메뉴 건너뛰기




Volumn 137, Issue 12, 2015, Pages 2846-2857

The role of HPV RNA transcription, immune response-related gene expression and disruptive TP53 mutations in diagnostic and prognostic profiling of head and neck cancer

Author keywords

APC; consensus clustering; gene expression; head and neck squamous cell carcinoma; human papillomavirus; neck metastasis; TP53

Indexed keywords

APC PROTEIN; CYCLIN DEPENDENT KINASE INHIBITOR 2A; PROTEIN P53; VIRUS DNA; VIRUS RNA; TP53 PROTEIN, HUMAN;

EID: 84943660309     PISSN: 00207136     EISSN: 10970215     Source Type: Journal    
DOI: 10.1002/ijc.29649     Document Type: Article
Times cited : (189)

References (44)
  • 2
    • 84861805678 scopus 로고    scopus 로고
    • The molecular pathogenesis of head and neck squamous cell carcinoma
    • Rothenberg MS, Ellisen LW., The molecular pathogenesis of head and neck squamous cell carcinoma. J Clin Invest 2012; 122: 1951-7
    • (2012) J Clin Invest , vol.122 , pp. 1951-1957
    • Rothenberg, M.S.1    Ellisen, L.W.2
  • 3
    • 79952240835 scopus 로고    scopus 로고
    • Chemoprevention of head and neck cancer by green tea extract: EGCG-the role of EGFR signaling and «lipid raft»
    • Masuda M, Wakasaki T, Toh S, et al., Chemoprevention of head and neck cancer by green tea extract: EGCG-the role of EGFR signaling and «lipid raft». J Oncol 2011; 2011: 540148
    • (2011) J Oncol , vol.2011 , pp. 540148
    • Masuda, M.1    Wakasaki, T.2    Toh, S.3
  • 4
    • 39149104081 scopus 로고    scopus 로고
    • Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States
    • Chaturvedi AK, Engels EA, Anderson WF, et al., Incidence trends for human papillomavirus-related and -unrelated oral squamous cell carcinomas in the United States. J Clin Oncol 2008; 26: 612-9
    • (2008) J Clin Oncol , vol.26 , pp. 612-619
    • Chaturvedi, A.K.1    Engels, E.A.2    Anderson, W.F.3
  • 5
    • 67449090374 scopus 로고    scopus 로고
    • Incidence of human papillomavirus (HPV) positive tonsillar carcinoma in Stockholm, Sweden: An epidemic of viral-induced carcinoma?
    • Nasman A, Attner P, Hammarstedt L, et al., Incidence of human papillomavirus (HPV) positive tonsillar carcinoma in Stockholm, Sweden: an epidemic of viral-induced carcinoma? Int J Cancer 2009; 125: 362-6
    • (2009) Int J Cancer , vol.125 , pp. 362-366
    • Nasman, A.1    Attner, P.2    Hammarstedt, L.3
  • 6
    • 77954190940 scopus 로고    scopus 로고
    • Human papillomavirus and survival of patients with oropharyngeal cancer
    • Ang KK, Harris J, Wheeler R, et al., Human papillomavirus and survival of patients with oropharyngeal cancer. N Engl J Med 2010; 363: 24-35
    • (2010) N Engl J Med , vol.363 , pp. 24-35
    • Ang, K.K.1    Harris, J.2    Wheeler, R.3
  • 7
    • 3242670907 scopus 로고    scopus 로고
    • Genetic patterns in head and neck cancers that contain or lack transcriptionally active human papillomavirus
    • Braakhuis BJ, Snijders PJ, Keune WJ, et al., Genetic patterns in head and neck cancers that contain or lack transcriptionally active human papillomavirus. J Natl Cancer Inst 2004; 96: 998-1006
    • (2004) J Natl Cancer Inst , vol.96 , pp. 998-1006
    • Braakhuis, B.J.1    Snijders, P.J.2    Keune, W.J.3
  • 8
    • 77949890036 scopus 로고    scopus 로고
    • Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma
    • Jung AC, Briolat J, Millon R, et al., Biological and clinical relevance of transcriptionally active human papillomavirus (HPV) infection in oropharynx squamous cell carcinoma. Int J Cancer 2010; 126: 1882-94
    • (2010) Int J Cancer , vol.126 , pp. 1882-1894
    • Jung, A.C.1    Briolat, J.2    Millon, R.3
