Phylogenetic diversity of Amazonian tree communities

Diversity and Distributions

Volumn 21, Issue 11, 2015, Pages 1295-1307

  Honorio Coronado, Eurídice N ^a,b   Dexter, Kyle G ^c,d   Pennington, R Toby ^d   Chave, Jérôme ^e   Lewis, Simon L ^a,f   Alexiades, Miguel N ^g   Alvarez, Esteban ^h   Alves de Oliveira, Atila ⁱ   Amaral, Iêda L ⁱ   Araujo Murakami, Alejandro ^j   Arets, Eric J M M ^k   Aymard, Gerardo A ^l   Baraloto, Christopher ^m,n   Bonal, Damien ^o   Brienen, Roel ^a   Cerón, Carlos ^p   Cornejo Valverde, Fernando ^q   Di Fiore, Anthony ^r   Farfan Rios, William ^s   Feldpausch, Ted R ^t   Higuchi, Niro ⁱ   Huamantupa Chuquimaco, Isau ^u   Laurance, Susan G ^v   Laurance, William F ^v   López Gonzalez, Gabriela ^a   Marimon, Beatriz S ^w   Marimon Junior, Ben Hur ^w   Monteagudo Mendoza, Abel ^x   Neill, David ^y   Palacios Cuenca, Walter ^z   Peñuela Mora, Maria Cristina ^aa   Pitman, Nigel C A ^ab,ac   Prieto, Adriana ^ad   Quesada, Carlos A ⁱ   Ramirez Angulo, Hirma ^ae   Rudas, Agustín ^ad   Ruschel, Ademir R ^af   Salinas Revilla, Norma ^u,ag   Salomão, Rafael P ^ah   Segalin de Andrade, Ana ⁱ   Silman, Miles R ^s   Spironello, Wilson ⁱ   ter Steege, Hans ^ai,aj   Terborgh, John ^ab   Toledo, Marisol ^ak   Valenzuela Gamarra, Luis ^x   Vieira, Ima C G ^ah   Vilanova Torre, Emilio ^ae   Vos, Vincent ^al   Phillips, Oliver L ^a   more..

^a UNIVERSITY OF LEEDS   (United Kingdom)

^b INSTITUTO DE INVESTIGACIONES DE LA AMAZONÍA PERUANA   (Peru)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

^d ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

^e UNIVERSITÉ PAUL SABATIER   (France)

^f UNIVERSITY COLLEGE LONDON   (United Kingdom)

^g UNIVERSITY OF KENT   (United Kingdom)

^h Laboratorio de Investigacion en Servicios Ecosistémicos y Cambio Climático   (Colombia)

ⁱ INSTITUTO NACIONAL DE PESQUISAS DA AMAZÔNIA   (Brazil)

^j Museo de Historia Natural Noel Kempff Mercado   (Bolivia)

^k WAGENINGEN UNIVERSITY   (Netherlands)

^l Herbario (PORT)   (Venezuela)

^m CEMAGREF   (France)

ⁿ FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^o UNIVERSITÉ DE LORRAINE   (France)

^p UNIVERSIDAD CENTRAL DEL ECUADOR   (Ecuador)

^q University of Texas ^*  (Peru)

^r UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^s WAKE FOREST UNIVERSITY   (United States)

^t UNIVERSITY OF EXETER   (United Kingdom)

^u UNIVERSIDAD NACIONAL DE SAN ANTONIO ABAD DEL CUSCO   (Peru)

^v JAMES COOK UNIVERSITY   (Australia)

^w UNIVERSIDADE DO ESTADO DE MATO GROSSO   (Brazil)

^x Herbario Selva Central Oxapampa HOXA de la estación Biológica del Jardín Botánico de Missouri   (Peru)

^y UNIVERSIDAD ESTATAL AMAZÓNICA   (Ecuador)

^z UNIVERSIDAD TÉCNICA DEL NORTE   (Ecuador)

^aa UNIVERSIDAD REGIONAL AMAZÓNICA IKIAM   (Ecuador)

