Genetic Diversity, Historic Population Size, and Population Structure in 2 North American Tree Bats

Journal of Mammalogy

Volumn 96, Issue 5, 2015, Pages 972-980

  Korstian, Jennifer M ^a   Hale, Amanda M ^a   Williams, Dean A ^a  

^a TEXAS CHRISTIAN UNIVERSITY   (United States)

Author keywords

effective population size; Lasiurus borealis; Lasiurus cinereus; microsatellites; mitochondrial DNA; population genetics; wind energy

Indexed keywords

BAT; GENETIC DIFFERENTIATION; HETEROZYGOSITY; MITOCHONDRIAL DNA; MORTALITY; POPULATION DECLINE; POPULATION GENETICS; POPULATION SIZE; POPULATION STRUCTURE; RANGE EXPANSION; WIND FARM; WIND POWER;

NORTH AMERICA;

ARDOPS NICHOLLSI; LASIURUS BOREALIS; LASIURUS CINEREUS;

EID: 84943648389     PISSN: 00222372     EISSN: 15451542     Source Type: Journal    
DOI: 10.1093/jmammal/gyv101     Document Type: Article

References (68)

1. Allendorf, F. W., P. A. Hohenlohe, and G. Luikart. 2010. Genomics and the future of conservation genetics. Nature Reviews Genetics 11:697-709.
2. Altringham, J. D. 2011. Bats. Oxford University Press, New York.
3. Ammerman, L. K., C. L. Hice, and D. J. Schmidly. 2012. Bats of Texas. Texas A&M University Press, College Station.
4. Arnett, E. B., et al. 2008. Patterns of bat fatalities at wind energy facilities in North America. Journal of Wildlife Management 72:61-78.
5. Arnett, E. B., and E. F. Baerwald. 2013. Impacts of wind energy development on bats: implications for conservation. Pp. 435-456 in Bat ecology and conservation (R. A. Adams and S. C. Pedersen, eds.). Springer, New York.
6. Avise, J. C. 2000. Phylogeography: the history and formation of species. Harvard University Press, Cambridge, Massachusetts.
7. Baerwald, E. F., and R. M. R. Barclay. 2009. Geographic variation in activity and fatality of migratory bats at wind energy facilities. Journal of Mammalogy 90:1341-1349.
8. Bennett, V. J., and A. M. Hale. 2014. Red aviation lights on wind turbines do not increase bat-turbine collisions. Animal Conservation 17:354-358.
9. Busch, J. D., P. M. Waser, and A. DeWoody. 2007. Recent demographic bottlenecks are not accompanied by a genetic signature in banner-tailed kangaroo rats (Dipodomys spectabilis). Molecular Ecology 16:2450-2462.
10. Carter, T. C., M. A. Menzel, and D. A. Saugey. 2003. Population trends of solitary foliage roosting bats. Pp. 41-47 in Monitoring trends in bat populations of the United States and Territories: problems and prospects (T. J. O'Shea, M. A. Bogan, and L. E. Ellison, eds.). U. S. Geological Survey, Biological Resources Discipline, Information and Technology Report, Fort Collins, Colorado. USGS, BRD/ITR-2003-003.
11. Clement, M., D. Posada, and K. A. Crandall. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology 9:1657-1659.
12. Cornuet, J. M., and G. Luikart. 1996. Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics 144:2001-2014.
13. Cryan, P. M. 2003. Seasonal distribution of migratory tree bats (Lasiurus and Lasionycteris) in North America. Journal of Mammalogy 84:579-93.
14. Cryan, P. M., and J. P. Veilleux. 2007. Migration and the use of autumn, winter, and spring roosts by tree bats. Pp. 153-175 in Bats in forests: conservation and management. (M. J. Lacki, J. P. Hayes, and A. Kurta, eds.) Johns Hopkins University Press, Baltimore, Maryland.
15. Cryan, P. M., et al. 2012. Evidence of late-summer mating readiness and early sexual maturation in migratory tree-roosting bats found dead at wind turbines. PLoS One 7:e47586.
16. Cryan, P. M., C. A. Stricker, and M. B. Wunder. 2014. Continental-scale, seasonal movements of a heterothermic migratory tree bat. Ecological Applications 24:602-616.
17. Di Rienzo, A., A. C. Paterson, J. C. Garza, A. M. Valdes, M. Slatkin, and N. B. Freimer. 1994. Mutational processes of simple-sequence repeat loci in human populations. Proceedings of the National Academy of Sciences 91:3166-3170.
