Customized internal reference controls for improved assessment of circulating micrornas in disease

PLoS ONE

Volumn 10, Issue 5, 2015, Pages

  Schlosser, Kenny ^a   McIntyre, Lauralyn A ^a   White, R James ^b,c   Stewart, Duncan J ^a,d  

^a OTTAWA HOSPITAL RESEARCH INSTITUTE   (Canada)

^b UNIVERSITY OF ROCHESTER MEDICAL CENTER   (United States)

^c UNIVERSITY OF ROCHESTER   (United States)

^d UNIVERSITY OF OTTAWA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; MICRORNA 142 3P; MICRORNA 222 3P; MICRORNA 26A; MICRORNA 320A; MICRORNA 328; MICRORNA 39; MICRORNA 3909; MICRORNA 486 5P; MICRORNA 766; MICRORNA LET 7D 3P; MICRORNA LET 7G; UNCLASSIFIED DRUG;

ARTICLE; COHORT ANALYSIS; CONTROLLED STUDY; DOWN REGULATION; FEASIBILITY STUDY; GENE EXPRESSION; HUMAN; MEASUREMENT ACCURACY; MOLECULAR STABILITY; PULMONARY HYPERTENSION; RECEIVER OPERATING CHARACTERISTIC; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; SEPTIC SHOCK; UPREGULATION; BLOOD; CLINICAL TRIAL; GENETICS; MULTICENTER STUDY; PROCEDURES; REAL TIME POLYMERASE CHAIN REACTION; STANDARD; STANDARDS;

HYPERTENSION, PULMONARY; MICRORNAS; REAL-TIME POLYMERASE CHAIN REACTION; REFERENCE STANDARDS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; SHOCK, SEPTIC;

EID: 84944778611     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0127443     Document Type: Article

References (35)

