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Volumn 16, Issue , 2015, Pages

IRcall and IRclassifier: Two methods for flexible detection of intron retention events from RNA-Seq data

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; ARTICLE; CLASSIFICATION ALGORITHM; CLINICAL EFFECTIVENESS; CONTROLLED STUDY; INTRON RETENTION; INTRON RETENTION CALL; INTRON RETENTION CLASSIFIER; MATHEMATICAL ANALYSIS; MEASUREMENT ACCURACY; NEXT GENERATION SEQUENCING; NONHUMAN; RNA SEQUENCE; RNA SPLICING; WILD TYPE; ALGORITHM; ALTERNATIVE RNA SPLICING; ARABIDOPSIS; BIOLOGY; COMPUTER PROGRAM; GENE EXPRESSION; GENETICS; INTERNET; INTRON; PROCEDURES; REPRODUCIBILITY; SEQUENCE ANALYSIS; STATISTICS AND NUMERICAL DATA;

EID: 84945937563     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-16-S2-S9     Document Type: Article
Times cited : (13)

References (22)
  • 1
    • 0035252410 scopus 로고    scopus 로고
    • Alternative splicing: increasing diversity in the proteomic world
    • Graveley BR. Alternative splicing: increasing diversity in the proteomic world. Trends in Genetics 2001, 17:100-107
    • (2001) Trends in Genetics , vol.17 , pp. 100-107
    • Graveley, B.R.1
  • 2
    • 56749098074 scopus 로고    scopus 로고
    • Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing
    • Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nature Genetics 2008, 40:1413-1415
    • (2008) Nature Genetics , vol.40 , pp. 1413-1415
    • Pan, Q.1    Shai, O.2    Lee, L.J.3    Frey, B.J.4    Blencowe, B.J.5
  • 3
    • 75849145292 scopus 로고    scopus 로고
    • Expansion of the eukaryotic proteome by alternative splicing
    • Nilsen TW, Graveley BR. Expansion of the eukaryotic proteome by alternative splicing. Nature 2010, 463:457-463
    • (2010) Nature , vol.463 , pp. 457-463
    • Nilsen, T.W.1    Graveley, B.R.2
  • 5
    • 33750084381 scopus 로고    scopus 로고
    • Whole-genome microarray in arabidopsis facilitates global analysis of retained introns
    • Ner-Gaon H, Fluhr R. Whole-genome microarray in arabidopsis facilitates global analysis of retained introns. DNA Research 2006, 13:111-121
    • (2006) DNA Research , vol.13 , pp. 111-121
    • Ner-Gaon, H.1    Fluhr, R.2
  • 6
  • 7
    • 78751570979 scopus 로고    scopus 로고
    • Rna sequencing: advances, challenges and opportunities
    • Ozsolak F, Milos PM. Rna sequencing: advances, challenges and opportunities. Nature Reviews Genetics 2011, 12:87-98
    • (2011) Nature Reviews Genetics , vol.12 , pp. 87-98
    • Ozsolak, F.1    Milos, P.M.2
  • 8
    • 79960656161 scopus 로고    scopus 로고
    • Expressionplot: a web-based framework for analysis of rna-seq and microarray gene expression data
    • Friedman BA, Maniatis T. Expressionplot: a web-based framework for analysis of rna-seq and microarray gene expression data. Genome Biology 2011, 12:R69
    • (2011) Genome Biology , vol.12 , pp. R69
    • Friedman, B.A.1    Maniatis, T.2
  • 12
    • 0036226603 scopus 로고    scopus 로고
    • Blatthe blast-like alignment tool
    • Kent WJ. Blatthe blast-like alignment tool. Genome Research 2002, 12:656-664
    • (2002) Genome Research , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 14
    • 0030681260 scopus 로고    scopus 로고
    • The significance of digital gene expression profiles
    • Audic S, Claverie J-M. The significance of digital gene expression profiles. Genome Research 1997, 7:986-995.
    • (1997) Genome Research , vol.7 , pp. 986-995
    • Audic, S.1    Claverie, J.-M.2
  • 15
    • 84876996918 scopus 로고    scopus 로고
    • Tophat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
    • Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. Tophat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biology 2013, 14:R36
    • (2013) Genome Biology , vol.14 , pp. R36
    • Kim, D.1    Pertea, G.2    Trapnell, C.3    Pimentel, H.4    Kelley, R.5    Salzberg, S.L.6
  • 18
    • 0003957032 scopus 로고    scopus 로고
    • Data Mining: Practical Machine Learning Tools and Techniques
    • Morgan Kaufmann Publishers Inc., San Francisco, CA, USA
    • Witten IH, Frank E. Data Mining: Practical Machine Learning Tools and Techniques. 2005, Morgan Kaufmann Publishers Inc., San Francisco, CA, USA.
    • (2005)
    • Witten, I.H.1    Frank, E.2
  • 19
    • 0003500248 scopus 로고
    • C4.5: Programs for Machine Learning
    • Morgan Kaufmann Publishers Inc., San Francisco, CA, USA
    • Quinlan JR. C4.5: Programs for Machine Learning. 1993, Morgan Kaufmann Publishers Inc., San Francisco, CA, USA.
    • (1993)
    • Quinlan, J.R.1
  • 20
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. Random forests. Machine learning 2001, 45(1):5-32.
    • (2001) Machine learning , vol.45 , Issue.1 , pp. 5-32
    • Breiman, L.1
  • 21
    • 84875634162 scopus 로고    scopus 로고
    • Integrative genomics viewer (igv): high-performance genomics data visualization and exploration
    • Thorvaldsdttir H, Robinson JT, Mesirov JP. Integrative genomics viewer (igv): high-performance genomics data visualization and exploration. Briefings in Bioinformatics 2012, 14:178-192.
    • (2012) Briefings in Bioinformatics , vol.14 , pp. 178-192
    • Thorvaldsdttir, H.1    Robinson, J.T.2    Mesirov, J.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.