18. Dixon, M. D. 2011. Post-Pleistocene range expansion of the recently imperiled eastern little brown bat (Myotis lucifugus lucifugus) from a single southern refugium. Ecology and Evolution 1:191-200.
19. Do, C., R. S. Waples, D. Peel, G. M. Macbeth, B. J. Tillet, and J. R. Ovenden. 2014. NeEstimator V2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data. Molecular Ecology Resources 14:209-214.
20. Ellegren, H. 2004. Microsatellites: simple sequences with complex evolution. Nature Review Genetics 5:435-445.
21. Excoffier, L., and H. E. L. Lischer. 2010. Arlequin suite ver 3. 5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564-567.
22. Folmer, O., M. Black, W. Hoeh, R. Lutz, and R. Vrijenhoek. 1994. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3:294-299.
23. Fraser, E. E., L. P. McGuire, J. L. Eger, F. J. Longstaffe, and M. B. Fenton. 2012. Evidence of latitudinal migration in tri-colored bats, Perimyotis subflavus. PLoS One 7:e31419.
24. Fu, Y. X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 155:2011-2014.
25. Garza, J. C., and E. G. Williamson. 2001. Detection of reduction in population size using data from microsatellite loci. Molecular Ecology 10:305-318.
26. Goudet, J. 1995. FSTAT (Version 1. 2): a computer program to calculate F-statistics. Journal of Heredity 86:485-486.
27. Harpending, H. C., S. T. Sherry, A. R. Rogers, and M. Stoneking. 1993. The genetic structure of ancient human populations. Current Anthropology 34:483-496.
28. Hewitt, G. 2000. The genetic legacy of the Quaternary ice ages. Nature 405:907-913.
29. Howell, A. B. 1908. Notes on the diurnal migrations of bats. Proceedings of the Biological Society of Washington 21:35-38.
30. Jarne, P., and P. J. L. Lagoda. 1996. Microsatellites, from molecules to populations and back. Trends in Ecology and Evolution 11:424-429.
31. Kimura, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution 16:111-120.
32. Kolleck J., M. Yang, D. Zinner, and C. Roos. 2013. Genetic diversity in endangered Guizhou snub-nosed monkeys (Rhinopithecus brelichi): contrasting results from microsatellite and mitochondrial DNA data. PLoS One 8: e73647.
33. Korstian, J. M., A. M. Hale, V. J. Bennett, and D. A. Williams. 2013. Advances in sex determination in bats and its utility in windwildlife studies. Molecular Ecology Resources 13:776-780.
34. Korstian, J. M., A. M. Hale, and D. A. Williams. 2014. Development and characterization of microsatellite loci for eastern red and hoary bats (Lasiurus borealis and L. cinereus). Conservation Genetics Resources 6:605-607.
35. Kunz, T. H., et al. 2007. Ecological impacts of wind energy development on bats: questions, research needs, and hypotheses. Frontiers in Ecology and the Environment 5:315-324.
36. Larkin, M. A., et al. 2007. Clustal W and Clustal X version 2. 0. Bioinformatics 23:2947-2948.
37. Lehnert, L. S., S. Kramer-Schadt, S. Schönborn, O. Lindecke, I. Niermann, and C. C. Voigt. 2014. Wind farm facilities in Germany kill noctule bats from near and far. PLoS One 9: e103106.
38. Librado, P., and J. Rozas. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
39. Matschiner, M., and W. Salzburger. 2009. TANDEM: integrating automated allele binning into genetics and genomics workflows. Bioinformatics 25:1982-1983.
40. Mearns, E. A. 1898. A study of the vertebrate fauna of the Hudson highlands, with observations of the Mollusca, Crustacea, Lepidoptera, and the flora of the region. Bulletin of the American Museum of Natural History 10:303-352.
41. Morales, J. C., and J. W. Bickham. 1995. Molecular systematics of the genus Lasiurus (Chiroptera: Vespertilionidae) based on restriction-site maps of the mitochondrial ribosomal genes. Journal of Mammalogy 76:730-749.
42. Moussy, C., D. J. Hosken, F. Mathews, G. C. Smith, J. N. Aegerter, and S. Bearhop. 2013. Migration and dispersal patterns of bats and their influence on genetic structure. Mammal Review 43:183-195.