^ab DUKE UNIVERSITY   (United States)

^ac FIELD MUSEUM OF NATURAL HISTORY   (United States)

^ad UNIVERSIDAD NACIONAL DE COLOMBIA   (Colombia)

^ae FACULTAD DE CIENCIAS   (Venezuela)

^af EMBRAPA CERRADOS   (Brazil)

^ag UNIVERSITY OF OXFORD   (United Kingdom)

^ah MUSEU PARAENSE EMÍLIO GOELDI   (Brazil)

^ai NATURALIS BIODIVERSITY CENTER   (Netherlands)

^aj UTRECHT UNIVERSITY   (Netherlands)

^ak Centro de Investigación Económica del Colegio de Economista   (Bolivia)

^al Centro de Investigación de Recursos Aquáticos CIRA   (Bolivia)

more..

Author keywords

Amazon basin; Eudicots; Magnoliids; Monocots; Phylogenetic diversity; Species richness

Indexed keywords

DICOTYLEDON; MONOCOTYLEDON; PHYLOGENETICS; PLANT COMMUNITY; SPECIES RICHNESS; TAXONOMY;

AMAZON BASIN;

LILIOPSIDA; MAGNOLIIDS; MAGNOLIOPHYTA;

EID: 84943586342     PISSN: 13669516     EISSN: 14724642     Source Type: Journal    
DOI: 10.1111/ddi.12357     Document Type: Article

References (47)