1. Small EM, Olson EN. Pervasive roles of microRNAs in cardiovascular biology. Nature. 2011; 469 (7330):336-42. Epub 2011/01/21. nature09783 [pii] doi: 10.1038/nature09783 PMID: 21248840; PubMed Central PMCID: PMC3073349.
2. Gupta SK, Bang C, Thum T. Circulating microRNAs as biomarkers and potential paracrine mediators of cardiovascular disease. Circ Cardiovasc Genet. 2010; 3(5):484-8. Epub 2010/10/21. 3/5/484 [pii] doi: 10.1161/CIRCGENETICS.110.958363 PMID: 20959591.
3. Cortez MA, Bueso-Ramos C, Ferdin J, Lopez-Berestein G, Sood AK, Calin GA. MicroRNAs in body fluids-the mix of hormones and biomarkers. Nat Rev Clin Oncol. 2011; 8(8):467-77. Epub 2011/06/08. nrclinonc.2011.76 [pii] doi: 10.1038/nrclinonc.2011.76 PMID: 21647195.
4. Zhang Y, Liu D, Chen X, Li J, Li L, Bian Z, et al. Secreted monocytic miR-150 enhances targeted endothelial cell migration. Mol Cell. 2010; 39(1):133-44. Epub 2010/07/07. S1097-2765(10)00451-X [pii] doi: 10.1016/j.molcel.2010.06.010 PMID: 20603081.
5. Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells. Nat Cell Biol. 2007; 9(6):654-9. Epub 2007/05/09. ncb1596 [pii] doi: 10.1038/ncb1596 PMID: 17486113.
6. Kosaka N, Iguchi H, Yoshioka Y, Takeshita F, Matsuki Y, Ochiya T. Secretory mechanisms and intercellular transfer of microRNAs in living cells. J Biol Chem. 2010; 285(23):17442-52. Epub 2010/04/01. M110.107821 [pii] doi: 10.1074/jbc.M110.107821 PMID: 20353945; PubMed Central PMCID: PMC2878508.
7. Collino F, Deregibus MC, Bruno S, Sterpone L, Aghemo G, Viltono L, et al. Microvesicles derived from adult human bone marrow and tissue specific mesenchymal stem cells shuttle selected pattern of miRNAs. PLoS One. 2010; 5(7):e11803. Epub 2010/07/30. doi: 10.1371/journal.pone.0011803 PMID: 20668554; PubMed Central PMCID: PMC2910725.
8. Hergenreider E, Heydt S, Treguer K, Boettger T, Horrevoets AJ, Zeiher AM, et al. Atheroprotective communication between endothelial cells and smooth muscle cells through miRNAs. Nat Cell Biol. 2012; 14(3):249-56. Epub 2012/02/14. ncb2441 [pii] doi: 10.1038/ncb2441.22327366 PMID: 22327366
9. Cantaluppi V, Gatti S, Medica D, Figliolini F, Bruno S, Deregibus MC, et al. Microvesicles derived from endothelial progenitor cells protect the kidney from ischemia-reperfusion injury by microRNA-dependent reprogramming of resident renal cells. Kidney Int. 2012; 82(4):412-27. Epub 2012/04/13. ki2012105 [pii] doi: 10.1038/ki.2012.105 PMID: 22495296.
10. Mittelbrunn M, Gutierrez-Vazquez C, Villarroya-Beltri C, Gonzalez S, Sanchez-Cabo F, Gonzalez MA, et al. Unidirectional transfer of microRNA-loaded exosomes from T cells to antigen-presenting cells. Nat Commun. 2011; 2:282. Epub 2011/04/21. ncomms1285 [pii] doi: 10.1038/ncomms1285 PMID: 21505438; PubMed Central PMCID: PMC3104548.
11. Montecalvo A, Larregina AT, Shufesky WJ, Stolz DB, Sullivan ML, Karlsson JM, et al. Mechanism of transfer of functional microRNAs between mouse dendritic cells via exosomes. Blood. 2012; 119 (3):756-66. Epub 2011/10/28. blood-2011-02-338004 [pii] doi: 10.1182/blood-2011-02-338004 PMID: 22031862; PubMed Central PMCID: PMC3265200.
12. Brase JC, Wuttig D, Kuner R, Sultmann H. Serum microRNAs as non-invasive biomarkers for cancer. Mol Cancer. 2010; 9:306. Epub 2010/11/30. 1476-4598-9-306 [pii] doi: 10.1186/1476-4598-9-306 PMID: 21110877; PubMed Central PMCID: PMC3002336.
13. Reid G, Kirschner MB, van Zandwijk N. Circulating microRNAs: Association with disease and potential use as biomarkers. Crit Rev Oncol Hematol. 2010. Epub 2010/12/15. S1040-8428(10)00261-1 [pii] doi: 10.1016/j.critrevonc.2010.11.004 PMID: 21145252.
14. Wittmann J, Jack HM. Serum microRNAs as powerful cancer biomarkers. Biochim Biophys Acta. 2010; 1806(2):200-7. Epub 2010/07/20. S0304-419X(10)00052-1 [pii] doi: 10.1016/j.bbcan.2010.07.002 PMID: 20637263.
15. De Rosa S, Fichtlscherer S, Lehmann R, Assmus B, Dimmeler S, Zeiher AM. Transcoronary concentration gradients of circulating microRNAs. Circulation. 2011; 124(18):1936-44. Epub 2011/10/05. CIRCULATIONAHA. 111.037572 [pii] doi: 10.1161/CIRCULATIONAHA.111.037572 PMID: 21969012.
16. Fichtlscherer S, De Rosa S, Fox H, Schwietz T, Fischer A, Liebetrau C, et al. Circulating microRNAs in patients with coronary artery disease. Circ Res. 2010; 107(5):677-84. Epub 2010/07/03. CIRCRESAHA. 109.215566 [pii] doi: 10.1161/CIRCRESAHA.109.215566 PMID: 20595655.
17. Ho AS, Huang X, Cao H, Christman-Skieller C, Bennewith K, Le QT, et al. Circulating miR-210 as a Novel Hypoxia Marker in Pancreatic Cancer. Transl Oncol. 2010; 3(2):109-13. Epub 2010/04/03. PMID: 20360935.
18. Wang K, Zhang S, Marzolf B, Troisch P, Brightman A, Hu Z, et al. Circulating microRNAs, potential biomarkers for drug-induced liver injury. Proc Natl Acad Sci U S A. 2009; 106(11):4402-7. Epub 2009/02/28. 0813371106 [pii] doi: 10.1073/pnas.0813371106 PMID: 19246379.
