메뉴 건너뛰기




Volumn 86, Issue 5, 2015, Pages 343-352

A limit to the divergent allele advantage model supported by variable pathogen recognition across HLA-DRB1 allele lineages

Author keywords

Allele divergence; Human leukocyte antigen; Major histocompatibility complex; Pathogen recognition

Indexed keywords

HLA DRB1 ANTIGEN;

EID: 84944061296     PISSN: 00012815     EISSN: 13990039     Source Type: Journal    
DOI: 10.1111/tan.12667     Document Type: Article
Times cited : (9)

References (49)
  • 1
    • 84944059323 scopus 로고    scopus 로고
    • Sequence of the major histocompatibility complex
    • reports021.
    • Weitzman JB. Sequence of the major histocompatibility complex. Genome Biol 2000: 1: reports021. DOI: 10.1186/gb-2000-1-1-reports021
    • (2000) Genome Biol , vol.1
    • Weitzman, J.B.1
  • 2
    • 0037884727 scopus 로고    scopus 로고
    • MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years?
    • Bernatchez L, Landry C. MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? J Evol Biol 2003: 16: 363-77.
    • (2003) J Evol Biol , vol.16 , pp. 363-377
    • Bernatchez, L.1    Landry, C.2
  • 3
    • 0032426345 scopus 로고    scopus 로고
    • Natural selection at major histocompatibility complex loci of vertebrates
    • Hughes AL, Yeager M. Natural selection at major histocompatibility complex loci of vertebrates. Annu Rev Genet 1998: 32: 415-35.
    • (1998) Annu Rev Genet , vol.32 , pp. 415-435
    • Hughes, A.L.1    Yeager, M.2
  • 4
    • 77950816077 scopus 로고    scopus 로고
    • How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings
    • Spurgin LG, Richardson DS. How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings. Proc R Soc Biol Sci Ser B 2010: 277: 979-88.
    • (2010) Proc R Soc Biol Sci Ser B , vol.277 , pp. 979-988
    • Spurgin, L.G.1    Richardson, D.S.2
  • 5
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection
    • Hughes AL, Nei M. Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proc Natl Acad Sci USA 1989: 86: 958-62.
    • (1989) Proc Natl Acad Sci USA , vol.86 , pp. 958-962
    • Hughes, A.L.1    Nei, M.2
  • 6
    • 0016842119 scopus 로고
    • Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex
    • Doherty PC, Zinkernagel RM. Enhanced immunological surveillance in mice heterozygous at the H-2 gene complex. Nature 1975: 256: 50-2.
    • (1975) Nature , vol.256 , pp. 50-52
    • Doherty, P.C.1    Zinkernagel, R.M.2
  • 7
    • 0025255468 scopus 로고
    • Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci
    • Takahata N, Nei M. Allelic genealogy under overdominant and frequency-dependent selection and polymorphism of major histocompatibility complex loci. Genetics 1990: 124: 967-78.
    • (1990) Genetics , vol.124 , pp. 967-978
    • Takahata, N.1    Nei, M.2
  • 8
    • 0026776013 scopus 로고
    • Overdominant vs. frequency-dependent selection at MHC loci
    • Slade RW, McCallum HI. Overdominant vs. frequency-dependent selection at MHC loci. Genetics 1992: 132: 861-4.
    • (1992) Genetics , vol.132 , pp. 861-864
    • Slade, R.W.1    McCallum, H.I.2
  • 9
    • 0001134081 scopus 로고
    • HLA associations with malaria in Africa: some implications for MHC evolution
    • In: Klein J, Klein D, eds. Berlin Heidelberg: Springer
    • Hill AVS. HLA associations with malaria in Africa: some implications for MHC evolution. In: Klein J, Klein D, eds. Molecular Evolution of the Major Histocompatibility Complex. Berlin Heidelberg: Springer, 1991, 403-20.
    • (1991) Molecular Evolution of the Major Histocompatibility Complex , pp. 403-420
    • Hill, A.V.S.1
  • 10
    • 0025366147 scopus 로고
    • A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism
    • Takahata N. A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism. Proc Natl Acad Sci USA 1990: 87: 2419-23.
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 2419-2423
    • Takahata, N.1
  • 11
    • 0025332298 scopus 로고
    • Ancestral polymorphisms of MHC class II genes: divergent allele advantage
    • Wakeland EK, Boehme S, She JX et al. Ancestral polymorphisms of MHC class II genes: divergent allele advantage. Immunol Res 1990: 9: 115-22.