  • 9
    • 36549011250 scopus 로고    scopus 로고
    • Human papillomavirus is a favourable prognostic factor in tonsillar cancer and its oncogenic role is supported by the expression of E6 and E7
    • Lindquist D, Romanitan M, Hammarstedt L, et al., Human papillomavirus is a favourable prognostic factor in tonsillar cancer and its oncogenic role is supported by the expression of E6 and E7. Mol Oncol 2007; 1: 350-5
    • (2007) Mol Oncol , vol.1 , pp. 350-355
    • Lindquist, D.1    Romanitan, M.2    Hammarstedt, L.3
  • 10
    • 85047700479 scopus 로고    scopus 로고
    • Involvement of intact HPV16 E6/E7 gene expression in head and neck cancers with unaltered p53 status and perturbed pRb cell cycle control
    • Wiest T, Schwarz E, Enders C, et al., Involvement of intact HPV16 E6/E7 gene expression in head and neck cancers with unaltered p53 status and perturbed pRb cell cycle control. Oncogene 2002; 21: 1510-7
    • (2002) Oncogene , vol.21 , pp. 1510-1517
    • Wiest, T.1    Schwarz, E.2    Enders, C.3
  • 11
    • 84874327940 scopus 로고    scopus 로고
    • Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes
    • Walter V, Yin X, Wilkerson MD, et al., Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes. PLoS One 2013; 8: e56823
    • (2013) PLoS One , vol.8 , pp. e56823
    • Walter, V.1    Yin, X.2    Wilkerson, M.D.3
  • 12
    • 2342492313 scopus 로고    scopus 로고
    • Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression
    • Chung CH, Parker JS, Karaca G, et al., Molecular classification of head and neck squamous cell carcinomas using patterns of gene expression. Cancer Cell 2004; 5: 489-500
    • (2004) Cancer Cell , vol.5 , pp. 489-500
    • Chung, C.H.1    Parker, J.S.2    Karaca, G.3
  • 13
    • 84867116870 scopus 로고    scopus 로고
    • Viral RNA patterns and high viral load reliably define oropharynx carcinomas with active HPV16 involvement
    • Holzinger D, Schmitt M, Dyckhoff G, et al., Viral RNA patterns and high viral load reliably define oropharynx carcinomas with active HPV16 involvement. Cancer Res 2012; 72: 4993-5003
    • (2012) Cancer Res , vol.72 , pp. 4993-5003
    • Holzinger, D.1    Schmitt, M.2    Dyckhoff, G.3
  • 14
    • 84868204607 scopus 로고    scopus 로고
    • Biological activity of probable/possible high-risk human papillomavirus types in cervical cancer
    • Halec G, Schmitt M, Dondog B, et al., Biological activity of probable/possible high-risk human papillomavirus types in cervical cancer. Int J Cancer 2013; 132: 63-71
    • (2013) Int J Cancer , vol.132 , pp. 63-71
    • Halec, G.1    Schmitt, M.2    Dondog, B.3
  • 15
    • 84880294033 scopus 로고    scopus 로고
    • Biological evidence for a causal role of HPV16 in a small fraction of laryngeal squamous cell carcinoma
    • Halec G, Holzinger D, Schmitt M, et al., Biological evidence for a causal role of HPV16 in a small fraction of laryngeal squamous cell carcinoma. Br J Cancer 2013; 109: 172-83
    • (2013) Br J Cancer , vol.109 , pp. 172-183
    • Halec, G.1    Holzinger, D.2    Schmitt, M.3
  • 16
    • 84878607651 scopus 로고    scopus 로고
    • HPV-related methylation signature predicts survival in oropharyngeal squamous cell carcinomas
    • Kostareli E, Holzinger D, Bogatyrova O, et al., HPV-related methylation signature predicts survival in oropharyngeal squamous cell carcinomas. J Clin Invest 2013; 123: 2488-501
    • (2013) J Clin Invest , vol.123 , pp. 2488-2501
    • Kostareli, E.1    Holzinger, D.2    Bogatyrova, O.3
  • 17
    • 0038724494 scopus 로고    scopus 로고
    • Consensus clustering: A resampling-based method for class discovery and visualization of gene expression microarray data
