-
1
-
-
0034917315
-
Endogenous retroviruses in the human genome sequence
-
reviews1017-reviews1017.5
-
Griffiths D: Endogenous retroviruses in the human genome sequence. Genome Biology 2001, 2(6):reviews1017-reviews1017.5
-
(2001)
Genome Biology
, vol.2
, Issue.6
-
-
Griffiths, D.1
-
2
-
-
84867050577
-
Transposable elements: An abundant and natural source of regulatory sequences for host genes
-
Rebollo R, Romanish MT, Mager DL. Transposable elements: An abundant and natural source of regulatory sequences for host genes. Annu Rev Genet. 2012;46:21-42.
-
(2012)
Annu Rev Genet.
, vol.46
, pp. 21-42
-
-
Rebollo, R.1
Romanish, M.T.2
Mager, D.L.3
-
4
-
-
38049097957
-
Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins
-
Mangeney M, Renard M, Schlecht-Louf G, Bouallaga I, Heidmann O, Letzelter C, et al. Placental syncytins: Genetic disjunction between the fusogenic and immunosuppressive activity of retroviral envelope proteins. Proc Natl Acad Sci U S A. 2007;104(51):20534-9.
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.51
, pp. 20534-20539
-
-
Mangeney, M.1
Renard, M.2
Schlecht-Louf, G.3
Bouallaga, I.4
Heidmann, O.5
Letzelter, C.6
-
5
-
-
0342545919
-
Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
-
Mi S, Lee X, Li X, Veldman GM, Finnerty H, Racie L, et al. Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature. 2000;403(6771):785-9.
-
(2000)
Nature
, vol.403
, Issue.6771
, pp. 785-789
-
-
Mi, S.1
Lee, X.2
Li, X.3
Veldman, G.M.4
Finnerty, H.5
Racie, L.6
-
6
-
-
0842308211
-
HERV-W-related RNA detected in plasma from individuals with recent-onset schizophrenia or schizoaffective disorder
-
Karlsson H, Schröder J, Bachmann S, Bottmer C, Yolken RH. HERV-W-related RNA detected in plasma from individuals with recent-onset schizophrenia or schizoaffective disorder. Mol Psychiatry. 2004;9(1):12-3.
-
(2004)
Mol Psychiatry
, vol.9
, Issue.1
, pp. 12-13
-
-
Karlsson, H.1
Schröder, J.2
Bachmann, S.3
Bottmer, C.4
Yolken, R.H.5
-
7
-
-
0034796287
-
Endogenous retroviruses and multiple sclerosis
-
Kolson DL, Gonzalez-Scarano F. Endogenous retroviruses and multiple sclerosis. Ann Neurol. 2001;50(4):429-30.
-
(2001)
Ann Neurol.
, vol.50
, Issue.4
, pp. 429-430
-
-
Kolson, D.L.1
Gonzalez-Scarano, F.2
-
8
-
-
33746152795
-
Expression of the human endogenous retrovirus-K transmembrane envelope, rec and Np9 proteins in melanomas and melanoma cell lines
-
Buscher K, Hahn S, Hofmann M, Trefzer U, Ozel M, Sterry W, et al. Expression of the human endogenous retrovirus-K transmembrane envelope, Rec and Np9 proteins in melanomas and melanoma cell lines. Melanoma Res. 2006;16(3):223-34.
-
(2006)
Melanoma Res.
, vol.16
, Issue.3
, pp. 223-234
-
-
Buscher, K.1
Hahn, S.2
Hofmann, M.3
Trefzer, U.4
Ozel, M.5
Sterry, W.6
-
9
-
-
38849133558
-
Variable transcriptional activity of endogenous retroviruses in human breast cancer
-
Frank O, Verbeke C, Schwarz N, Mayer J, Fabarius A, Hehlmann R, et al. Variable transcriptional activity of endogenous retroviruses in human breast cancer. J Virol. 2008;82(4):1808-18.
-
(2008)
J Virol.
