.4.1451-1461.2006.
    • (2006) J Bacteriol , vol.188 , pp. 1451-1461
    • Atkinson, S.1    Chang, C.Y.2    Sockett, R.E.3    Camara, M.4    Williams, P.5
  • 64
    • 38649098772 scopus 로고    scopus 로고
    • Regulation of motility by the ExpR/Sin quorum-sensing system in Sinorhizobium meliloti
    • Hoang HH, Gurich N, González JE. 2008. Regulation of motility by the ExpR/Sin quorum-sensing system in Sinorhizobium meliloti. J Bacteriol 190:861-871. http://dx.doi.org/10.1128/JB.01310-07.
    • (2008) J Bacteriol , vol.190 , pp. 861-871
    • Hoang, H.H.1    Gurich, N.2    González, J.E.3
  • 65
    • 0036274158 scopus 로고    scopus 로고
    • Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli
    • Sperandio V, Torres AG, Kaper JB. 2002. Quorum sensing Escherichia coli regulators B and C (QseBC): a novel two-component regulatory system involved in the regulation of flagella and motility by quorum sensing in E. coli. Mol Microbiol 43:809-821. http://dx.doi.org/10.1046/j.1365-2958.2002.02803.x.
    • (2002) Mol Microbiol , vol.43 , pp. 809-821
    • Sperandio, V.1    Torres, A.G.2    Kaper, J.B.3
  • 67
    • 77952241133 scopus 로고    scopus 로고
    • The Salmonella enterica serovar Typhimurium QseB response regulator negatively regulates bacterial motility and swine colonization in the absence of the QseC sensor kinase
    • Bearson BL, Bearson SM, Lee IS, Brunelle BW. 2010. The Salmonella enterica serovar Typhimurium QseB response regulator negatively regulates bacterial motility and swine colonization in the absence of the QseC sensor kinase. Microb Pathog 48:214-219. http://dx.doi.org/10.1016/j.micpath.2010.03.005.
    • (2010) Microb Pathog , vol.48 , pp. 214-219
    • Bearson, B.L.1    Bearson, S.M.2    Lee, I.S.3    Brunelle, B.W.4
  • 68
    • 84906244658 scopus 로고    scopus 로고
    • The role of the QseC quorum-sensing sensor kinase in epinephrineenhanced motility and biofilm formation by Escherichia coli
    • Yang K, Meng J, Huang YC, Ye LH, Li GJ, Huang J, Chen HM. 2014. The role of the QseC quorum-sensing sensor kinase in epinephrineenhanced motility and biofilm formation by Escherichia coli. Cell Biochem Biophys 70:391-398. http://dx.doi.org/10.1007/s12013-014-9924-5.
    • (2014) Cell Biochem Biophys , vol.70 , pp. 391-398
    • Yang, K.1    Meng, J.2    Huang, Y.C.3    Ye, L.H.4    Li, G.J.5    Huang, J.6    Chen, H.M.7
  • 69
    • 0035957004 scopus 로고    scopus 로고
    • Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification
    • Planet PJ, Kachlany SC, DeSalle R, Figurski DH. 2001. Phylogeny of genes for secretion NTPases: identification of the widespread tadA subfamily and development of a diagnostic key for gene classification. Proc Natl Acad Sci U S A 98:2503-2508. http://dx.doi.org/10.1073/pnas.051436598.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 2503-2508
    • Planet, P.J.1    Kachlany, S.C.2    DeSalle, R.3    Figurski, D.H.4
  • 70
    • 0034999675 scopus 로고    scopus 로고
    • flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans
    • Kachlany SC, Planet PJ, Desalle R, Fine DH, Figurski DH, Kaplan JB. 2001. flp-1, the first representative of a new pilin gene subfamily, is required for non-specific adherence of Actinobacillus actinomycetemcomitans. Mol Microbiol 40:542-554. http://dx.doi.org/10.1046/j.1365-2958.2001.02422.x.
    • (2001) Mol Microbiol , vol.40 , pp. 542-554
    • Kachlany, S.C.1    Planet, P.J.2    Desalle, R.3    Fine, D.H.4    Figurski, D.H.5    Kaplan, J.B.6
  • 71
    • 34247221579 scopus 로고    scopus 로고
    • The tad locus: postcards from the widespread colonization island
    • Tomich M, Planet PJ, Figurski DH. 2007. The tad locus: postcards from the widespread colonization island. Nat Rev Microbiol 5:363-375. http://dx.doi.org/10.1038/nrmicro1636.
