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Volumn 40, Issue 4, 2015, Pages 791-798

Knowledge-based analysis of functional impacts of mutations in microRNA seed regions

Author keywords

Gene ontology; microRNA; mutation; semantic similarity

Indexed keywords

EPIDERMAL GROWTH FACTOR RECEPTOR; HSA MIR 96; MICRORNA; NEUROTROPHIN RECEPTOR; UNCLASSIFIED DRUG; MIRN96 MICRORNA, HUMAN; PROTEIN TYROSINE KINASE A;

EID: 84945185358     PISSN: 02505991     EISSN: 09737138     Source Type: Journal    
DOI: 10.1007/s12038-015-9560-2     Document Type: Article
Times cited : (7)

References (24)
  • 1
    • 33846118697 scopus 로고    scopus 로고
    • PolymiRTS database: linking polymorphisms in microRNA target sites with complex traits
    • COI: 1:CAS:528:DC%2BD2sXivFGntQ%3D%3D, PID: 17099235
    • Bao L et al. 2007 PolymiRTS database: linking polymorphisms in microRNA target sites with complex traits. Nucleic Acids Res.35 D51–D54
    • (2007) Nucleic Acids Res , vol.35 , pp. 51-54
    • Bao, L.1
  • 2
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • COI: 1:CAS:528:DC%2BD2cXhtVals7o%3D, PID: 14744438
    • Bartel DP 2004 MicroRNAs: genomics, biogenesis, mechanism, and function. Cell116 281–297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 3
    • 84875362088 scopus 로고    scopus 로고
    • SomamiR: a database for somatic mutations impacting microRNA function in cancer
    • COI: 1:CAS:528:DC%2BC38XhvV2ktrvM, PID: 23180788
    • Bhattacharya A, Ziebarth JD and Cui Y 2013 SomamiR: a database for somatic mutations impacting microRNA function in cancer. Nucleic Acids Res.41 D977–D982
    • (2013) Nucleic Acids Res , vol.41 , pp. 977-982
    • Bhattacharya, A.1    Ziebarth, J.D.2    Cui, Y.3
  • 4
    • 84891770518 scopus 로고    scopus 로고
    • PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways
    • COI: 1:CAS:528:DC%2BC2cXoslCm, PID: 24163105
    • Bhattacharya A, Ziebarth JD and Cui Y 2014 PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. Nucleic Acids Res.42 D86–D91
    • (2014) Nucleic Acids Res , vol.42 , pp. 86-91
    • Bhattacharya, A.1    Ziebarth, J.D.2    Cui, Y.3
  • 5
    • 0842321501 scopus 로고    scopus 로고
    • MicroRNA targets in drosophila
    • PID: 14709173
    • Enright AJ et al. 2003 MicroRNA targets in drosophila. Genome Biol.5 R1
    • (2003) Genome Biol , vol.5 , pp. 1
    • Enright, A.J.1
  • 6
    • 84882747406 scopus 로고    scopus 로고
    • Furness DN et al. 2013 Progressive hearing loss and gradual deterioration of sensory hair bundles in the ears of mice lacking the actin-binding protein Eps8L2. Proc. Natl. Acad. Sci. USA 110 13898–13903
    • Furness DN et al. 2013 Progressive hearing loss and gradual deterioration of sensory hair bundles in the ears of mice lacking the actin-binding protein Eps8L2. Proc. Natl. Acad. Sci. USA110 13898–13903
  • 7
    • 84918770022 scopus 로고    scopus 로고
    • Functional and evolutionary significance of human MicroRNA seed region mutations
    • PID: 25501359
    • Hill CG et al. 2014 Functional and evolutionary significance of human MicroRNA seed region mutations. PLoS One9 e115241
    • (2014) PLoS One , vol.9
    • Hill, C.G.1
  • 8
    • 84859241050 scopus 로고    scopus 로고
    • A single-base substitution in the seed region of miR-184 causes EDICT syndrome
    • COI: 1:CAS:528:DC%2BC38XjtVKrtr8%3D, PID: 22131394
    • Iliff BW, Riazuddin SA and Gottsch JD 2012 A single-base substitution in the seed region of miR-184 causes EDICT syndrome. Invest. Ophthalmol. Vis. Sci.53 348–353
    • (2012) Invest. Ophthalmol. Vis. Sci , vol.53 , pp. 348-353
    • Iliff, B.W.1    Riazuddin, S.A.2    Gottsch, J.D.3
  • 9
    • 84886947761 scopus 로고    scopus 로고
    • Genome-wide in silico screening for microRNA genetic variability in livestock species
    • COI: 1:CAS:528:DC%2BC3sXhs12mtbnP, PID: 23865691
    • Jevsinek Skok D et al. 2013 Genome-wide in silico screening for microRNA genetic variability in livestock species. Anim. Genet.44 669–677
    • (2013) Anim. Genet , vol.44 , pp. 669-677
    • Jevsinek Skok, D.1
  • 10
    • 0347755531 scopus 로고    scopus 로고
    • The UCSC Table Browser data retrieval tool
    • COI: 1:CAS:528:DC%2BD3sXhtVSrurfP, PID: 14681465
    • Karolchik D et al. 2004 The UCSC Table Browser data retrieval tool. Nucleic Acids Res.32 D493–D496
    • (2004) Nucleic Acids Res , vol.32 , pp. 493-496
    • Karolchik, D.1
  • 11
    • 84891818318 scopus 로고    scopus 로고
    • miRBase: annotating high confidence microRNAs using deep sequencing data
    • COI: 1:CAS:528:DC%2BC2cXos1Wk, PID: 24275495
    • Kozomara A and Griffiths-Jones S 2014 miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res.42 D68–D73