, vol.82
, Issue.4
, pp. 1808-1818
-
-
Frank, O.1
Verbeke, C.2
Schwarz, N.3
Mayer, J.4
Fabarius, A.5
Hehlmann, R.6
-
10
-
-
0242348844
-
Assessment of retroviral activity using a universal retrovirus chip
-
Seifarth W, Spiess B, Zeilfelder U, Speth C, Hehlmann R, Leib-Mösch C. Assessment of retroviral activity using a universal retrovirus chip. J Virol Methods. 2003;112(1-2):79-91.
-
(2003)
J Virol Methods
, vol.112
, Issue.1-2
, pp. 79-91
-
-
Seifarth, W.1
Spiess, B.2
Zeilfelder, U.3
Speth, C.4
Hehlmann, R.5
Leib-Mösch, C.6
-
11
-
-
10644240714
-
Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray
-
Seifarth W, Frank O, Zeilfelder U, Spiess B, Greenwood AD, Hehlmann R, et al. Comprehensive Analysis of Human Endogenous Retrovirus Transcriptional Activity in Human Tissues with a Retrovirus-Specific Microarray. J Virol. 2005;79(1):341-52.
-
(2005)
J Virol.
, vol.79
, Issue.1
, pp. 341-352
-
-
Seifarth, W.1
Frank, O.2
Zeilfelder, U.3
Spiess, B.4
Greenwood, A.D.5
Hehlmann, R.6
-
12
-
-
57749195712
-
RNA-seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet. 2009;10(1):57-63.
-
(2009)
Nat Rev Genet.
, vol.10
, Issue.1
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
13
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA elements) project
-
The ENCODE Project Consortium. The ENCODE (ENCyclopedia Of DNA Elements) Project. Science. 2004;306(5696):636-40.
-
(2004)
Science
, vol.306
, Issue.5696
, pp. 636-640
-
-
-
14
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, et al. Landscape of transcription in human cells. Nature. 2012;489(7414):101-8.
-
(2012)
Nature
, vol.489
, Issue.7414
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
-
15
-
-
84887331330
-
Finding the active genes in deep RNA-seq gene expression studies
-
Hart T, Komori H, LaMere S, Podshivalova K, Salomon D. Finding the active genes in deep RNA-seq gene expression studies. BMC Genomics. 2013;14(1):778.
-
(2013)
BMC Genomics
, vol.14
, Issue.1
, pp. 778
-
-
Hart, T.1
Komori, H.2
LaMere, S.3
Podshivalova, K.4
Salomon, D.5
-
16
-
-
84865858631
-
RNA editing in the human ENCODE RNA-seq data
-
Park E, Williams B, Wold BJ, Mortazavi A. RNA editing in the human ENCODE RNA-seq data. Genome Res. 2012;22(9):1626-33.
-
(2012)
Genome Res.
, vol.22
, Issue.9
, pp. 1626-1633
-
-
Park, E.1
Williams, B.2
Wold, B.J.3
Mortazavi, A.4
-
17
-
-
84865839598
-
Long noncoding RNAs are rarely translated in two human cell lines
-
Bánfai B, Jia H, Khatun J, Wood E, Risk B, Gundling WE, et al. Long noncoding RNAs are rarely translated in two human cell lines. Genome Res. 2012;22(9):1646-57.
-
(2012)
Genome Res.
, vol.22
, Issue.9
, pp. 1646-1657
-
-
Bánfai, B.1
Jia, H.2
Khatun, J.3
Wood, E.4
Risk, B.5
Gundling, W.E.6
-
18
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE project
-
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, et al. GENCODE: The reference human genome annotation for The ENCODE Project. Genome Res. 2012;22(9):1760-74.
-
(2012)
Genome Res.
, vol.22
, Issue.9
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.M.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
-
19
-
-
84904086862
-
Transcriptional landscape of repetitive elements in normal and cancer human cells
-
Criscione S, Zhang Y, Thompson W, Sedivy J, Neretti N. Transcriptional landscape of repetitive elements in normal and cancer human cells. BMC Genomics. 2014;15(1):583.