    • (1990) Immunol Res , vol.9 , pp. 115-122
    • Wakeland, E.K.1    Boehme, S.2    She, J.X.3
  • 12
    • 79960605619 scopus 로고    scopus 로고
    • Computational prediction of MHC II-antigen binding supports divergent allele advantage and explains trans-species polymorphism
    • Lenz TL. Computational prediction of MHC II-antigen binding supports divergent allele advantage and explains trans-species polymorphism. Evolution 2011: 65: 2380-90.
    • (2011) Evolution , vol.65 , pp. 2380-2390
    • Lenz, T.L.1
  • 13
    • 85047685647 scopus 로고    scopus 로고
    • MHC class II beta sequence diversity in the deer mouse (Peromyscus maniculatus): implications for models of balancing selection
    • Richman AD, Herrera LG, Nash D. MHC class II beta sequence diversity in the deer mouse (Peromyscus maniculatus): implications for models of balancing selection. Mol Ecol 2001: 10: 2765-73.
    • (2001) Mol Ecol , vol.10 , pp. 2765-2773
    • Richman, A.D.1    Herrera, L.G.2    Nash, D.3
  • 14
    • 84891543538 scopus 로고    scopus 로고
    • Divergent allele advantage at MHC-DRB through direct and maternal genotypic effects and its consequences for allele pool composition and mating
    • Lenz TL, Mueller B, Trillmich F, Wolf JB. Divergent allele advantage at MHC-DRB through direct and maternal genotypic effects and its consequences for allele pool composition and mating. Proc R Soc Biol Sci Ser B 2013: 280: 20130714.
    • (2013) Proc R Soc Biol Sci Ser B , vol.280 , pp. 20130714
    • Lenz, T.L.1    Mueller, B.2    Trillmich, F.3    Wolf, J.B.4
  • 15
    • 79551639467 scopus 로고    scopus 로고
    • HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events
    • Buhler S, Sanchez-Mazas A. HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events. PLoS One 2011: 6: e14643.
    • (2011) PLoS One , vol.6 , pp. e14643
    • Buhler, S.1    Sanchez-Mazas, A.2
  • 16
    • 84871586014 scopus 로고    scopus 로고
    • A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric
    • Bronson PG, Mack SJ, Erlich HA, Slatkin M. A sequence-based approach demonstrates that balancing selection in classical human leukocyte antigen (HLA) loci is asymmetric. Hum Mol Genet 2013: 22: 252-61.
    • (2013) Hum Mol Genet , vol.22 , pp. 252-261
    • Bronson, P.G.1    Mack, S.J.2    Erlich, H.A.3    Slatkin, M.4
  • 17
    • 84904540031 scopus 로고    scopus 로고
    • Nonsynonymous substitution rate heterogeneity in the peptide-binding region among different HLA-DRB1 lineages in humans
    • Yasukochi Y, Satta Y. Nonsynonymous substitution rate heterogeneity in the peptide-binding region among different HLA-DRB1 lineages in humans. G3 Genes Genom Genet 2014: 4: 1217-26.
    • (2014) G3 Genes Genom Genet , vol.4 , pp. 1217-1226
    • Yasukochi, Y.1    Satta, Y.2
  • 18
    • 84902068950 scopus 로고    scopus 로고
    • A human-specific allelic group of the MHC DRB1 gene in primates
    • Yasukochi Y, Satta Y. A human-specific allelic group of the MHC DRB1 gene in primates. J Physiol Anthropol 2014: 33: 14.
    • (2014) J Physiol Anthropol , vol.33 , pp. 14
    • Yasukochi, Y.1    Satta, Y.2
  • 19
    • 0026587182 scopus 로고
    • Antigen processing for presentation by class II major histocompatibility complex requires cleavage by cathepsin E
    • Bennett K, Levine T, Ellis JS et al. Antigen processing for presentation by class II major histocompatibility complex requires cleavage by cathepsin E. Eur J Immunol 1992: 22: 1519-24.
    • (1992) Eur J Immunol , vol.22 , pp. 1519-1524
    • Bennett, K.1    Levine, T.2    Ellis, J.S.3
  • 20
    • 0026733449 scopus 로고
    • Predominant naturally processed peptides bound to HLA-DR1 are derived from MHC-related molecules and are heterogeneous in size
    • Chicz RM, Urban RG, Lane WS et al. Predominant naturally processed peptides bound to HLA-DR1 are derived from MHC-related molecules and are heterogeneous in size. Nature 1992: 358: 764-8.