    • (2007) Nat Rev Microbiol , vol.5 , pp. 363-375
    • Tomich, M.1    Planet, P.J.2    Figurski, D.H.3
  • 72
    • 0036405357 scopus 로고    scopus 로고
    • Type IV pili and twitching motility
    • Mattick JS. 2002. Type IV pili and twitching motility. Annu Rev Microbiol 56:289-314. http://dx.doi.org/10.1146/annurev.micro.56.012302.160938.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 289-314
    • Mattick, J.S.1
  • 74
    • 8844241421 scopus 로고    scopus 로고
    • Type I secretion in gram-negative bacteria
    • Delepelaire P. 2004. Type I secretion in gram-negative bacteria. Biochim Biophys Acta 1694:149-161. http://dx.doi.org/10.1016/j.bbamcr.2004.05.001.
    • (2004) Biochim Biophys Acta , vol.1694 , pp. 149-161
    • Delepelaire, P.1
  • 76
    • 77955284562 scopus 로고    scopus 로고
    • Nooks and crannies in type VI secretion regulation
    • Bernard CS, Brunet YR, Gueguen E, Cascales E. 2010. Nooks and crannies in type VI secretion regulation. J Bacteriol 192:3850-3860. http://dx.doi.org/10.1128/JB.00370-10.
    • (2010) J Bacteriol , vol.192 , pp. 3850-3860
    • Bernard, C.S.1    Brunet, Y.R.2    Gueguen, E.3    Cascales, E.4
  • 77
    • 0036267740 scopus 로고    scopus 로고
    • Identification of genes that are associated with DNA repeats in prokaryotes
    • Jansen R, Embden J, Gaastra W, Schouls L. 2002. Identification of genes that are associated with DNA repeats in prokaryotes. Mol Microbiol 43: 1565-1575. http://dx.doi.org/10.1046/j.1365-2958.2002.02839.x.
    • (2002) Mol Microbiol , vol.43 , pp. 1565-1575
    • Jansen, R.1    Embden, J.2    Gaastra, W.3    Schouls, L.4
  • 78
    • 0034034401 scopus 로고    scopus 로고
    • Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria
    • Mojica FJ, Díez-Villaseñor C, Soria E, Juez G. 2000. Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria. Mol Microbiol 36:244-246. http://dx.doi.org/10.1046/j.1365-2958.2000.01838.x.
    • (2000) Mol Microbiol , vol.36 , pp. 244-246
    • Mojica, F.J.1    Díez-Villaseñor, C.2    Soria, E.3    Juez, G.4
  • 79
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek R, Kunin V, Hugenholtz P. 2008. CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 6:181-186. http://dx.doi.org/10.1038/nrmicro1793.
    • (2008) Nat Rev Microbiol , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 80
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini LA, Sontheimer EJ. 2010. Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463:568-571. http://dx.doi.org/10.1038/nature08703.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 82
    • 27544448126 scopus 로고    scopus 로고
    • Production of rhamnolipids by Pseudomonas aeruginosa
    • Soberón-Chávez G, Lépine F, Déziel E. 2005. Production of rhamnolipids by Pseudomonas aeruginosa. Appl Microbiol Biotechnol 68:718-725. http://dx.doi.org/10.1007/s00253-005-0150-3.
    • (2005) Appl Microbiol Biotechnol , vol.68 , pp. 718-725
    • Soberón-Chávez, G.1    Lépine, F.2    Déziel, E.3
  • 85
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan D. 1983. Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166:557-580. http://dx.doi.org/10.1016/S0022-2836(83)80284-8.
    • (1983) J Mol Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 86
    • 0028907832 scopus 로고
    • Activity of the Agrobacterium Ti plasmid conjugal transfer regulator TraR is inhibited by the product of the traM gene
    • Fuqua C, Burbea M, Winans SC. 1995. Activity of the Agrobacterium Ti plasmid conjugal transfer regulator TraR is inhibited by the product of the traM gene. J Bacteriol 177:1367-1373.
    • (1995) J Bacteriol , vol.177 , pp. 1367-1373
    • Fuqua, C.1    Burbea, M.2    Winans, S.C.3


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