-
(2014)
BMC Genomics
, vol.15
, Issue.1
, pp. 583
-
-
Criscione, S.1
Zhang, Y.2
Thompson, W.3
Sedivy, J.4
Neretti, N.5
-
20
-
-
84898010302
-
The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity
-
Lu X, Sachs F, Ramsay L, Jacques PE, Göke J, Bourque G, et al. The retrovirus HERVH is a long noncoding RNA required for human embryonic stem cell identity. Nat Struct Mol Biol. 2014;21:423-5.
-
(2014)
Nat Struct Mol Biol.
, vol.21
, pp. 423-425
-
-
Lu, X.1
Sachs, F.2
Ramsay, L.3
Jacques, P.E.4
Göke, J.5
Bourque, G.6
-
21
-
-
0036088127
-
HERVd: Database of human endogenous retroviruses
-
Pačes J, Pavlíček A, Pačes V. HERVd: database of human endogenous retroviruses. Nucleic Acids Res. 2002;30(1):205-6.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 205-206
-
-
Pačes, J.1
Pavlíček, A.2
Pačes, V.3
-
22
-
-
18544401333
-
HERVd: The human endogenous RetroViruses database: Update
-
Pačes J, Pavlíček A, Zika R, Kapitonov VV, Jurka J, Pačes V. HERVd: the Human Endogenous RetroViruses Database: update. Nucleic Acids Res. 2004;32 suppl 1:D50.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. D50
-
-
Pačes, J.1
Pavlíček, A.2
Zika, R.3
Kapitonov, V.V.4
Jurka, J.5
Pačes, V.6
-
23
-
-
84874287845
-
Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-seq technique
-
Gao Y, Xu H, Shen Y, Wang J. Transcriptomic analysis of rice (Oryza sativa) endosperm using the RNA-Seq technique. Plant Mol Biol. 2013;81(4-5):363-78.
-
(2013)
Plant Mol Biol.
, vol.81
, Issue.4-5
, pp. 363-378
-
-
Gao, Y.1
Xu, H.2
Shen, Y.3
Wang, J.4
-
24
-
-
84906935851
-
Exploring differentially expressed genes in the ovaries of uniparous and multiparous goats using the RNA-seq (Quantification) method
-
Ling YH, Xiang H, Li YS, Liu Y, Zhang YH, Zhang ZJ, et al. Exploring differentially expressed genes in the ovaries of uniparous and multiparous goats using the RNA-Seq (Quantification) method. Gene. 2014;550(1):148-53.
-
(2014)
Gene.
, vol.550
, Issue.1
, pp. 148-153
-
-
Ling, Y.H.1
Xiang, H.2
Li, Y.S.3
Liu, Y.4
Zhang, Y.H.5
Zhang, Z.J.6
-
25
-
-
0029129017
-
Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence
-
Cordonnier A, Casella JF, Heidmann T. Isolation of novel human endogenous retrovirus-like elements with foamy virus-related pol sequence. J Virol. 1995;69(9):5890-7.
-
(1995)
J Virol.
, vol.69
, Issue.9
, pp. 5890-5897
-
-
Cordonnier, A.1
Casella, J.F.2
Heidmann, T.3
-
26
-
-
10144221975
-
HERV-K: The biologically most active human endogenous retrovirus family
-
Tönjes RR, Löwer R, Boller K, Denner J, Hasenmaier B, Kirsch H, et al. HERV-K: the biologically most active human endogenous retrovirus family. J Acquir Immune Defic Syndr Hum Retrovirol. 1996;13 Suppl 1:S261-7.
-
(1996)
J Acquir Immune Defic Syndr Hum Retrovirol.
, vol.13
, pp. S261-S267
-
-
Tönjes, R.R.1
Löwer, R.2
Boller, K.3
Denner, J.4
Hasenmaier, B.5
Kirsch, H.6
-
27
-
-
33644874573
-
The UCSC genome browser database: Update 2006
-
Database issue
-
Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, et al. The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 2006;34(Database issue):D590-8.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. D590-D598
-
-
Hinrichs, A.S.1
Karolchik, D.2
Baertsch, R.3
Barber, G.P.4
Bejerano, G.5
Clawson, H.6
-
28
-
-
0036079158
-
The human genome browser at UCSC
-
Kent W, Sugnet C, Furey T, Roskin K, Pringle T, Zahler A, et al. The human genome browser at UCSC. Genome Res. 2002;12(6):996-1006.