    • Monti S, Tamayo P, Mesirov J, et al.,. Consensus clustering: a resampling-based method for class discovery and visualization of gene expression microarray data. Machine Learn 2003; 52: 91-118
    • (2003) Machine Learn , vol.52 , pp. 91-118
    • Monti, S.1    Tamayo, P.2    Mesirov, J.3
  • 18
    • 38949118675 scopus 로고    scopus 로고
    • Inverse relationship between human papillomavirus-16 infection and disruptive p53 gene mutations in squamous cell carcinoma of the head and neck
    • Westra WH, Taube JM, Poeta ML, et al., Inverse relationship between human papillomavirus-16 infection and disruptive p53 gene mutations in squamous cell carcinoma of the head and neck. Clin Cancer Res 2008; 14: 366-9
    • (2008) Clin Cancer Res , vol.14 , pp. 366-369
    • Westra, W.H.1    Taube, J.M.2    Poeta, M.L.3
  • 19
    • 37349055876 scopus 로고    scopus 로고
    • TP53 mutations and survival in squamous-cell carcinoma of the head and neck
    • Poeta ML, Manola J, Goldwasser MA, et al., TP53 mutations and survival in squamous-cell carcinoma of the head and neck. N Engl J Med 2007; 357: 2552-61
    • (2007) N Engl J Med , vol.357 , pp. 2552-2561
    • Poeta, M.L.1    Manola, J.2    Goldwasser, M.A.3
  • 20
    • 33845382806 scopus 로고
    • Nonparametric-estimation from incomplete observations
    • Kaplan EL, Meier P., Nonparametric-estimation from incomplete observations. J Am Stat Assoc 1958; 53: 457-81
    • (1958) J Am Stat Assoc , vol.53 , pp. 457-481
    • Kaplan, E.L.1    Meier, P.2
  • 21
    • 0013886333 scopus 로고
    • Evaluation of survival data and two new rank order statistics arising in its consideration
    • Mantel N., Evaluation of survival data and two new rank order statistics arising in its consideration. Cancer Chemother Rep 1966; 50: 163-70
    • (1966) Cancer Chemother Rep , vol.50 , pp. 163-170
    • Mantel, N.1
  • 22
    • 0000336139 scopus 로고
    • Regression models and life-tables
    • Cox DR., Regression models and life-tables. J R Stat Soc B 1972; 34: 187
    • (1972) J R Stat Soc B , vol.34 , pp. 187
    • Cox, D.R.1
  • 25
    • 32944464047 scopus 로고    scopus 로고
    • Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma
    • Slebos RJ, Yi Y, Ely K, et al., Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma. Clin Cancer Res 2006; 12: 701-9
    • (2006) Clin Cancer Res , vol.12 , pp. 701-709
    • Slebos, R.J.1    Yi, Y.2    Ely, K.3
  • 26
    • 80052177544 scopus 로고    scopus 로고
    • Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1
    • Agrawal N, Frederick MJ, Pickering CR, et al., Exome sequencing of head and neck squamous cell carcinoma reveals inactivating mutations in NOTCH1. Science 2011; 333: 1154-7
    • (2011) Science , vol.333 , pp. 1154-1157
    • Agrawal, N.1    Frederick, M.J.2    Pickering, C.R.3
  • 27
    • 80052158097 scopus 로고    scopus 로고
    • The mutational landscape of head and neck squamous cell carcinoma
    • Stransky N, Egloff AM, Tward AD, et al., The mutational landscape of head and neck squamous cell carcinoma. Science 2011; 333: 1157-60
    • (2011) Science , vol.333 , pp. 1157-1160
    • Stransky, N.1    Egloff, A.M.2    Tward, A.D.3
  • 28
    • 84922394461 scopus 로고    scopus 로고
    • Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss
    • Gross AM, Orosco RK, Shen JP, et al., Multi-tiered genomic analysis of head and neck cancer ties TP53 mutation to 3p loss. Nat Genet 2014; 46: 939-43
    • (2014) Nat Genet , vol.46 , pp. 939-943
    • Gross, A.M.1    Orosco, R.K.2    Shen, J.P.3
  • 29
    • 77954182362 scopus 로고    scopus 로고
    • ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking
