-
1
-
-
0017187836
-
The nature of the accessible and buried surfaces in proteins
-
Chothia C: The nature of the accessible and buried surfaces in proteins. Journal of Molecular Biology 1976, 105(1):1-12.
-
(1976)
Journal of Molecular Biology
, vol.105
, Issue.1
, pp. 1-12
-
-
Chothia, C.1
-
2
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou KC: Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 2005, 21(1):10-19.
-
(2005)
Bioinformatics
, vol.21
, Issue.1
, pp. 10-19
-
-
Chou, K.C.1
-
4
-
-
79951518208
-
Some remarks on protein attribute prediction and pseudo amino acid composition
-
Chou KC: Some remarks on protein attribute prediction and pseudo amino acid composition. Journal of Theoretical Biology 2011, 273(1):236-247.
-
(2011)
Journal of Theoretical Biology
, vol.273
, Issue.1
, pp. 236-247
-
-
Chou, K.C.1
-
5
-
-
79952451732
-
High-accuracy prediction of protein structural class for low-similarity sequences based on predicted secondary structure
-
Zhang S, Ding S, Wang T: High-accuracy prediction of protein structural class for low-similarity sequences based on predicted secondary structure. Biochimie 2011, 93(4):710-714.
-
(2011)
Biochimie
, vol.93
, Issue.4
, pp. 710-714
-
-
Zhang, S.1
Ding, S.2
Wang, T.3
-
6
-
-
84862812419
-
A novel protein structural classes prediction method based on predicted secondary structure
-
Ding S, Zhang S, Li Y, Wang T: A novel protein structural classes prediction method based on predicted secondary structure. Biochimie 2012, 94(5):1166-1171.
-
(2012)
Biochimie
, vol.94
, Issue.5
, pp. 1166-1171
-
-
Ding, S.1
Zhang, S.2
Li, Y.3
Wang, T.4
-
7
-
-
67650739405
-
Prediction of protein structural classes by chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis
-
Li ZC, Zhou XB, Dai Z, Zou XY: Prediction of protein structural classes by chou's pseudo amino acid composition: approached using continuous wavelet transform and principal component analysis. Amino Acids 2009, 37:415-425.
-
(2009)
Amino Acids
, vol.37
, pp. 415-425
-
-
Li, Z.C.1
Zhou, X.B.2
Dai, Z.3
Zou, X.Y.4
-
8
-
-
0034141493
-
How good is prediction of protein structural class by the component-coupled method?
-
Wang ZX, Yuan Z: How good is prediction of protein structural class by the component-coupled method? Proteins: Structure, Function, and Bioinformatics 2000, 38(2):165-175.
-
(2000)
Proteins: Structure, Function, and Bioinformatics
, vol.38
, Issue.2
, pp. 165-175
-
-
Wang, Z.X.1
Yuan, Z.2
-
9
-
-
28444439947
-
Using logitboost classifier to predict protein structural classes
-
Cai YD, Feng K, Lu W, Chou K: Using logitboost classifier to predict protein structural classes. Theoretical Biollogy 2006, 238:172-176.
-
(2006)
Theoretical Biollogy
, vol.238
, pp. 172-176
-
-
Cai, Y.D.1
Feng, K.2
Lu, W.3
Chou, K.4
-
11
-
-
33646393287
-
Predicting protein structural class with adaboost learner
-
Niu B, Cai YD, Lu WC, Li GZ, Chou KC: Predicting protein structural class with adaboost learner. Protein and Peptide Letters 2006, 13(5):489-492.
-
(2006)
Protein and Peptide Letters
, vol.13
, Issue.5
, pp. 489-492
-
-
Niu, B.1
Cai, Y.D.2
Lu, W.C.3
Li, G.Z.4
Chou, K.C.5
-
13
-
-
77952309522
-
Using rotation forest for protein fold prediction problem: An empirical study
-
Dehzangi A, Phon-Amnuaisuk S, Manafi M, Safa S: Using rotation forest for protein fold prediction problem: An empirical study. Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics 2010, 217-227.