43. Nabholz, B., S. Glémin, and N. Galtier. 2008. Strong variations of mitochondrial mutation rate across mammals-the longevity hypothesis. Molecular Biology and Evolution 25:120-130.
44. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
45. Palstra, F. P., and D. F. Ruzzante. 2008. Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Molecular Ecology 17:3428-3447.
46. Peakall, R., and P. E. Smouse. 2006. Genalex 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 6:288-295.
47. Peck, D. R., and B. C. Congdon. 2004. Reconciling historical processes and population structure in the sooty tern Sterna fuscata. Journal of Avian Biology 35: 327-335.
48. Peery, M. Z., et al. 2012. Reliability of genetic bottleneck tests for detecting recent population declines. Molecular Ecology 21:3403-3418.
49. Piry, S., G. Luikart, and J-M. Cornuet. 1999. BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity 90:502-503.
50. Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of structure using multilocus genotype data. Genetics 155: 945-959.
51. Racey, P. A., and A. C. Entwistle. 2003. Conservation ecology of bats. Pp. 680-743 in Bat ecology (T. H. Kunz and M. B. Fenton, eds.). University of Chicago Press, Chicago, Illinois.
52. Ramos-Onsisns, S. E., and J. Rozas. 2002. Statistical properties of new neutrality tests against population growth. Molecular Biology and Evolution 23:1642-1642.
53. Rogers, A. R. 1995. Genetic evidence of a Pleistocene population explosion. Evolution 49:608-615.
54. Rousset, F. 2008. GENEPOP '007: a complete re-implementation of the GENEPOP Software for Windows and Linux. Molecular Ecology Resources 8:103-106.
55. Russell, D. A., F. J. Rich, V. Schneider, and J. Lynch-Stieglitz. 2009. A warm thermal enclave in the late Pleistocene of the Southeastern United States. Biological Review 84:173-202.
56. Schenekar, T., and S. Weiss. 2011a. High rate of calculation errors in mismatch distribution of analysis results in numerous false inferences of biological importance. Heredity 107:511-512.
57. Schenekar, T., and S. Weiss. 2011b. Mismatch calculator. http:// www. uni-graz. at/zoowww/mismatchcalc/index. php. Accessed 16 August 2014.
58. Schorr, R. A., L. E. Ellison, and P. M. Lukacs. 2014. Estimating sample size for landscape-scale mark-recapture studies of North American migratory tree bats. Acta Chiropterologica 16:231-239.
59. Schwartz, M. K., G. Luikart, and R. S. Waples. 2006. Genetic monitoring as a promising tool for conservation and management. Trends in Ecology and Evolution 22:25-33.
60. Shump, K. A., Jr., and A. U. Shump. 1982a. Lasiurus borealis. Mammalian Species 183:1-6.
61. Shump, K. A., Jr., and A. U. Shump. 1982b. Lasiurus cinereus. Mammalian Species 185:1-5.
62. Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595.
63. Tajima, F. 1993. Measurement of DNA polymorphism. Pp. 37-59 in Mechanisms of molecular evolution (N. Takahata and A. G. Clark, eds). Sinauer Associates Inc., Sunderland, Massachusetts.
64. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei, and S. Kumar. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 10:2731-2739.
65. Von Haeseler, A., A. Sajantila, and S. Pääbo. 1996. The genetical archaeology of the human genome. Nature Genetics 14:135-140.
66. Waples, R. S., and C. Do. 2010. Linkage disequilibrium estimates of contemporary Ne using highly variable genetic markers: a largely untapped resource for applied conservation and evolution. Evolutionary Applications 3:244-262.
67. Whitaker, J. O., Jr., V. Brack, and J. B. Cope. 2006. Are bats in Indiana declining? Proceedings of the Indiana Academy of Science 111:95-96.
68. Winhold, L., A. Kurta, and R. Foster. 2008. Long-term change in an assemblage of North American bats: are eastern red bats declining? Acta Chiropterologica 10:359-366.