    • Wilkerson MD, Hayes DN., ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking. Bioinformatics 2010; 26: 1572-3
    • (2010) Bioinformatics , vol.26 , pp. 1572-1573
    • Wilkerson, M.D.1    Hayes, D.N.2
  • 30
    • 54949118365 scopus 로고    scopus 로고
    • Statistical significance of clustering for high dimension low sample size data
    • Liu Y, Hayes DN, Nobel A, et al., Statistical significance of clustering for high dimension low sample size data. J Am Stat Assoc 2008; 103: 1281-93
    • (2008) J Am Stat Assoc , vol.103 , pp. 1281-1293
    • Liu, Y.1    Hayes, D.N.2    Nobel, A.3
  • 31
    • 77957570386 scopus 로고    scopus 로고
    • Lung squamous cell carcinoma mRNA expression subtypes are reproducible, clinically important, and correspond to normal cell types. Clin
    • Wilkerson MD, Yin X, Hoadley KA, et al., Lung squamous cell carcinoma mRNA expression subtypes are reproducible, clinically important, and correspond to normal cell types. Clin. Cancer Res 2010; 16: 4864-75
    • (2010) Cancer Res , vol.16 , pp. 4864-4875
    • Wilkerson, M.D.1    Yin, X.2    Hoadley, K.A.3
  • 32
    • 84902585334 scopus 로고    scopus 로고
    • A comprehensive evaluation of human papillomavirus positive status and p16INK4a overexpression as a prognostic biomarker in head and neck squamous cell carcinoma
    • Deng Z, Hasegawa M, Aoki K, et al., A comprehensive evaluation of human papillomavirus positive status and p16INK4a overexpression as a prognostic biomarker in head and neck squamous cell carcinoma. Int J Oncol 2014; 45: 67-76
    • (2014) Int J Oncol , vol.45 , pp. 67-76
    • Deng, Z.1    Hasegawa, M.2    Aoki, K.3
  • 33
    • 84920995120 scopus 로고    scopus 로고
    • P16(INK4a)/Ki-67 co-expression specifically identifies transformed cells in the head and neck region
    • Prigge ES, Toth C, Dyckhoff G, et al., p16(INK4a)/Ki-67 co-expression specifically identifies transformed cells in the head and neck region. Int J Cancer 2015; 136: 1589-99
    • (2015) Int J Cancer , vol.136 , pp. 1589-1599
    • Prigge, E.S.1    Toth, C.2    Dyckhoff, G.3
  • 34
    • 84879936681 scopus 로고    scopus 로고
    • Identification of oropharyngeal squamous cell carcinomas with active HPV16 involvement by immunohistochemical analysis of the retinoblastoma protein pathway
    • Holzinger D, Flechtenmacher C, Henfling N, et al., Identification of oropharyngeal squamous cell carcinomas with active HPV16 involvement by immunohistochemical analysis of the retinoblastoma protein pathway. Int J Cancer 2013; 133: 1389-99
    • (2013) Int J Cancer , vol.133 , pp. 1389-1399
    • Holzinger, D.1    Flechtenmacher, C.2    Henfling, N.3
  • 35
    • 79957879059 scopus 로고    scopus 로고
    • Prognostic significance of truncating TP53 mutations in head and neck squamous cell carcinoma
    • Lindenbergh-van der Plas M, Brakenhoff RH, Kuik DJ, et al., Prognostic significance of truncating TP53 mutations in head and neck squamous cell carcinoma. Clin Cancer Res 2011; 17: 3733-41
    • (2011) Clin Cancer Res , vol.17 , pp. 3733-3741
    • Lindenbergh-Van Der Plas, M.1    Brakenhoff, R.H.2    Kuik, D.J.3
  • 36
    • 84891876062 scopus 로고    scopus 로고
    • Common oncogenic mutations are infrequent in oral squamous cell carcinoma of Asian origin
    • Zanaruddin SN, Yee PS, Hor SY, et al., Common oncogenic mutations are infrequent in oral squamous cell carcinoma of Asian origin. PLoS One 2013; 8: e80229
    • (2013) PLoS One , vol.8 , pp. e80229
    • Zanaruddin, S.N.1    Yee, P.S.2    Hor, S.Y.3
  • 37
    • 80455162370 scopus 로고    scopus 로고