-
(2010)
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics
, pp. 217-227
-
-
Dehzangi, A.1
Phon-Amnuaisuk, S.2
Manafi, M.3
Safa, S.4
-
14
-
-
45649085108
-
Predicting protein structural class by svm with class-wise optimized features and decision probabilities
-
Anand A, Pugalenthi G, Suganthan PN: Predicting protein structural class by svm with class-wise optimized features and decision probabilities. Journal of Theoretical Biology 2008, 253(2):375-380.
-
(2008)
Journal of Theoretical Biology
, vol.253
, Issue.2
, pp. 375-380
-
-
Anand, A.1
Pugalenthi, G.2
Suganthan, P.N.3
-
15
-
-
50949094134
-
Prediction of protein structure class by coupling improved genetic algorithm and support vector machine
-
Li ZC, Zhou XB, Lin YR, Zou XY: Prediction of protein structure class by coupling improved genetic algorithm and support vector machine. Amino Acids 2008, 35(3):581-590.
-
(2008)
Amino Acids
, vol.35
, Issue.3
, pp. 581-590
-
-
Li, Z.C.1
Zhou, X.B.2
Lin, Y.R.3
Zou, X.Y.4
-
16
-
-
77957124553
-
Prediction of protein structural class for lowsimilarity sequences using support vector machine and psi-blast profile
-
Liu T, Zheng X, Wang J: Prediction of protein structural class for lowsimilarity sequences using support vector machine and psi-blast profile. Biochimie 2010, 92(10):1330-1334.
-
(2010)
Biochimie
, vol.92
, Issue.10
, pp. 1330-1334
-
-
Liu, T.1
Zheng, X.2
Wang, J.3
-
18
-
-
0033809190
-
Prediction of protein structural classes by neural network
-
Cai YD, Zhou GP: Prediction of protein structural classes by neural network. Biochimie 2000, 82(8):783-785.
-
(2000)
Biochimie
, vol.82
, Issue.8
, pp. 783-785
-
-
Cai, Y.D.1
Zhou, G.P.2
-
19
-
-
34247622820
-
Novel twostage hybrid neural discriminant model for predicting proteins structural classes
-
Jahandideh S, Abdolmaleki P, Jahandideh M, Asadabadi EB: Novel twostage hybrid neural discriminant model for predicting proteins structural classes. Biophysical Chemistry 2007, 128(1):87-93.
-
(2007)
Biophysical Chemistry
, vol.128
, Issue.1
, pp. 87-93
-
-
Jahandideh, S.1
Abdolmaleki, P.2
Jahandideh, M.3
Asadabadi, E.B.4
-
20
-
-
33751276215
-
Novel hybrid method for the evaluation of parameters contributing in determination of protein structural classes
-
Jahandideh S, Abdolmaleki P, Jahandideh M, Hayatshahi SHS: Novel hybrid method for the evaluation of parameters contributing in determination of protein structural classes. Journal of Theoretical Biology 2007, 244(2):275-281.
-
(2007)
Journal of Theoretical Biology
, vol.244
, Issue.2
, pp. 275-281
-
-
Jahandideh, S.1
Abdolmaleki, P.2
Jahandideh, M.3
Hayatshahi, S.H.S.4
-
21
-
-
46449128812
-
Prediction of protein structural class using novel evolutionary collocation-based sequence representation
-
Chen K, Kurgan LA, Ruan J: Prediction of protein structural class using novel evolutionary collocation-based sequence representation. Journal of Computational Chemistry 2008, 29(10):1596-1604.
-
(2008)
Journal of Computational Chemistry
, vol.29
, Issue.10
, pp. 1596-1604
-
-
Chen, K.1
Kurgan, L.A.2
Ruan, J.3
-
24
-
-
76649141763
-
Prediction of protein structural classes for lowhomology sequences based on predicted secondary structure
-
Yang JY, Peng ZL, Chen X: Prediction of protein structural classes for lowhomology sequences based on predicted secondary structure. BMC Bioinformatics 2010, 11(Suppl 1):9.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 9
-
-
Yang, J.Y.1
Peng, Z.L.2
Chen, X.3
-
26
-
-
84862763274
-
Accurate prediction of protein structural class using auto covariance transformation of psi-blast profiles
-
Liu T, Geng X, Zheng X, Li R, Wang J: Accurate prediction of protein structural class using auto covariance transformation of psi-blast profiles. Amino Acids 2012, 42:2243-2249.
