메뉴 건너뛰기




Volumn 53, Issue 12, 2015, Pages 1935-1942

Influence of storage conditions and extraction methods on the quantity and quality of circulating cell-free DNA (ccfDNA): The SPIDIA-DNAplas External Quality Assessment experience

Author keywords

circulating cell free DNA; External Quality Assessment; pre analytical phase

Indexed keywords

CELL DNA; CIRCULATING CELL FREE DNA; UNCLASSIFIED DRUG; DNA;

EID: 84944079398     PISSN: 14346621     EISSN: 14374331     Source Type: Journal    
DOI: 10.1515/cclm-2014-1161     Document Type: Article
Times cited : (75)

References (31)
  • 1
    • 52249117895 scopus 로고    scopus 로고
    • Circulating nucleic acids in plasma or serum recent developments
    • Gahan PB, Swaminathan R. Circulating nucleic acids in plasma or serum recent developments. Ann N Y Acad Sci 2008;1137:1-6.
    • (2008) Ann N y Acad Sci , vol.1137 , pp. 1-6
    • Gahan, P.B.1    Swaminathan, R.2
  • 2
    • 0036062060 scopus 로고    scopus 로고
    • Circulating nucleic acids as a tumor marker
    • Chan KC, Lo YM. Circulating nucleic acids as a tumor marker. Histol Histopathol 2002;17:937-43.
    • (2002) Histol Histopathol , vol.17 , pp. 937-943
    • Chan, K.C.1    Lo, Y.M.2
  • 4
    • 84884199943 scopus 로고    scopus 로고
    • The clinical utilization of circulating cell free DNA (CCFDNA) in blood of cancer patients
    • Elshimali YI, Khaddour H, Sarkissyan M, Wu Y, Vadgama JV. The clinical utilization of circulating cell free DNA (CCFDNA) in blood of cancer patients. Int J Mol Sci 2013;14:18925-58.
    • (2013) Int J Mol Sci , vol.14 , pp. 18925-18958
    • Elshimali, Y.I.1    Khaddour, H.2    Sarkissyan, M.3    Wu, Y.4    Vadgama, J.V.5
  • 5
    • 84898542288 scopus 로고    scopus 로고
    • Liquid biopsies: Genotyping circulating tumor DNA
    • Diaz LAJ, Bardelli A. Liquid biopsies: genotyping circulating tumor DNA. J Clin Oncol 2014;32:579-86.
    • (2014) J Clin Oncol , vol.32 , pp. 579-586
    • Diaz, L.A.J.1    Bardelli, A.2
  • 6
    • 33845476677 scopus 로고    scopus 로고
    • Circulating nucleic acid (CNAS) and cancer-A survey
    • Fleishhacker M, Schmidt B. Circulating nucleic acid (CNAS) and cancer-A survey. Biochim Biophys Acta 2007;1775:181-232.
    • (2007) Biochim Biophys Acta , vol.1775 , pp. 181-232
    • Fleishhacker, M.1    Schmidt, B.2
  • 7
  • 8
    • 77956467360 scopus 로고    scopus 로고
    • Cell-free DNA in the blood as a solid tumor biomarker-A critical appraisal of the literature
    • Jung K, Fleishhacker M, Rabien A. Cell-free DNA in the blood as a solid tumor biomarker-A critical appraisal of the literature. Clin Chim Acta 2010;411:1611-24.
    • (2010) Clin Chim Acta , vol.411 , pp. 1611-1624
    • Jung, K.1    Fleishhacker, M.2    Rabien, A.3
  • 10
    • 79251472437 scopus 로고    scopus 로고
    • Cell-free nucleic acids as potential markers for preeclampsia
    • Hahn S, Rusterholz C, Hösli I, Lapaire O. Cell-free nucleic acids as potential markers for preeclampsia. Placenta 2011;32:S17-20.
    • (2011) Placenta , vol.32 , pp. S17-20
    • Hahn, S.1    Rusterholz, C.2    Hösli, I.3    Lapaire, O.4
  • 11
    • 84873665726 scopus 로고    scopus 로고
    • Intergenotypic variation of endothelial dysfunction and inflammatory markers in eclampsia
    • Sharma D, Trivedi SS, Bhattacharjee J. Intergenotypic variation of endothelial dysfunction and inflammatory markers in eclampsia. Hypertens Pregnancy 2013;32:11-9.
    • (2013) Hypertens Pregnancy , vol.32 , pp. 11-19
    • Sharma, D.1    Trivedi, S.S.2    Bhattacharjee, J.3
  • 12
    • 84919835602 scopus 로고    scopus 로고
    • Towards standardization of cell-free DNA measurement in plasma: Controls for extraction efficiency, fragment size bias and quantification