19. Bauters C, Kumarswamy R, Holzmann A, Bretthauer J, Anker SD, Pinet F, et al. Circulating miR-133a and miR-423-5p fail as biomarkers for left ventricular remodeling after myocardial infarction. Int J Cardiol. 2013; 168(3):1837-40. Epub 2013/01/26. S0167-5273(12)01703-2 [pii] doi: 10.1016/j.ijcard.2012. 12.074 PMID: 23347612.
20. Mitchell PS, Parkin RK, Kroh EM, Fritz BR, Wyman SK, Pogosova-Agadjanyan EL, et al. Circulating microRNAs as stable blood-based markers for cancer detection. Proc Natl Acad Sci U S A. 2008; 105 (30):10513-8. Epub 2008/07/30. 0804549105 [pii] doi: 10.1073/pnas.0804549105 PMID: 18663219.
21. Schlosser K, White RJ, Stewart DJ. miR-26a Linked to Pulmonary Hypertension by Global Assessment of Circulating Extracellular MicroRNAs. Am J Respir Crit Care Med. 2013; 188(12):1472-5. Epub 2013/12/18. doi: 10.1164/rccm.201308-1403LE PMID: 24328779.
22. McIntyre LA, Fergusson DA, Cook DJ, Rowe BH, Bagshaw SM, Easton D, et al. Fluid Resuscitation with 5% albumin versus Normal Saline in Early Septic Shock: a pilot randomized, controlled trial. J Crit Care. 2012; 27(3):317 e1-6. Epub 2011/12/20. S0883-9441(11)00449-7 [pii] doi: 10.1016/j.jcrc.2011. 10.007 PMID: 22176806.
23. Wylie D, Shelton J, Choudhary A, Adai AT. A novel mean-centering method for normalizing microRNA expression from high-throughput RT-qPCR data. BMC Res Notes. 2011; 4:555. Epub 2011/12/23. 1756-0500-4-555 [pii] doi: 10.1186/1756-0500-4-555 PMID: 22188771; PubMed Central PMCID: PMC3267743.
24. Andersen CL, Jensen JL, Orntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004; 64(15):5245-50. Epub 2004/08/04. doi: 10. 1158/0008-5472.CAN-04-0496 64/15/5245 [pii]. PMID: 15289330.
25. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, et al. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002; 3(7):RESEARCH0034. Epub 2002/08/20. PMID: 12184808; PubMed Central PMCID: PMC126239.
26. Resnick KE, Alder H, Hagan JP, Richardson DL, Croce CM, Cohn DE. The detection of differentially expressed microRNAs from the serum of ovarian cancer patients using a novel real-time PCR platform. Gynecol Oncol. 2009; 112(1):55-9. Epub 2008/10/29. S0090-8258(08)00683-5 [pii] doi: 10.1016/j. ygyno.2008.08.036 PMID: 18954897.
27. Makino K, Jinnin M, Kajihara I, Honda N, Sakai K, Masuguchi S, et al. Circulating miR-142-3p levels in patients with systemic sclerosis. Clin Exp Dermatol. 2012; 37(1):34-9. Epub 2011/09/03. doi: 10.1111/j.1365-2230.2011.04158.x PMID: 21883400.
28. Lorenzen JM, Kielstein JT, Hafer C, Gupta SK, Kumpers P, Faulhaber-Walter R, et al. Circulating miR-210 predicts survival in critically ill patients with acute kidney injury. Clin J Am Soc Nephrol. 2011; 6 (7):1540-6. Epub 2011/06/28. CJN.00430111 [pii] doi: 10.2215/CJN.00430111 PMID: 21700819.
29. Liu SS, Wang YS, Sun YF, Miao LX, Wang J, Li YS, et al. Plasma microRNA-320, microRNA-let-7e and microRNA-21 as novel potential biomarkers for the detection of retinoblastoma. Biomed Rep. 2014; 2 (3):424-8. Epub 2014/04/22. doi: 10.3892/br.2014.246 br-02-03-0424 [pii]. PMID: 24748987; PubMed Central PMCID: PMC3990201.
30. Leidner RS, Li L, Thompson CL. Dampening enthusiasm for circulating microRNA in breast cancer. PLoS One. 2013; 8(3):e57841. Epub 2013/03/09. doi: 10.1371/journal.pone.0057841 PONE-D-12-32713 [pii]. PMID: 23472110; PubMed Central PMCID: PMC3589476.
31. Ramkissoon SH, Mainwaring LA, Ogasawara Y, Keyvanfar K, McCoy JP Jr., Sloand EM, et al. Hematopoietic-specific microRNA expression in human cells. Leuk Res. 2006; 30(5):643-7. Epub 2005/10/18. S0145-2126(05)00356-5 [pii] doi: 10.1016/j.leukres.2005.09.001 PMID: 16226311.
32. Lu X, Li X, He Q, Gao J, Gao Y, Liu B, et al. miR-142-3p regulates the formation and differentiation of hematopoietic stem cells in vertebrates. Cell Res. 2013; 23(12):1356-68. Epub 2013/10/30. cr2013145 [pii] doi: 10.1038/cr.2013.145 PMID: 24165894.
33. Guduric-Fuchs J O'Connor A, Camp B, O'Neill CL, Medina RJ, Simpson DA. Selective extracellular vesicle-mediated export of an overlapping set of microRNAs from multiple cell types. BMC Genomics. 2012; 13:357. Epub 2012/08/02. 1471-2164-13-357 [pii] doi: 10.1186/1471-2164-13-357 PMID: 22849433; PubMed Central PMCID: PMC3532190.
34. Arroyo JD, Chevillet JR, Kroh EM, Ruf IK, Pritchard CC, Gibson DF, et al. Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma. Proc Natl Acad Sci U S A. 2011; 108(12):5003-8. Epub 2011/03/09. 1019055108 [pii] doi: 10.1073/pnas.1019055108 PMID: 21383194; PubMed Central PMCID: PMC3064324.
35. Reid G, Kirschner MB, van Zandwijk N. Circulating microRNAs: Association with disease and potential use as biomarkers. Crit Rev Oncol Hematol. 2011; 80(2):193-208. Epub 2010/12/15. S1040-8428(10) 00261-1 [pii] doi: 10.1016/j.critrevonc.2010.11.004 PMID: 21145252.