-
(2002)
Genome Res.
, vol.12
, Issue.6
, pp. 996-1006
-
-
Kent, W.1
Sugnet, C.2
Furey, T.3
Roskin, K.4
Pringle, T.5
Zahler, A.6
-
29
-
-
84871215627
-
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
-
Santoni F, Guerra J, Luban J. HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency. Retrovirology. 2012;9(1):111.
-
(2012)
Retrovirology
, vol.9
, Issue.1
, pp. 111
-
-
Santoni, F.1
Guerra, J.2
Luban, J.3
-
30
-
-
70450170839
-
Human endogenous retroviral long terminal repeat sequences as cell type-specific promoters in retroviral vectors
-
Schön U, Diem O, Leitner L, Gunzburg WH, Mager DL, Salmons B, et al. Human endogenous retroviral long terminal repeat sequences as cell type-specific promoters in retroviral vectors. J Virol. 2009;83(23):12643-50.
-
(2009)
J Virol.
, vol.83
, Issue.23
, pp. 12643-12650
-
-
Schön, U.1
Diem, O.2
Leitner, L.3
Gunzburg, W.H.4
Mager, D.L.5
Salmons, B.6
-
31
-
-
84891814834
-
Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC genome browser
-
Raney BJ, Dreszer TR, Barber GP, Clawson H, Fujita PA, Wang T, et al. Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser. Bioinformatics. 2014;30(7):1003-5.
-
(2014)
Bioinformatics
, vol.30
, Issue.7
, pp. 1003-1005
-
-
Raney, B.J.1
Dreszer, T.R.2
Barber, G.P.3
Clawson, H.4
Fujita, P.A.5
Wang, T.6
-
32
-
-
84875945705
-
ENCODE data in the UCSC genome browser: Year 5 update
-
Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, et al. ENCODE Data in the UCSC Genome Browser: year 5 update. Nucleic Acids Res. 2013;41(D1):D56-63.
-
(2013)
Nucleic Acids Res.
, vol.41
, Issue.D1
, pp. D56-D63
-
-
Rosenbloom, K.R.1
Sloan, C.A.2
Malladi, V.S.3
Dreszer, T.R.4
Learned, K.5
Kirkup, V.M.6
-
33
-
-
0036226603
-
BLAT-The BLAST-like alignment tool
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res. 2002;12(4):656-64.
-
(2002)
Genome Res.
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
34
-
-
84897397058
-
Feature counts: An efficient general purpose program for assigning sequence reads to genomic features
-
Liao Y, Smyth GK, Shi W. feature Counts: an efficient general purpose program for assigning sequence reads to genomic features. Bioinformatics. 2014;30(7):923-30.
-
(2014)
Bioinformatics
, vol.30
, Issue.7
, pp. 923-930
-
-
Liao, Y.1
Smyth, G.K.2
Shi, W.3
-
35
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W. Differential expression analysis for sequence count data. Genome Biol. 2010;11:R106.
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
36
-
-
28744458859
-
Bioconductor: Open software development for computational biology and bioinformatics
-
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, et al. Bioconductor: Open software development for computational biology and bioinformatics. Genome Biol. 2004;5:R80.
-
(2004)
Genome Biol.
, vol.5
, pp. R80
-
-
Gentleman, R.C.1
Carey, V.J.2
Bates, D.M.3
Bolstad, B.4
Dettling, M.5
Dudoit, S.6
-
38
-
-
84988674410
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y. Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing. J R Stat Soc Ser B Methodol. 1995;57(1):289-300.
-
(1995)
J R Stat Soc ser B Methodol.
, vol.57
, Issue.1
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
39
-
-
84884416048
-
Human housekeeping genes, revisited
-
Eisenberg E, Levanon EY. Human housekeeping genes, revisited. Trends Genet. 2013;29(10):569-74.
-
(2013)
Trends Genet.
, vol.29
, Issue.10
, pp. 569-574
-
-
Eisenberg, E.1
Levanon, E.Y.2
|