    • (2014) Nucleic Acids Res , vol.42 , pp. 68-73
    • Kozomara, A.1    Griffiths-Jones, S.2
  • 12
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets
    • COI: 1:CAS:528:DC%2BD2MXot1ChsA%3D%3D, PID: 15652477
    • Lewis BP, Burge CB and Bartel DP 2005 Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are MicroRNA targets. Cell120 15–20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 13
    • 67349223927 scopus 로고    scopus 로고
    • Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss
    • COI: 1:CAS:528:DC%2BD1MXksVels7w%3D, PID: 19363479
    • Mencia A et al. 2009 Mutations in the seed region of human miR-96 are responsible for nonsyndromic progressive hearing loss. Nat. Genet.41 609–613
    • (2009) Nat. Genet , vol.41 , pp. 609-613
    • Mencia, A.1
  • 14
    • 84897742116 scopus 로고    scopus 로고
    • Common features of microRNA target prediction tools
    • PID: 24600468
    • Peterson SM et al. 2014 Common features of microRNA target prediction tools. Front. Genet.5 23
    • (2014) Front. Genet , vol.5 , pp. 23
    • Peterson, S.M.1
  • 15
    • 79959923522 scopus 로고    scopus 로고
    • g:Profiler--a web server for functional interpretation of gene lists (2011 update)
    • COI: 1:CAS:528:DC%2BC3MXosVOntbs%3D, PID: 21646343
    • Reimand J, Arak T and Vilo J 2011 g:Profiler--a web server for functional interpretation of gene lists (2011 update). Nucleic Acids Res.39 W307–W315
    • (2011) Nucleic Acids Res , vol.39 , pp. 307-315
    • Reimand, J.1    Arak, T.2    Vilo, J.3
  • 16
    • 34547571030 scopus 로고    scopus 로고
    • g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments
    • PID: 17478515
    • Reimand J et al. 2007 g:Profiler--a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res.35 W193–W200
    • (2007) Nucleic Acids Res , vol.35 , pp. 193-200
    • Reimand, J.1
  • 17
    • 33745615379 scopus 로고    scopus 로고
    • Progressive hearing loss in mice carrying a mutation in the p75 gene
    • COI: 1:CAS:528:DC%2BD28XmslGiuro%3D, PID: 16564506
    • Sato T et al. 2006 Progressive hearing loss in mice carrying a mutation in the p75 gene. Brain Res.1091 224–234
    • (2006) Brain Res , vol.1091 , pp. 224-234
    • Sato, T.1
  • 18
    • 84874730555 scopus 로고    scopus 로고
    • RamiGO: an R/Bioconductor package providing an AmiGO visualize interface
    • PID: 23297033
    • Schroder MS et al. 2013 RamiGO: an R/Bioconductor package providing an AmiGO visualize interface. Bioinformatics29 666–668
    • (2013) Bioinformatics , vol.29 , pp. 666-668
    • Schroder, M.S.1
  • 19
    • 0035173378 scopus 로고    scopus 로고
    • dbSNP: the NCBI database of genetic variation
    • COI: 1:CAS:528:DC%2BD3MXjtlWmtb0%3D, PID: 11125122
    • Sherry ST et al. 2001 dbSNP: the NCBI database of genetic variation. Nucleic Acids Res.29 308–311
    • (2001) Nucleic Acids Res , vol.29 , pp. 308-311
    • Sherry, S.T.1
  • 20
    • 77951964981 scopus 로고    scopus 로고
    • Posttranscriptional regulation of microRNA biogenesis in animals
    • COI: 1:CAS:528:DC%2BC3cXms1alsLk%3D, PID: 20471939
    • Siomi H and Siomi MC 2010 Posttranscriptional regulation of microRNA biogenesis in animals. Mol. Cell.38 323–332
    • (2010) Mol. Cell , vol.38 , pp. 323-332
    • Siomi, H.1    Siomi, M.C.2
  • 21
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of GO terms
    • COI: 1:CAS:528:DC%2BD2sXntVOjur8%3D, PID: 17344234
    • Wang JZ et al. 2007 A new method to measure the semantic similarity of GO terms. Bioinformatics23 1274–1281
    • (2007) Bioinformatics , vol.23 , pp. 1274-1281
    • Wang, J.Z.1
  • 22
    • 58549086017 scopus 로고    scopus 로고
    • The deep evolution of metazoan microRNAs
    • COI: 1:CAS:528:DC%2BD1MXislOgs78%3D, PID: 19196333
    • Wheeler BM et al. 2009 The deep evolution of metazoan microRNAs. Evol. Dev.11 50–68
    • (2009) Evol. Dev , vol.11 , pp. 50-68
    • Wheeler, B.M.1
  • 23
    • 77951942707 scopus 로고    scopus 로고
    • GOSemSim: an R package for measuring semantic similarity among GO terms and gene products
    • COI: 1:CAS:528:DC%2BC3cXjvFyku78%3D, PID: 20179076
    • Yu G et al. 2010 GOSemSim: an R package for measuring semantic similarity among GO terms and gene products. Bioinformatics26 976–978
    • (2010) Bioinformatics , vol.26 , pp. 976-978
    • Yu, G.1
  • 24
    • 84862162057 scopus 로고    scopus 로고
    • Ziebarth JD et al 2012 PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res. 40 D216–D221
    • Ziebarth JD et al 2012 PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits. Nucleic Acids Res.40 D216–D221


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