-
1
-
-
27544483495
-
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
-
Lai, W. R., Johnson, M. D., Kucherlapati, R. And Park, P. J. (2005) Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data. Bioinformatics, 21, 3763-3770.
-
(2005)
Bioinformatics
, vol.21
, pp. 3763-3770
-
-
Lai, W.R.1
Johnson, M.D.2
Kucherlapati, R.3
Park, P.J.4
-
2
-
-
27944455289
-
A comparison study: Applying segmentation to arrayCGH data for downstream analyses
-
Willenbrock, H. And Fridlyand, J. (2005) A comparison study: Applying segmentation to arrayCGH data for downstream analyses. Bioinformatics, 21, 4084-4091.
-
(2005)
Bioinformatics
, vol.21
, pp. 4084-4091
-
-
Willenbrock, H.1
Fridlyand, J.2
-
3
-
-
33746972191
-
Allele-specific amplification in cancer revealed by SNP array analysis
-
LaFramboise, T., Weir, B. A., Zhao, X., Beroukhim, R., Li, C., Harrington, D., Sellers, W. R. And Meyerson, M. (2005) Allele-specific amplification in cancer revealed by SNP array analysiS. PLoS Comput. Biol., 1, e65.
-
(2005)
PLoS Comput. Biol.
, vol.1
, pp. e65
-
-
LaFramboise, T.1
Weir, B.A.2
Zhao, X.3
Beroukhim, R.4
Li, C.5
Harrington, D.6
Sellers, W.R.7
Meyerson, M.8
-
4
-
-
33646911907
-
Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays
-
Beroukhim, R., Lin, M., Park, Y., Hao, K., Zhao, X., Garraway, L. A., Fox, E. A., Hochberg, E. P., Mellinghoff, I. K., Hofer, M. D. et al. (2006) Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrayS. PLoS Comput. Biol., 2, e41.
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. e41
-
-
Beroukhim, R.1
Lin, M.2
Park, Y.3
Hao, K.4
Zhao, X.5
Garraway, L.A.6
Fox, E.A.7
Hochberg, E.P.8
Mellinghoff, I.K.9
Hofer, M.D.10
-
5
-
-
2542548405
-
DChipSNP: Significance curve and clustering of SNP-array-based loss-of-heterozygosity data
-
Lin, M., Wei, L.-J., Sellers, W. R., Lieberfarb, M., Wong, W. H. And Li, C. (2004) dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data. Bioinformatics, 20, 1233-1240.
-
(2004)
Bioinformatics
, vol.20
, pp. 1233-1240
-
-
Lin, M.1
Wei, L.-J.2
Sellers, W.R.3
Lieberfarb, M.4
Wong, W.H.5
Li, C.6
-
6
-
-
35948984173
-
PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
-
Wang, K., Li, M., Hadley, D., Liu, R., Glessner, J., Grant, S. F., Hakonarson, H. And Bucan, M. (2007) PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. Genome Res., 17, 1665-1674.
-
(2007)
Genome Res.
, vol.17
, pp. 1665-1674
-
-
Wang, K.1
Li, M.2
Hadley, D.3
Liu, R.4
Glessner, J.5
Grant, S.F.6
Hakonarson, H.7
Bucan, M.8
-
7
-
-
34247877877
-
QuantiSNP: An objective Bayes hidden Markov model to detect and accurately map copy number variation using SNP genotyping data
-
Colella, S., Yau, C., Taylor, J. M., Mirza, G., Butler, H., Clouston, P., Bassett, A. S., Seller, A., Holmes, C. C. And Ragoussis, J. (2007) QuantiSNP: An objective Bayes hidden Markov model to detect and accurately map copy number variation using SNP genotyping data. Nucleic Acids Res., 35, 2013-2025.
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 2013-2025
-
-
Colella, S.1
Yau, C.2
Taylor, J.M.3
Mirza, G.4
Butler, H.5
Clouston, P.6
Bassett, A.S.7
Seller, A.8
Holmes, C.C.9
Ragoussis, J.10
-
8
-
-
43449135901
-
Major copy proportion analysis of tumor samples using SNP arrays
-
Li, C., Beroukhim, R., Weir, B. A., Winckler, W., Garraway, L. A., Sellers, W. R. And Meyerson, M. (2008) Major copy proportion analysis of tumor samples using SNP arrays. BMC Bioinformatics, 9, 204.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 204
-
-
Li, C.1
Beroukhim, R.2
Weir, B.A.3
Winckler, W.4
Garraway, L.A.5
Sellers, W.R.6
Meyerson, M.7
-
9
-
-
53349171050
-
Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays
-
Staaf, J., Lindgren, D., Vallon-Christersson, J., Isaksson, A., Goransson, H., Juliusson, G., Rosenquist, R., Hoglund, M., Borg, A. And Ringnér, M. (2008) Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays. Genome Biol., 9, R136.
-
(2008)
Genome Biol.
