Interleukin-37 gene variants segregated anciently coexist during hominid evolution

European Journal of Human Genetics

Volumn 23, Issue 10, 2015, Pages 1392-1398

  Kang, Bin ^a   Cheng, Shimeng ^a   Peng, Jinbiao ^a   Yan, Jingjing ^a   Zhang, Shuye ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

INTERLEUKIN 37; PROTEIN VARIANT; INTERLEUKIN DERIVATIVE;

AMINO ACID SEQUENCE; ARTICLE; DNA POLYMORPHISM; DNA SEQUENCE; EVOLUTION; GENE LINKAGE DISEQUILIBRIUM; GENE SEQUENCE; GENEALOGY; GENETIC ANALYSIS; GENETIC VARIABILITY; HAPLOGROUP; HAPLOTYPE; HOMINID; HUMAN; IMMUNOREGULATION; NONHUMAN; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; ANIMAL; GENETIC SELECTION; GENETIC VARIATION; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS;

AMINO ACID SEQUENCE; ANIMALS; EVOLUTION, MOLECULAR; GENETIC VARIATION; HAPLOTYPES; HOMINIDAE; HUMANS; INTERLEUKINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SELECTION, GENETIC;

EID: 84944171231     PISSN: 10184813     EISSN: 14765438     Source Type: Journal    
DOI: 10.1038/ejhg.2014.302     Document Type: Article

References (32)

1. Boraschi D, Lucchesi D, Hainzl S et al: IL-37: a new anti-inflammatory cytokine of the IL-1 family. Eur Cytokine Netw 2011; 22: 127-147.
2. Banchereau J, Pascual V, O'Garra A: From IL-2 to IL-37: the expanding spectrum of anti-inflammatory cytokines. Nat Immunol 2012; 13: 925-931.
3. Garlanda C, Dinarello CA, Mantovani A: The interleukin-1 family: back to the future. Immunity 2013; 39: 1003-1018.
4. Bulau AM, Nold MF, Li S et al: Role of caspase-1 in nuclear translocation of IL-37, release of the cytokine, and IL-37 inhibition of innate immune responses. Proc Natl Acad Sci USA 2014; 111: 2650-2655.
5. Pan G, Risser P, Mao W et al: IL-1H, an interleukin 1-related protein that binds IL-18 receptor/IL-1Rrp. Cytokine 2001; 13: 1-7.
6. Dinarello CA: Overview of the interleukin-1 family of ligands and receptors. Semin Immunol 2013; 25: 389-393.
7. McNamee EN, Masterson JC, Jedlicka P et al: Interleukin 37 expression protects mice from colitis. Proc Natl Acad Sci USA 2011; 108: 16711-16716.
8. Nold MF, Nold-Petry CA, Zepp JA, Palmer BE, Bufler P, Dinarello CA: IL-37 is a fundamental inhibitor of innate immunity. Nat Immunol 2010; 11: 1014-1022.
9. Manry J, Quintana-Murci L: A genome-wide perspective of human diversity and its implications in infectious disease. Cold Spring Harb Perspect Med 2013; 3: a12450.
10. Quintana-Murci L, Clark AG: Population genetic tools for dissecting innate immunity in humans. Nat Rev Immunol 2013; 13: 280-293.
11. Casanova JL, Abel L, Quintana-Murci L: Immunology taught by human genetics. Cold Spring Harb Symp Quant Biol 2013;78:157-172.
12. Quach H, Wilson D, Laval G et al: Different selective pressures shape the evolution of Toll-like receptors in human and African great ape populations. Hum Mol Genet 2013; 22: 4829-4840.
13. Vasseur E, Boniotto M, Patin E et al: The evolutionary landscape of cytosolic microbial sensors in humans. Am J Hum Genet 2012; 91: 27-37.
14. Manry J, Laval G, Patin E et al: Evolutionary genetic dissection of human interferons. J Exp Med 2011; 208: 2747-2759.
15. Newman TL, Tuzun E, Morrison VA et al: A genome-wide survey of structural variation between human and chimpanzee. Genome Res 2005; 15: 1344-1356.
16. Abecasis GR, Auton A, Brooks LD et al: An integrated map of genetic variation from 1,092 human genomes. Nature 2012; 491: 56-65.
17. Wang K, Li M, Hakonarson H: ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res 2010; 38: e164.
18. Suyama M, Torrents D, Bork P: PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res 2006; 34: W609-W612.
19. Huerta-Cepas J, Dopazo J, Gabaldon T: ETE: a python Environment for Tree Exploration. BMC Bioinformatics 2010; 11: 24.
20. Yang Z: PAML 4: phylogenetic analysis by maximum likelihood. Mol Biol Evol 2007; 24: 1586-1591.
21. Bandelt HJ, Forster P, Rohl A: Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 1999; 16: 37-48.
22. Teng X, Hu Z, Wei X et al: IL-37 ameliorates the inflammatory process in psoriasis by suppressing proinflammatory cytokine production. J Immunol 2014; 192: 1815-1823.
23. Pei B, Xu S, Liu T, Pan F, Xu J, Ding C: Associations of the IL-1F7 gene polymorphisms with rheumatoid arthritis in Chinese Han population. Int J Immunogenet 2013; 40: 199-203.
24. Ge R, Pan F, Liao F et al: Analysis on the interaction between IL-1F7 gene and environmental factors on patients with ankylosing spondylitis: a case-only study. Mol Biol Rep 2011; 38: 2281-2284.
25. Pan F, Liao F, Xia G et al: Association of IL-1F7 gene with susceptibility to human leukocyte antigen-B27 positive ankylosing spondylitis in Han Chinese population. Clin Chim Acta 2010; 411: 124-126.
26. Scally A, Dutheil JY, Hillier LW et al: Insights into hominid evolution from the gorilla genome sequence. Nature 2012; 483: 169-175.
27. Casals F, Sikora M, Laayouni H et al: Genetic adaptation of the antibacterial human innate immunity network. BMC Evol Biol 2011; 11: 202.
28. Fumagalli M, Pozzoli U, Cagliani R et al: Parasites represent a major selective force for interleukin genes and shape the genetic predisposition to autoimmune conditions. J Exp Med 2009; 206: 1395-1408.
29. Ferrer-Admetlla A, Bosch E, Sikora M et al: Balancing selection is the main force shaping the evolution of innate immunity genes. J Immunol 2008; 181: 1315-1322.
30. Garrigan D, Hammer MF: Reconstructing human origins in the genomic era. Nat Rev Genet 2006; 7: 669-680.
31. Lachance J, Vernot B, Elbers CC et al: Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African hunter-gatherers. Cell 2012; 150: 457-469.
32. Hammer MF, Woerner AE, Mendez FL, Watkins JC, Wall JD: Genetic evidence for archaic admixture in Africa. Proc Natl Acad Sci USA 2011; 108: 15123-15128.