-
(2012)
Amino Acids
, vol.42
, pp. 2243-2249
-
-
Liu, T.1
Geng, X.2
Zheng, X.3
Li, R.4
Wang, J.5
-
27
-
-
75149123557
-
Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences
-
Mizianty M, Kurgan LA: Modular prediction of protein structural classes from sequences of twilight-zone identity with predicting sequences. BMC Bioinformatics 2009, 10(1):414.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 414
-
-
Mizianty, M.1
Kurgan, L.A.2
-
28
-
-
2942601555
-
Support vector machines for predicting protein structural class
-
Cai YD, Liu XJ, Xu XB, Zhou GP: Support vector machines for predicting protein structural class. BMC Bioinformatics 2001, 2(1):3.
-
(2001)
BMC Bioinformatics
, vol.2
, Issue.1
, pp. 3
-
-
Cai, Y.D.1
Liu, X.J.2
Xu, X.B.3
Zhou, G.P.4
-
29
-
-
41149143721
-
Exploring an alignment free approach for protein classification and structural class prediction
-
Deschavanne P, Tuffery P: Exploring an alignment free approach for protein classification and structural class prediction. Biochimie 2008, 90(4):615-625.
-
(2008)
Biochimie
, vol.90
, Issue.4
, pp. 615-625
-
-
Deschavanne, P.1
Tuffery, P.2
-
30
-
-
54749084166
-
An intriguing controversy over protein structural class prediction
-
Zhou GP: An intriguing controversy over protein structural class prediction. Journal of Protein Chemistry 1998, 17:729-738.
-
(1998)
Journal of Protein Chemistry
, vol.17
, pp. 729-738
-
-
Zhou, G.P.1
-
31
-
-
0034285487
-
Prediction of protein structural classes and subcellular locations
-
Chou KC: Prediction of protein structural classes and subcellular locations. Current Protein and Peptide Science 2000, 1:171-208.
-
(2000)
Current Protein and Peptide Science
, vol.1
, pp. 171-208
-
-
Chou, K.C.1
-
32
-
-
34548697717
-
Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network
-
Ding YS, Zhang TL, Chou KC: Prediction of protein structure classes with pseudo amino acid composition and fuzzy support vector machine network. Protein and Peptide Letters 2007, 14(8):811-815.
-
(2007)
Protein and Peptide Letters
, vol.14
, Issue.8
, pp. 811-815
-
-
Ding, Y.S.1
Zhang, T.L.2
Chou, K.C.3
-
34
-
-
32644441676
-
Prediction of protein structural class with rough sets
-
Cao YF, Liu S, Zhang L, Qin J, Wang J, Tang K: Prediction of protein structural class with rough sets. BMC Bioinformatics 2006, 7(1):20.
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.1
, pp. 20
-
-
Cao, Y.F.1
Liu, S.2
Zhang, L.3
Qin, J.4
Wang, J.5
Tang, K.6
-
35
-
-
84880382490
-
A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition
-
Sharma A, Paliwal KK, Dehzangi A, Lyons J, Imoto S, Miyano S: A strategy to select suitable physicochemical attributes of amino acids for protein fold recognition. BMC Bioinformatics 2013, 14(233):11.
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.233
, pp. 11
-
-
Sharma, A.1
Paliwal, K.K.2
Dehzangi, A.3
Lyons, J.4
Imoto, S.5
Miyano, S.6
-
36
-
-
79952159969
-
Fold prediction problem: The application of new physical and physicochemical-based features
-
Dehzangi A, Phon-Amnuaisuk S: Fold prediction problem: The application of new physical and physicochemical-based features. Protein and Peptide Letters 2011, 18(2):174-185.
-
(2011)
Protein and Peptide Letters
, vol.18
, Issue.2
, pp. 174-185
-
-
Dehzangi, A.1
Phon-Amnuaisuk, S.2
-
37
-
-
50949119233
-
Secondary structure-based assignment of the protein structural classes
-
Kurgan LA, Zhang T, Zhang H, Shen S, Ruan J: Secondary structure-based assignment of the protein structural classes. Amino Acids 2008, 35:551-564.