, vol.9
, pp. R136
-
-
Staaf, J.1
Lindgren, D.2
Vallon-Christersson, J.3
Isaksson, A.4
Goransson, H.5
Juliusson, G.6
Rosenquist, R.7
Hoglund, M.8
Borg, A.9
Ringnér, M.10
-
10
-
-
41549089945
-
SNP arrays in heterogeneous tissue: Highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples
-
Assié, G., LaFramboise, T., Platzer, P., Bertherat, J., Stratakis, C. And Eng, C. (2008) SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples. Am. J. Hum. Genet., 82, 903-915.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 903-915
-
-
Assié, G.1
LaFramboise, T.2
Platzer, P.3
Bertherat, J.4
Stratakis, C.5
Eng, C.6
-
11
-
-
79551522261
-
Estimation of parent specific DNA copy number in tumors using high-density genotyping arrays
-
Chen, H., Xing, H. And Zhang, N. (2011) Estimation of parent specific DNA copy number in tumors using high-density genotyping arrayS. PLoS Comput. Biol., 7, e1001060.
-
(2011)
PLoS Comput. Biol.
, vol.7
, pp. e1001060
-
-
Chen, H.1
Xing, H.2
Zhang, N.3
-
12
-
-
70449704529
-
Computational methods for discovering structural variation with next-generation sequencing
-
Medvedev, P., Stanciu, M. And Brudno, M. (2009) Computational methods for discovering structural variation with next-generation sequencing. Nat. Methods, 6, S13-S20.
-
(2009)
Nat. Methods
, vol.6
, pp. S13-S20
-
-
Medvedev, P.1
Stanciu, M.2
Brudno, M.3
-
13
-
-
84860782006
-
Absolute quantification of somatic DNA alterations in human cancer
-
Carter, S. L., Cibulskis, K., Helman, E., McKenna, A., Shen, H., Zack, T., Laird, P. W., Onofrio, R. C., Winckler, W., Weir, B. A. et al. (2012) Absolute quantification of somatic DNA alterations in human cancer. Nat. Biotechnol., 30, 413-421.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 413-421
-
-
Carter, S.L.1
Cibulskis, K.2
Helman, E.3
McKenna, A.4
Shen, H.5
Zack, T.6
Laird, P.W.7
Onofrio, R.C.8
Winckler, W.9
Weir, B.A.10
-
14
-
-
84875341635
-
Patchwork: Allele-specific copy number analysis of whole-genome sequenced tumor tissue
-
Mayrhofer, M., DiLorenzo, S., Isaksson, A et al. (2013) Patchwork: Allele-specific copy number analysis of whole-genome sequenced tumor tissue. Genome Biol., 14, R24.
-
(2013)
Genome Biol.
, vol.14
, pp. R24
-
-
Mayrhofer, M.1
DiLorenzo, S.2
Isaksson, A.3
-
15
-
-
84866240316
-
Change-point model on nonhomogeneous Poisson processes with application in copy number profiling by next-generation DNA sequencing
-
Shen, J. And Zhang, N. (2012) Change-point model on nonhomogeneous Poisson processes with application in copy number profiling by next-generation DNA sequencing. Ann. Appl. Stat., 6, 476-496.
-
(2012)
Ann. Appl. Stat.
, vol.6
, pp. 476-496
-
-
Shen, J.1
Zhang, N.2
-
16
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
Olshen, A., Venkatraman, E., Lucito, R. And Wigler, M. (2004) Circular binary segmentation for the analysis of array-based DNA copy number data. Biostatistics, 5, 557-572.
-
(2004)
Biostatistics
, vol.5
, pp. 557-572
-
-
Olshen, A.1
Venkatraman, E.2
Lucito, R.3
Wigler, M.4
-
17
-
-
34147104969
-
A faster circular binary segmentation algorithm for the analysis of array CGH data
-
Venkatraman, E. And Olshen, A. (2007) A faster circular binary segmentation algorithm for the analysis of array CGH data. Bioinformatics, 23, 657-663.
-
(2007)
Bioinformatics
, vol.23
, pp. 657-663
-
-
Venkatraman, E.1
Olshen, A.2
-
18
-
-
34247243220
-
A modified Bayes information criterion with applications to the analysis of comparative genomic hybridization data
-
Zhang, N. And Siegmund, D. (2007) A modified Bayes information criterion with applications to the analysis of comparative genomic hybridization data. Biometrics, 63, 22-32.
-
(2007)
Biometrics
, vol.63
, pp. 22-32
-
-
Zhang, N.1
Siegmund, D.2
-
19
-
-
84900240968
-
High sensitivity detection and quantitation of DNA copy number and single nucleotide variants with single color droplet digital PCR
-
Miotke, L., Lau, B. T., Rumma, R. T. And Ji, H. P. (2014) High sensitivity detection and quantitation of DNA copy number and single nucleotide variants with single color droplet digital PCR. Anal. Chem., 86, 2618-2624.
-
(2014)
Anal. Chem.
, vol.86
, pp. 2618-2624
-
-
Miotke, L.1
Lau, B.T.2
Rumma, R.T.3
Ji, H.P.4
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