    • (1992) Nature , vol.358 , pp. 764-768
    • Chicz, R.M.1    Urban, R.G.2    Lane, W.S.3
  • 21
    • 0027217789 scopus 로고
    • Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1
    • Brown J, Jardetzky T, Gorga J et al. Three-dimensional structure of the human class II histocompatibility antigen HLA-DR1. Nature 1993: 364: 33-9.
    • (1993) Nature , vol.364 , pp. 33-39
    • Brown, J.1    Jardetzky, T.2    Gorga, J.3
  • 22
    • 0026447431 scopus 로고
    • The optimal number of major histocompatibility complex molecules in an individual
    • Nowak MA, Tarczy-Hornoch K, Austyn JM. The optimal number of major histocompatibility complex molecules in an individual. Proc Natl Acad Sci USA Biol Sci 1992: 89: 10896-9.
    • (1992) Proc Natl Acad Sci USA Biol Sci , vol.89 , pp. 10896-10899
    • Nowak, M.A.1    Tarczy-Hornoch, K.2    Austyn, J.M.3
  • 23
    • 58249091800 scopus 로고    scopus 로고
    • Does intra-individual major histocompatibility complex diversity keep a golden mean?
    • Woelfing B, Traulsen A, Milinski M, Boehm T. Does intra-individual major histocompatibility complex diversity keep a golden mean? Proc R Soc Biol Sci Ser B 2009: 364: 117-28.
    • (2009) Proc R Soc Biol Sci Ser B , vol.364 , pp. 117-128
    • Woelfing, B.1    Traulsen, A.2    Milinski, M.3    Boehm, T.4
  • 24
    • 0037371150 scopus 로고    scopus 로고
    • Multiple parasites are driving major histocompatibility complex polymorphism in the wild
    • Wegner KM, Reusch TBH, Kalbe M. Multiple parasites are driving major histocompatibility complex polymorphism in the wild. J Evol Biol 2003: 16: 224-32.
    • (2003) J Evol Biol , vol.16 , pp. 224-232
    • Wegner, K.M.1    Reusch, T.B.H.2    Kalbe, M.3
  • 25
    • 33750009813 scopus 로고    scopus 로고
    • MHC class I variation associates with parasite resistance and longevity in tropical pythons
    • Madsen T, Ujvari B. MHC class I variation associates with parasite resistance and longevity in tropical pythons. J Evol Biol 2006: 19: 1973-8.
    • (2006) J Evol Biol , vol.19 , pp. 1973-1978
    • Madsen, T.1    Ujvari, B.2
  • 26
    • 34547890262 scopus 로고    scopus 로고
    • Influence of genetic dissimilarity in the reproductive success and mate choice of brown trout - females fishing for optimal MHC dissimilarity
    • Forsberg LA, Dannewitz J, Petersson E, Grahn M. Influence of genetic dissimilarity in the reproductive success and mate choice of brown trout - females fishing for optimal MHC dissimilarity. J Evol Biol 2007: 20: 1859-69.
    • (2007) J Evol Biol , vol.20 , pp. 1859-1869
    • Forsberg, L.A.1    Dannewitz, J.2    Petersson, E.3    Grahn, M.4
  • 27
    • 54949148412 scopus 로고    scopus 로고
    • NHSN annual update: antimicrobial-resistant pathogens associated with healthcare-associated infections: annual summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2006-2007
    • Hidron AI, Edwards JR, Patel J et al. NHSN annual update: antimicrobial-resistant pathogens associated with healthcare-associated infections: annual summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2006-2007. Infect Control Hosp Epidemiol 2008: 29: 996-1011.
    • (2008) Infect Control Hosp Epidemiol , vol.29 , pp. 996-1011
    • Hidron, A.I.1    Edwards, J.R.2    Patel, J.3
  • 28
    • 33745815639 scopus 로고    scopus 로고
    • Human leukocyte antigens and susceptibility to tuberculosis: a meta-analysis of case-control studies
    • Kettaneh A, Seng L, Tiev KP, Tolédano C, Fabre B, Cabane J. Human leukocyte antigens and susceptibility to tuberculosis: a meta-analysis of case-control studies. Int J Tuberc Lung Dis 2006: 10: 717-25.
