MRC2014: Extensions to the MRC format header for electron cryo-microscopy and tomography

Journal of Structural Biology

Volumn 192, Issue 2, 2015, Pages 146-150

  Cheng, Anchi ^a   Henderson, Richard ^b   Mastronarde, David ^c   Ludtke, Steven J ^d   Schoenmakers, Remco H M ^e   Short, Judith ^b   Marabini, Roberto ^f   Dallakyan, Sargis ^a   Agard, David ^g   Winn, Martyn ^h  

^a NEW YORK STRUCTURAL BIOLOGY CENTER   (United States)

^b MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

^c UNIVERSITY OF COLORADO   (United States)

^d BAYLOR COLLEGE OF MEDICINE   (United States)

^e Thermo Fisher Scientific   (United States)

^f UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^g HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^h DARESBURY LABORATORY   (United Kingdom)

Author keywords

Electron microscopy; File format; Image data; Macromolecular crystallography

Indexed keywords

ARTICLE; CRYOELECTRON MICROSCOPY; CRYSTALLOGRAPHY; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; IMAGE PROCESSING; IMAGING SOFTWARE; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING; TOMOGRAPHY; ELECTRON TOMOGRAPHY; INFORMATION RETRIEVAL; PROCEDURES; SOFTWARE;

CRYOELECTRON MICROSCOPY; ELECTRON MICROSCOPE TOMOGRAPHY; IMAGING, THREE-DIMENSIONAL; INFORMATION STORAGE AND RETRIEVAL; SOFTWARE;

EID: 84945967810     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2015.04.002     Document Type: Article

References (12)

1. Chen H., Hughes D.D., Chan T.-A., Sedat J.W., Agard D.A. IVE (image visualization environment): a software platform for all three-dimensional microscopy applications. J. Struct. Biol. 1996, 116:56-60.
2. Crowther R.A., Henderson R., Smith J.M. MRC image processing programs. J. Struct. Biol. 1996, 116:9-16.
3. de la Rosa-Trevin J.M., Oton J., Marabini R., Zaldivar A., Vargas J., Carazo J.M., Sorzano C. Xmipp 3.0: an improved software suite for image processing in electron microscopy. J. Struct. Biol. 2013, 184:321-328.
4. Kremer J.R., Mastronarde D.N., McIntosh J.R. Computer visualization of three-dimensional image data using IMOD. J. Struct. Biol. 1996, 116:71-76.
5. Lander G.C., Stagg S.M., Voss N.R., Cheng A., Fellmann D., Pulokas J., Yoshioka C., Irving C., Mulder A., Lau P.W., Lyumkis D., Potter C.S., Carragher B. Appion: an integrated, database-driven pipeline to facilitate EM image processing. J. Struct. Biol. 2009, 166:95-102.
6. Lawson C.L., Baker M.L., Best C., Bi C., Dougherty M., Feng P., van Ginkel G., Devkota B., Lagerstedt I., Ludtke S.J., Newman R.H., Oldfield T.J., Rees I., Sahni G., Sala R., Velankar S., Warren J., Westbrook J.D., Henrick K., Kleywegt G.J., Berman H.M., Chiu W. EMDataBank.org: unified data resource for Cryo-EM. Nucleic Acids Res. 2011, 39:D456-464.
7. Mastronarde D.N. Automated electron microscope tomography using robust prediction of specimen movements. J. Struct. Biol. 2005, 152:36-51.
8. Pettersen E.F., Goddard T.D., Huang C.C., Couch G.S., Greenblatt D.M., Meng E.C., Ferrin T.E. USCF Chimera - a visualization system for exploratory research and analysis. J. Comput. Chem. 2004, 25:1605-1612.
9. Tang G., Peng L., Baldwin P.R., Mann D.S., Jiang W., Rees I., Ludtke S.J. EMAN2: an extensible image processing suite for electron microscopy. J. Struct. Biol. 2007, 157:38-46.
10. Winn M.D., Ballard C.C., Cowtan K.D., Dodson E.J., Emsley P., Evans P.R., Keegan R.M., Krissinel E.B., Leslie A.G.W., McCoy A., McNicholas S.J., Murshudov G.N., Pannu N.S., Potterton E.A., Powell H.R., Read R.J., Vagin A., Wilson K.S. Overview of the CCP4 suite and current developments. Acta Crystallogr. D 2011, 67:235-242.
11. Wood C., Burnley T., Patwardhan A., Scheres S., Topf M., Roseman A., Winn M.D. Collaborative computational project for electron cryo-microscopy. Acta Crystallogr. D 2007, 71:123-126.
12. Zheng S.Q., Keszthelyi B., Branlund E., Lyle J.M., Braunfeld M.B., Sedat J.W., Agard D.A. UCSF tomography: an integrated software suite for real-time electron microscopic tomographic data collection, alignment, and reconstruction. J. Struct. Biol. 2007, 157:138-147.