-
(2008)
Amino Acids
, vol.35
, pp. 551-564
-
-
Kurgan, L.A.1
Zhang, T.2
Zhang, H.3
Shen, S.4
Ruan, J.5
-
38
-
-
62549159517
-
Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation
-
Yang JY, Peng ZL, Yu ZG, Zhang RJ, Anh V, Wang D: Prediction of protein structural classes by recurrence quantification analysis based on chaos game representation. Journal of Theoretical Biology 2009, 257(4):618-626.
-
(2009)
Journal of Theoretical Biology
, vol.257
, Issue.4
, pp. 618-626
-
-
Yang, J.Y.1
Peng, Z.L.2
Yu, Z.G.3
Zhang, R.J.4
Anh, V.5
Wang, D.6
-
39
-
-
84880749133
-
Enhancing protein fold prediction accuracy using evolutionary and structural features
-
PRIB
-
Dehzangi A, Paliwal KK, Lyons J, Sharma A, Sattar A: Enhancing protein fold prediction accuracy using evolutionary and structural features. Proceeding of the Eighth IAPR International Conference on Pattern Recognition in Bioinformatics. PRIB 2013, 196-207.
-
(2013)
Proceeding of the Eighth IAPR International Conference on Pattern Recognition in Bioinformatics
, pp. 196-207
-
-
Dehzangi, A.1
Paliwal, K.K.2
Lyons, J.3
Sharma, A.4
Sattar, A.5
-
40
-
-
84880723300
-
Exploring potential discriminatory information embedded in pssm to enhance protein structural class prediction accuracy
-
PRIB
-
Dehzangi A, Paliwal KK, Lyons J, Sharma A, Sattar A: Exploring potential discriminatory information embedded in pssm to enhance protein structural class prediction accuracy. Proceeding of the Eighth IAPR International Conference on Pattern Recognition in Bioinformatics. PRIB 2013, 208-219.
-
(2013)
Proceeding of the Eighth IAPR International Conference on Pattern Recognition in Bioinformatics
, pp. 208-219
-
-
Dehzangi, A.1
Paliwal, K.K.2
Lyons, J.3
Sharma, A.4
Sattar, A.5
-
41
-
-
0030801002
-
Gapped blast and psi-blast: a new generation of protein database search programs
-
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ: Gapped blast and psi-blast: a new generation of protein database search programs. Nucleic Acids Research 1997, 17:3389-3402.
-
(1997)
Nucleic Acids Research
, vol.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.H.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
42
-
-
0033578684
-
Protein secondary structure prediction based on positionspecific scoring matrices
-
Jones DT: Protein secondary structure prediction based on positionspecific scoring matrices. Journal of Molecular Biology 1999, 292(2):195-202.
-
(1999)
Journal of Molecular Biology
, vol.292
, Issue.2
, pp. 195-202
-
-
Jones, D.T.1
-
43
-
-
69949110263
-
Prediction of protein folding rates from primary sequence by fusing multiple sequential features
-
Shen HB, Song JN, Chou KC: Prediction of protein folding rates from primary sequence by fusing multiple sequential features. Biomedical Science and Engineering 2009, 2:136-143.
-
(2009)
Biomedical Science and Engineering
, vol.2
, pp. 136-143
-
-
Shen, H.B.1
Song, J.N.2
Chou, K.C.3
-
44
-
-
83855162773
-
Spine x: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles
-
Faraggi E, Zhang T, Yang Y, Kurgan L, Zhou Y: Spine x: Improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles. Journal of Computational Chemistry 2012, 33(3):259-267.
-
(2012)
Journal of Computational Chemistry
, vol.33
, Issue.3
, pp. 259-267
-
-
Faraggi, E.1
Zhang, T.2
Yang, Y.3
Kurgan, L.4
Zhou, Y.5
-
45
-
-
33748415440
-
Prediction of structural classes for protein sequences and domains-impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy
-
Kurgan LA, Homaeian L: Prediction of structural classes for protein sequences and domains-impact of prediction algorithms, sequence representation and homology, and test procedures on accuracy. Pattern Recognition 2006, 39:2323-2343.
-
(2006)
Pattern Recognition
, vol.39
, pp. 2323-2343
-
-
Kurgan, L.A.1
Homaeian, L.2
-
46
-
-
0033954256
-
The protein data bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE: The protein data bank. Nucleic Acids Research 2000, 28(1):235-242.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.1
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
47
-
-
0028961335
-
Scop: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C: Scop: A structural classification of proteins database for the investigation of sequences and structures. Journal of Molecular Biology 1995, 247(4):536-540.