    • (2006) Int J Tuberc Lung Dis , vol.10 , pp. 717-725
    • Kettaneh, A.1    Seng, L.2    Tiev, K.P.3    Tolédano, C.4    Fabre, B.5    Cabane, J.6
  • 29
    • 79956147654 scopus 로고    scopus 로고
    • Association of HLA alleles with Plasmodium falciparum severity in Malian children
    • Lyke KE, Fernandez-Vina MA, Cao K et al. Association of HLA alleles with Plasmodium falciparum severity in Malian children. Tissue Antigens 2011: 77: 562-71.
    • (2011) Tissue Antigens , vol.77 , pp. 562-571
    • Lyke, K.E.1    Fernandez-Vina, M.A.2    Cao, K.3
  • 30
    • 0032703009 scopus 로고    scopus 로고
    • Induction of CD4(+) and CD8(+) Bordetella pertussis toxin subunit S1 specific T cells by immunization with synthetic peptides
    • Fagerberg J, Askelof P, Wigzell H, Mellstedt H. Induction of CD4(+) and CD8(+) Bordetella pertussis toxin subunit S1 specific T cells by immunization with synthetic peptides. Cell Immunol 1999: 196: 110-21.
    • (1999) Cell Immunol , vol.196 , pp. 110-121
    • Fagerberg, J.1    Askelof, P.2    Wigzell, H.3    Mellstedt, H.4
  • 31
    • 0026515193 scopus 로고
    • Association of Helicobacter pylori with HLA-DR antigen expression in gastritis
    • Wee A, Teh M, Kang JY. Association of Helicobacter pylori with HLA-DR antigen expression in gastritis. J Clin Pathol 1992: 45: 30-3.
    • (1992) J Clin Pathol , vol.45 , pp. 30-33
    • Wee, A.1    Teh, M.2    Kang, J.Y.3
  • 32
    • 0038049454 scopus 로고    scopus 로고
    • MHC allele-specific binding of a malaria peptide makes it become promiscuous on fitting a glycine residue into pocket 6
    • Vargas LE, Parra CA, Salazar LM, Guzman F, Pinto M, Patarroyo ME. MHC allele-specific binding of a malaria peptide makes it become promiscuous on fitting a glycine residue into pocket 6. Biochem Biophys Res Commun 2003: 307: 148-56.
    • (2003) Biochem Biophys Res Commun , vol.307 , pp. 148-156
    • Vargas, L.E.1    Parra, C.A.2    Salazar, L.M.3    Guzman, F.4    Pinto, M.5    Patarroyo, M.E.6
  • 33
    • 77957992099 scopus 로고    scopus 로고
    • A quantitative proteomics design for systematic identification of protease cleavage events
    • Impens F, Colaert N, Helsens K et al. A quantitative proteomics design for systematic identification of protease cleavage events. Mol Cell Proteomics 2010: 9: 2327-33.
    • (2010) Mol Cell Proteomics , vol.9 , pp. 2327-2333
    • Impens, F.1    Colaert, N.2    Helsens, K.3
  • 34
    • 84884907784 scopus 로고    scopus 로고
    • NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ
    • Karosiene E, Rasmussen M, Blicher T, Lund O, Buus S, Nielsen M. NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. Immunogenetics 2013: 65: 711-24.
    • (2013) Immunogenetics , vol.65 , pp. 711-724
    • Karosiene, E.1    Rasmussen, M.2    Blicher, T.3    Lund, O.4    Buus, S.5    Nielsen, M.6
  • 35
    • 57649174707 scopus 로고    scopus 로고
    • Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research
    • Huang Lin H, Lan Zhang G, Tongchusak S, Reinherz E, Brusic V. Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research. BMC Bioinformat 2008: 9: 1-10.
    • (2008) BMC Bioinformat , vol.9 , pp. 1-10
    • Huang Lin, H.1    Lan Zhang, G.2    Tongchusak, S.3    Reinherz, E.4    Brusic, V.5
  • 36
    • 0036137241 scopus 로고    scopus 로고
    • ProPred: prediction of HLA-DR binding sites
    • Singh H, Raghava GP. ProPred: prediction of HLA-DR binding sites. Bioinformatics 2001: 17: 1236-7.
    • (2001) Bioinformatics , vol.17 , pp. 1236-1237
    • Singh, H.1    Raghava, G.P.2
  • 37
    • 0033021020 scopus 로고    scopus 로고
    • Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices
    • Sturniolo T, Bono E, Ding J et al. Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices. Nat Biotechnol 1999: 17: 555-61.