    • Devonshire AS, Whale AS, Gutteridge A, Jones G, Cowen S, Foy CA, et al. Towards standardization of cell-free DNA measurement in plasma: controls for extraction efficiency, fragment size bias and quantification. Anal Bioanal Chem 2014;406:6499-512.
    • (2014) Anal Bioanal Chem , vol.406 , pp. 6499-6512
    • Devonshire, A.S.1    Whale, A.S.2    Gutteridge, A.3    Jones, G.4    Cowen, S.5    Foy, C.A.6
  • 13
    • 52249097227 scopus 로고    scopus 로고
    • A method for characterization of total circulating DNA
    • van der Vaart M, Pretorius PJ. A method for characterization of total circulating DNA. Ann N Y Acad Sci 2008;1137:92-7.
    • (2008) Ann N y Acad Sci , vol.1137 , pp. 92-97
    • Van Der Vaart, M.1    Pretorius, P.J.2
  • 14
    • 0642311916 scopus 로고    scopus 로고
    • Quantification of free circulating DNA as a diagnostic marker in lung cancer
    • Sozzi G, Conte D, Leon M, Ciricione R, Roz L, Ratcliffe C, et al. Quantification of free circulating DNA as a diagnostic marker in lung cancer. J Clin Oncol 2003;21:3902-8.
    • (2003) J Clin Oncol , vol.21 , pp. 3902-3908
    • Sozzi, G.1    Conte, D.2    Leon, M.3    Ciricione, R.4    Roz, L.5    Ratcliffe, C.6
  • 16
    • 72649092170 scopus 로고    scopus 로고
    • Is the role of circulating DNA as a biomarker of cancer being prematurely overrated?
    • van der Vaart M, Pretorius JP. Is the role of circulating DNA as a biomarker of cancer being prematurely overrated? Clin Biochem 2010;43:26-36.
    • (2010) Clin Biochem , vol.43 , pp. 26-36
    • Van Der Vaart, M.1    Pretorius, J.P.2
  • 18
    • 33749555957 scopus 로고    scopus 로고
    • Reproducibility of a semiquantitative measurement of circulating DNA in plasma from neoplastic patients
    • Frattini M, Balestra D, Verderio P, Gallino G, Leo E, Sozzi G, et al. Reproducibility of a semiquantitative measurement of circulating DNA in plasma from neoplastic patients. J Clin Oncol 2005;23:3163-4.
    • (2005) J Clin Oncol , vol.23 , pp. 3163-3164
    • Frattini, M.1    Balestra, D.2    Verderio, P.3    Gallino, G.4    Leo, E.5    Sozzi, G.6
  • 20
    • 0035866393 scopus 로고    scopus 로고
    • DNA fragments in the blood plasma of cancer patients: Quantitations and evidence for their origin from apoptotic and necrotic cells
    • Jahr S, Hentze H, Englisch S, Hardt D, Fackelmayer FO, Hesch RD, et al. DNA fragments in the blood plasma of cancer patients: quantitations and evidence for their origin from apoptotic and necrotic cells. Cancer Res 2001;61:1659-65.
    • (2001) Cancer Res , vol.61 , pp. 1659-1665
    • Jahr, S.1    Hentze, H.2    Englisch, S.3    Hardt, D.4    Fackelmayer, F.O.5    Hesch, R.D.6
  • 21
    • 78049435890 scopus 로고    scopus 로고
    • Origin and quantification of circulating DNA in mice with human colorectal cancer xenografts
    • Thierry AR, Mouliere F, Gongora C, Ollier J, Robert B, Ychou M, et al. Origin and quantification of circulating DNA in mice with human colorectal cancer xenografts. NAR 2010;38:6159-75.
    • (2010) NAR , vol.38 , pp. 6159-6175
    • Thierry, A.R.1    Mouliere, F.2    Gongora, C.3    Ollier, J.4    Robert, B.5    Ychou, M.6
  • 22
    • 84903549166 scopus 로고    scopus 로고
    • Multi-marker analysis of circulating cell-free DNA toward personalized medicine for colorectal cancer
    • Mouliere F, El Messaoudi S, Pang D, Dritschilo A, Thierry AR. Multi-marker analysis of circulating cell-free DNA toward personalized medicine for colorectal cancer. Mol Oncol 2014;8:927-41.
    • (2014) Mol Oncol , vol.8 , pp. 927-941
    • Mouliere, F.1    El Messaoudi, S.2    Pang, D.3    Dritschilo, A.4    Thierry, A.R.5
  • 23
    • 0038697547 scopus 로고    scopus 로고
    • Changes in concentration of DNA in serum and plasma during storage of blood samples
    • Jung M, Klotzek S, Lewandowski M, Fleischhacker M, Jung K. Changes in concentration of DNA in serum and plasma during storage of blood samples. Clin Chem 2003;49:1028-9.