    • Disruptive TP53 mutation is associated with aggressive disease characteristics in an orthotopic murine model of oral tongue cancer
    • Sano D, Xie TX, Ow TJ, et al., Disruptive TP53 mutation is associated with aggressive disease characteristics in an orthotopic murine model of oral tongue cancer. Clin Cancer Res 2011; 17: 6658-70
    • (2011) Clin Cancer Res , vol.17 , pp. 6658-6670
    • Sano, D.1    Xie, T.X.2    Ow, T.J.3
  • 38
    • 34447128827 scopus 로고    scopus 로고
    • Deletions of N33, STK11 and TP53 are involved in the development of lymph node metastasis in larynx and pharynx carcinomas
    • Guervos MA, Marcos CA, Hermsen M, et al., Deletions of N33, STK11 and TP53 are involved in the development of lymph node metastasis in larynx and pharynx carcinomas. Cell Oncol 2007; 29: 327-34
    • (2007) Cell Oncol , vol.29 , pp. 327-334
    • Guervos, M.A.1    Marcos, C.A.2    Hermsen, M.3
  • 39
    • 84923172078 scopus 로고    scopus 로고
    • Integrative analysis of head and neck cancer identifies two biologically distinct HPV and three non-HPV subtypes
    • Keck MK, Zuo Z, Khattri A, et al., Integrative analysis of head and neck cancer identifies two biologically distinct HPV and three non-HPV subtypes. Clin Cancer Res 2015; 21: 870-81
    • (2015) Clin Cancer Res , vol.21 , pp. 870-881
    • Keck, M.K.1    Zuo, Z.2    Khattri, A.3
  • 40
    • 39149114758 scopus 로고    scopus 로고
    • Type-dependent integration frequency of human papillomavirus genomes in cervical lesions
    • Vinokurova S, Wentzensen N, Kraus I, et al., Type-dependent integration frequency of human papillomavirus genomes in cervical lesions. Cancer Res 2008; 68: 307-13
    • (2008) Cancer Res , vol.68 , pp. 307-313
    • Vinokurova, S.1    Wentzensen, N.2    Kraus, I.3
  • 41
    • 59549085974 scopus 로고    scopus 로고
    • Transcriptional regulation of the papillomavirus oncogenes by cellular and viral transcription factors in cervical carcinoma
    • Thierry F., Transcriptional regulation of the papillomavirus oncogenes by cellular and viral transcription factors in cervical carcinoma. Virology 2009; 384: 375-9
    • (2009) Virology , vol.384 , pp. 375-379
    • Thierry, F.1
  • 42
    • 0037122896 scopus 로고    scopus 로고
    • Characterization of viral-cellular fusion transcripts in a large series of HPV16 and 18 positive anogenital lesions
    • Wentzensen N, Ridder R, Klaes R, et al., Characterization of viral-cellular fusion transcripts in a large series of HPV16 and 18 positive anogenital lesions. Oncogene 2002; 21: 419-26
    • (2002) Oncogene , vol.21 , pp. 419-426
    • Wentzensen, N.1    Ridder, R.2    Klaes, R.3
  • 43
    • 80052531865 scopus 로고    scopus 로고
    • Differential methylation of the HPV 16 upstream regulatory region during epithelial differentiation and neoplastic transformation
    • Vinokurova S, von Knebel Doeberitz M., Differential methylation of the HPV 16 upstream regulatory region during epithelial differentiation and neoplastic transformation. PLoS One 2011; 6: e24451
    • (2011) PLoS One , vol.6 , pp. e24451
    • Vinokurova, S.1    Von Knebel Doeberitz, M.2
  • 44
    • 84874110812 scopus 로고    scopus 로고
    • Differential methylation of E2 binding sites in episomal and integrated HPV 16 genomes in preinvasive and invasive cervical lesions
    • Chaiwongkot A, Vinokurova S, Pientong C, et al., Differential methylation of E2 binding sites in episomal and integrated HPV 16 genomes in preinvasive and invasive cervical lesions. Int J Cancer 2013; 132: 2087-94
    • (2013) Int J Cancer , vol.132 , pp. 2087-2094
    • Chaiwongkot, A.1    Vinokurova, S.2    Pientong, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.