    • (1999) Nat Biotechnol , vol.17 , pp. 555-561
    • Sturniolo, T.1    Bono, E.2    Ding, J.3
  • 38
    • 84875491896 scopus 로고    scopus 로고
    • Common and well-documented HLA alleles: 2012 update to the CWD catalogue
    • Mack SJ, Cano P, Hollenbach JA et al. Common and well-documented HLA alleles: 2012 update to the CWD catalogue. Tissue Antigens 2013: 81: 194-203.
    • (2013) Tissue Antigens , vol.81 , pp. 194-203
    • Mack, S.J.1    Cano, P.2    Hollenbach, J.A.3
  • 39
    • 0027973079 scopus 로고
    • The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes
    • Sette A, Vitiello A, Reherman B et al. The relationship between class I binding affinity and immunogenicity of potential cytotoxic T cell epitopes. J Immunol 1994: 153: 5586-92.
    • (1994) J Immunol , vol.153 , pp. 5586-5592
    • Sette, A.1    Vitiello, A.2    Reherman, B.3
  • 40
    • 78651292217 scopus 로고    scopus 로고
    • Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations
    • Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR. Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res 2011: 39: D913-9.
    • (2011) Nucleic Acids Res , vol.39 , pp. D913-D919
    • Gonzalez-Galarza, F.F.1    Christmas, S.2    Middleton, D.3    Jones, A.R.4
  • 41
    • 8844245014 scopus 로고
    • Some possibilities for measuring selection intensities in man
    • Crow JF. Some possibilities for measuring selection intensities in man. Hum Biol 1958: 30: 1-13.
    • (1958) Hum Biol , vol.30 , pp. 1-13
    • Crow, J.F.1
  • 43
    • 0028987610 scopus 로고
    • MHC diversity and selection
    • Takahata N. MHC diversity and selection. Immunol Rev 1995: 143: 225-47.
    • (1995) Immunol Rev , vol.143 , pp. 225-247
    • Takahata, N.1
  • 44
    • 0037564967 scopus 로고    scopus 로고
    • Pleistocene Homo sapiens from Middle Awash, Ethiopia
    • White TD, Asfaw B, DeGusta D et al. Pleistocene Homo sapiens from Middle Awash, Ethiopia. Nature 2003: 423: 742-7.
    • (2003) Nature , vol.423 , pp. 742-747
    • White, T.D.1    Asfaw, B.2    DeGusta, D.3
  • 45
    • 84944056415 scopus 로고    scopus 로고
    • Genetics of Sub-Saharan African human population: implications for HIV/AIDS, tuberculosis, and malaria
    • Mboowa G. Genetics of Sub-Saharan African human population: implications for HIV/AIDS, tuberculosis, and malaria. Int J Evol Biol 2014: 2014: 8.
    • (2014) Int J Evol Biol , vol.2014 , pp. 8
    • Mboowa, G.1
  • 46
    • 54249099940 scopus 로고    scopus 로고
    • Human genetics and malaria: relevance for the design of clinical trials
    • Parikh S, Rosenthal PJ. Human genetics and malaria: relevance for the design of clinical trials. J Infect Dis 2008: 198: 1255-7.
    • (2008) J Infect Dis , vol.198 , pp. 1255-1257
    • Parikh, S.1    Rosenthal, P.J.2
  • 48
    • 80053587649 scopus 로고    scopus 로고
    • The shaping of modern human immune systems by multiregional admixture with archaic humans
    • Abi-Rached L, Jobin MJ, Kulkarni S et al. The shaping of modern human immune systems by multiregional admixture with archaic humans. Science (New York, NY) 2011: 334: 89-94.
    • (2011) Science (New York, NY) , vol.334 , pp. 89-94
    • Abi-Rached, L.1    Jobin, M.J.2    Kulkarni, S.3
  • 49
    • 1542283570 scopus 로고    scopus 로고
    • Heterozygote advantage fails to explain the high degree of polymorphism of the MHC
    • De Boer R, Borghans JM, van Boven M, Keşmir C, Weissing F. Heterozygote advantage fails to explain the high degree of polymorphism of the MHC. Immunogenetics 2004: 55: 725-31.
    • (2004) Immunogenetics , vol.55 , pp. 725-731
    • De Boer, R.1    Borghans, J.M.2    van Boven, M.3    Keşmir, C.4    Weissing, F.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.