    • (2003) Clin Chem , vol.49 , pp. 1028-1029
    • Jung, M.1    Klotzek, S.2    Lewandowski, M.3    Fleischhacker, M.4    Jung, K.5
  • 25
    • 84864852124 scopus 로고    scopus 로고
    • Protocol for the use of a rapid real-time PCR method for the detection of HIV-1 proviral DNA using double-stranded primer
    • Pau CP, Wells SK, Granade TC. Protocol for the use of a rapid real-time PCR method for the detection of HIV-1 proviral DNA using double-stranded primer. Methods Mol Biol 2012;903:263-71.
    • (2012) Methods Mol Biol , vol.903 , pp. 263-271
    • Pau, C.P.1    Wells, S.K.2    Granade, T.C.3
  • 26
    • 84858240544 scopus 로고    scopus 로고
    • Cell-free DNA as a biomarker in the context of cancer, viruses, and methylation
    • Stebbing J, Bower M. Cell-free DNA as a biomarker in the context of cancer, viruses, and methylation. J Infect Dis 2012;205:1032-4.
    • (2012) J Infect Dis , vol.205 , pp. 1032-1034
    • Stebbing, J.1    Bower, M.2
  • 27
    • 77449135297 scopus 로고    scopus 로고
    • Comparative evaluation of cell-free tumor DNA in blood and disseminated tumor cells in bone marrow of patients with primary breast cancer
    • Schwarzenbach H, Pantel K, Kemper B, Beeger C, Otterbach F, Kimmig R, et al. Comparative evaluation of cell-free tumor DNA in blood and disseminated tumor cells in bone marrow of patients with primary breast cancer. Breast Cancer Res 2009;11:R71.
    • (2009) Breast Cancer Res , vol.11 , pp. R71
    • Schwarzenbach, H.1    Pantel, K.2    Kemper, B.3    Beeger, C.4    Otterbach, F.5    Kimmig, R.6
  • 28
    • 84880643379 scopus 로고    scopus 로고
    • SPIDIA-DNA: An External Quality Assessment for the pre-analytical phase of blood samples used for DNAbased analyses
    • Malentacchi F, Pazzagli M, Simi L, Orlando C, Wyrich R, Hartmann CC, et al. SPIDIA-DNA: an External Quality Assessment for the pre-analytical phase of blood samples used for DNAbased analyses. Clin Chim Acta 2013;424:274-86.
    • (2013) Clin Chim Acta , vol.424 , pp. 274-286
    • Malentacchi, F.1    Pazzagli, M.2    Simi, L.3    Orlando, C.4    Wyrich, R.5    Hartmann, C.C.6
  • 29
    • 84872172864 scopus 로고    scopus 로고
    • SPIDIA-RNA: First external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses
    • Pazzagli M, Malentacchi F, Simi L, Orlando C, Wyrich R, Günther K, et al. SPIDIA-RNA: first external quality assessment for the pre-analytical phase of blood samples used for RNA based analyses. Methods 2013;59:20-31.
    • (2013) Methods , vol.59 , pp. 20-31
    • Pazzagli, M.1    Malentacchi, F.2    Simi, L.3    Orlando, C.4    Wyrich, R.5    Günther, K.6
  • 30
    • 84880610837 scopus 로고    scopus 로고
    • Optimizing blood collection, transport and storage conditions for cell free DNA increases access to prenatal testing
    • Wong D, Moturi S, Angkachatchai V, Mueller R, DeSantis G, van den Boom D, et al. Optimizing blood collection, transport and storage conditions for cell free DNA increases access to prenatal testing. Clin Biochem 2013;36:1099-114.
    • (2013) Clin Biochem , vol.36 , pp. 1099-1114
    • Wong, D.1    Moturi, S.2    Angkachatchai, V.3    Mueller, R.4    DeSantis, G.5    Van Den Boom, D.6
  • 31
    • 84884350975 scopus 로고    scopus 로고
    • A stabilizing reagent prevents cell-free DNA contamination by cellular DNA in plasma during blood storage and shipping as determined by digital PCR
    • Norton SE, Lechner JM, Williams T, Fernando MR. A stabilizing reagent prevents cell-free DNA contamination by cellular DNA in plasma during blood storage and shipping as determined by digital PCR. Clin Biochem 2013;46:1561-5.
    • (2013) Clin Biochem , vol.46 , pp. 1561-1565
    • Norton, S.E.1    Lechner, J.M.2    Williams, T.3    Fernando, M.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.