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Volumn 2015-July, Issue , 2015, Pages 220-225

Challenges of large-scale biomedical workflows on the cloud-a case study on the need for reproducibility of results

Author keywords

bioinformatics workflows; distributed compute resources; exome; NeCTAR Research Cloud; reproducibility

Indexed keywords

BIOINFORMATICS;

EID: 84944190291     PISSN: 10637125     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CBMS.2015.28     Document Type: Conference Paper
Times cited : (9)

References (24)
  • 1
    • 63649117166 scopus 로고    scopus 로고
    • Cloud computing and emerging it platforms: Vision, hype, and reality for delivering computing as the 5th utility
    • R. Buyya, C. S. Yeo, S. Venugopal, J. Broberg, and I. Brandic, "Cloud computing and emerging it platforms: Vision, hype, and reality for delivering computing as the 5th utility," Future Generation computer systems, vol. 25, no. 6, pp. 599-616, 2009.
    • (2009) Future Generation Computer Systems , vol.25 , Issue.6 , pp. 599-616
    • Buyya, R.1    Yeo, C.S.2    Venugopal, S.3    Broberg, J.4    Brandic, I.5
  • 2
    • 84865226981 scopus 로고    scopus 로고
    • Next-generation sequencing data interpretation: Enhancing reproducibility and accessibility
    • A. Nekrutenko and J. Taylor, "Next-generation sequencing data interpretation: enhancing reproducibility and accessibility," Nature Reviews Genetics, vol. 13, no. 9, pp. 667-672, 2012.
    • (2012) Nature Reviews Genetics , vol.13 , Issue.9 , pp. 667-672
    • Nekrutenko, A.1    Taylor, J.2
  • 3
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with burrows-wheeler transform
    • H. Li and R. Durbin, "Fast and accurate short read alignment with burrows-wheeler transform," Bioinformatics, vol. 25, no. 14, pp. 1754-1760, 2009.
    • (2009) Bioinformatics , vol.25 , Issue.14 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 6
    • 80055088241 scopus 로고    scopus 로고
    • Believe it or not: How much can we rely on published data on potential drug targets?
    • F. Prinz, T. Schlange, and K. Asadullah, "Believe it or not: how much can we rely on published data on potential drug targets" Nature reviews Drug discovery, vol. 10, no. 9, pp. 712-712, 2011.
    • (2011) Nature Reviews Drug Discovery , vol.10 , Issue.9 , pp. 712-712
    • Prinz, F.1    Schlange, T.2    Asadullah, K.3
  • 10
    • 33846563409 scopus 로고    scopus 로고
    • Why most published research findings are false
    • J. P. Ioannidis, "Why most published research findings are false," PLoS medicine, vol. 2, no. 8, p. e124, 2005.
    • (2005) PLoS Medicine , vol.2 , Issue.8 , pp. e124
    • Ioannidis, J.P.1
  • 13
    • 33645451773 scopus 로고    scopus 로고
    • Benchmark for evaluating the quality of dna sequencing: Proposal from an international external quality assessment scheme
    • S. J. Patton, A. J. Wallace, and R. Elles, "Benchmark for evaluating the quality of dna sequencing: proposal from an international external quality assessment scheme," Clinical chemistry, vol. 52, no. 4, pp. 728-736, 2006.
    • (2006) Clinical Chemistry , vol.52 , Issue.4 , pp. 728-736
    • Patton, S.J.1    Wallace, A.J.2    Elles, R.3
  • 14
    • 78149299776 scopus 로고    scopus 로고
    • Reproducible in silico research in the era of cloud computing
    • J. T. Dudley and A. J. Butte, "Reproducible in silico research in the era of cloud computing," Nature biotechnology, vol. 28, no. 11, p. 1181, 2010.
    • (2010) Nature Biotechnology , vol.28 , Issue.11 , pp. 1181
    • Dudley, J.T.1    Butte, A.J.2
  • 15
    • 84864249527 scopus 로고    scopus 로고
    • Virtual appliances, cloud computing, and reproducible research
    • B. Howe, "Virtual appliances, cloud computing, and reproducible research," Computing in Science & Engineering, vol. 14, no. 4, pp. 36-41, 2012.
    • (2012) Computing in Science & Engineering , vol.14 , Issue.4 , pp. 36-41
    • Howe, B.1
  • 21
    • 84861746974 scopus 로고    scopus 로고
    • Bpipe: A tool for running and managing bioinformatics pipelines
    • S. P. Sadedin, B. Pope, and A. Oshlack, "Bpipe: a tool for running and managing bioinformatics pipelines," Bioinformatics, vol. 28, no. 11, pp. 1525-1526, 2012.
    • (2012) Bioinformatics , vol.28 , Issue.11 , pp. 1525-1526
    • Sadedin, S.P.1    Pope, B.2    Oshlack, A.3
  • 24
    • 84869862536 scopus 로고    scopus 로고
    • Cloudman as a platform for tool, data, and analysis distribution
    • E. Afgan, B. Chapman, and J. Taylor, "Cloudman as a platform for tool, data, and analysis distribution," BMC bioinformatics, vol. 13, no. 1, p. 315, 2012.
    • (2012) BMC Bioinformatics , vol.13 , Issue.1 , pp. 315
    • Afgan, E.1    Chapman, B.2    Taylor, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.