-
(1995)
Journal of Molecular Biology
, vol.247
, Issue.4
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
48
-
-
77956623830
-
A high-accuracy protein structural class prediction algorithm using predicted secondary structural information
-
Liu T, Jia C: A high-accuracy protein structural class prediction algorithm using predicted secondary structural information. Journal of Theoretical Biology 2010, 267(3):272-275.
-
(2010)
Journal of Theoretical Biology
, vol.267
, Issue.3
, pp. 272-275
-
-
Liu, T.1
Jia, C.2
-
49
-
-
84871963701
-
A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition
-
Sharma A, Lyons J, Dehzangi A, Paliwal KK: A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition. Journal of Theoretical Biology 2013, 320(0):41-46.
-
(2013)
Journal of Theoretical Biology
, vol.320
, pp. 41-46
-
-
Sharma, A.1
Lyons, J.2
Dehzangi, A.3
Paliwal, K.K.4
-
50
-
-
26844545834
-
Progress in protein structural class prediction and its impact to bioinformatics and proteomics
-
Chou KC: Progress in protein structural class prediction and its impact to bioinformatics and proteomics. Current Protein and Peptide Science 2005, 6:423-436.
-
(2005)
Current Protein and Peptide Science
, vol.6
, pp. 423-436
-
-
Chou, K.C.1
-
53
-
-
58849136179
-
Prediction of the protein structural class by specific peptide frequencies
-
Costantini S, Facchiano AM: Prediction of the protein structural class by specific peptide frequencies. Biochimie 2009, 91(2):226-229.
-
(2009)
Biochimie
, vol.91
, Issue.2
, pp. 226-229
-
-
Costantini, S.1
Facchiano, A.M.2
-
54
-
-
84865383117
-
Using principal component analysis and support vector machine to predict protein structural class for low-similarity sequences via pssm
-
Zhang S, Ye F, Yuan X: Using principal component analysis and support vector machine to predict protein structural class for low-similarity sequences via pssm. Journal of Biomolecular Structure and Dynamics 2012, 29(6):1138-1146.
-
(2012)
Journal of Biomolecular Structure and Dynamics
, vol.29
, Issue.6
, pp. 1138-1146
-
-
Zhang, S.1
Ye, F.2
Yuan, X.3
-
55
-
-
44349134514
-
Scpred: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences
-
Kurgan LA, Cios KJ, Chen K: Scpred: Accurate prediction of protein structural class for sequences of twilight-zone similarity with predicting sequences. BMC Bioinformatics 2008, 9:226.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 226
-
-
Kurgan, L.A.1
Cios, K.J.2
Chen, K.3
-
56
-
-
36348994911
-
Prediction protein structural classes with pseudo amino acid composition: approximate entropy and hydrophobicity pattern
-
Zhang TL, Ding YS, Chou KC: Prediction protein structural classes with pseudo amino acid composition: approximate entropy and hydrophobicity pattern. Theoretical Biology 2008, 250:186-193.
-
(2008)
Theoretical Biology
, vol.250
, pp. 186-193
-
-
Zhang, T.L.1
Ding, Y.S.2
Chou, K.C.3
-
57
-
-
66449105264
-
Using support vector machines for prediction of protein structural classes based on discrete wavelet transform
-
Qiu JD, Luo SH, Huang JH, Liang RP: Using support vector machines for prediction of protein structural classes based on discrete wavelet transform. Journal of Computational Chemistry 2009, 30(8):1344-1350.
-
(2009)
Journal of Computational Chemistry
, vol.30
, Issue.8
, pp. 1344-1350
-
-
Qiu, J.D.1
Luo, S.H.2
Huang, J.H.3
Liang, R.P.4
-
58
-
-
33748287103
-
Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network
-
Chen C, Zhou X, Tian Y, Zou X, Cai P: Predicting protein structural class with pseudo-amino acid composition and support vector machine fusion network. Analytical Biochemistry 2006, 357(1):116-121.
-
(2006)
Analytical Biochemistry
, vol.357
, Issue.1
, pp. 116-121
-
-
Chen, C.1
Zhou, X.2
Tian, Y.3
Zou, X.4
Cai, P.5
|