1. Anacker, B.L. & Harrison, S.P. (2012) Historical and ecological controls on phylogenetic diversity in Californian plant communities. The American Naturalist, 180, 257-269.
2. Baker, T.R., Pennington, R.T., Magallon, S. et al. (2014) Fast demographic traits promote high diversification rates of Amazonian trees. Ecology Letters, 17, 527-536.
3. Bremer, B., Bremer, K., Chase, M.W., Fay, M.F., Reveal, J.L., Soltis, D.E., Soltis, P.S., Stevens, P.F., Anderberg, A.A., Moore, M.J., Olmstead, R.G., Rudall, P.J., Sytsma, K.J., Tank, D.C., Wurdack, K., Xiang, J.Q.Y., Zmarzty, S. & Angiosperm Phylogeny, G. (2009) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III. Botanical Journal of the Linnean Society, 161, 105-121.
4. Cadotte, M.W., Jonathan Davies, T., Regetz, J., Kembel, S.W., Cleland, E. & Oakley, T.H. (2010) Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history. Ecology Letters, 13, 96-105.
5. Cadotte, M.W., Dinnage, R. & Tilman, D. (2012) Phylogenetic diversity promotes ecosystem stability. Ecology, 93, S223-S233.
6. Chave, J., Chust, G. & Thebaud, C. (2007) The importance of phylogenetic structure in biodiversity studies. Scaling biodioversity (ed.by D. Storch, P.L. Marquet and J.H. Brown ), pp. 150-167. Cambridge University Press, Cambridge, UK.
7. Erkens, R.H.J., Chatrou, L.W., Maas, J.W., van der Niet, T. & Savolainen, V. (2007) A rapid diversification of rainforest trees (Guatteria; Annonaceae) following dispersal from Central into South America. Molecular Phylogenetics and Evolution, 44, 399-411.
8. Faith, D.P. (1992) Conservation evaluation and phylogenetic diversity. Biological Conservation, 61, 1-10.
9. Faith, D.P., Reid, C.A.M. & Hunter, J. (2004) Integrating phylogenetic diversity, complementarity, and endemism for conservation assessment. Conservation Biology, 18, 255-261.
10. Fine, P.V.A. & Kembel, S.W. (2011) Phylogenetic community structure and phylogenetic turnover across space and edaphic gradients in western Amazonian tree communities. Ecography, 34, 552-565.
11. Fine, P.V.A., Mesones, I. & Coley, P.D. (2004) Herbivores promote habitat specialization by trees in Amazonian forests. Science, 305, 663-665.
12. Fine, P.V.A., García-Villacorta, R., Pitman, N.C.A., Mesones, I. & Kembel, S.W. (2010) A floristic study of the white-sand forests of Peru. Annals of the Missouri Botanical Garden, 97, 283-305.
13. Forest, F., Grenyer, R., Rouget, M., Davies, T.J., Cowling, R.M., Faith, D.P., Balmford, A., Manning, J.C., Proches, S., van der Bank, M., Reeves, G., Hedderson, T.A.J. & Savolainen, V. (2007) Preserving the evolutionary potential of floras in biodiversity hotspots. Nature, 445, 757-760.
14. Gastauer, M. & Meira-Neto, J.A.A. (2013) Avoiding inaccuracies in tree calibration and phylogenetic community analysis using Phylocom 4.2. Ecological Informatics, 15, 85-90.
15. Gentry, A.H. (1982) Neotropical floristic diversity: phytogeographical connections between Central and South-America, Pleistocene climatic fluctuations, or an accident of the Andean orogeny. Annals of the Missouri Botanical Garden, 69, 557-593.
16. Gentry, A.H. (1988) Tree species richness of upper Amazonian forests. Proceedings of the National Academy of Sciences USA, 85, 156-159.
17. Gonzalez, M.A., Roger, A., Courtois, E.A., Jabot, F., Norden, N., Paine, C.E.T., Baraloto, C., Thébaud, C. & Chave, J. (2010) Shifts in species and phylogenetic diversity between sapling and tree communities indicate negative density dependence in a lowland rain forest. Journal of Ecology, 98, 137-146.
18. Helmus, M.R., Bland, T.J., Williams, C.K. & Ives, A.R. (2007) Phylogenetic measures of biodiversity. The American Naturalist, 169, E68-E83.
19. Hoorn, C., Wesselingh, F.P., ter Steege, H., Bermudez, M.A., Mora, A., Sevink, J., Sanmartín, I., Sanchez-Meseguer, A., Anderson, C.L., Figueiredo, J.P., Jaramillo, C., Riff, D., Negri, F.R., Hooghiemstra, H., Lundberg, J., Stadler, T., Särkinen, T. & Antonelli, A. (2010) Amazonia through time: Andean uplift, climate change, landscape evolution, and biodiversity. Science, 330, 927-931.
20. Kembel, S.W. & Hubbell, S.P. (2006) The phylogenetic structure of a Neotropical forest tree community. Ecology, 87, S86-S99.
21. Kembel, S.W., Cowan, P.D., Helmus, M.R., Cornwell, W.K., Morlon, H., Ackerly, D.D., Blomberg, S.P. & Webb, C.O. (2010) Picante: R tools for integrating phylogenies and ecology. Bioinformatics, 26, 1463-1464.
22. Malhi, Y., Phillips, O.L., Lloyd, J. et al. (2002) An international network to monitor the structure, composition and dynamics of Amazonian forests (RAINFOR). Journal of Vegetation Science, 13, 439-450.
23. Marimon, B.S., Marimon-Junior, B.H., Feldpausch, T.R., Oliveira-Santos, C., Mews, H.A., Lopez-Gonzalez, G., Lloyd, J., Franczak, D.D., de Oliveira, E.A., Maracahipes, L., Miguel, A., Lenza, E. & Phillips, O.L. (2013) Disequilibrium and hyperdynamic tree turnover at the forest-cerrado transition zone in southern Amazonia. Plant Ecology & Diversity, 7, 281-292.
24. Miller, E.T., Zanne, A.E. & Ricklefs, R.E. (2013) Niche conservatism constrains Australian honeyeater assemblages in stressful environments. Ecology Letters, 16, 1186-1194.
25. Myers, N., Mittermeier, R.A., Mittermeier, C.G., da Fonseca, G.A.B. & Kent, J. (2000) Biodiversity hotspots for conservation priorities. Nature, 403, 853-858.
26. Phillips, O. & Miller, J. (2002) Global patterns of plant diversity: Alwyn H. Gentry's forest transect data set. Missouri Botanical Garden Press, St. Louis, MO.
27. Polasky, S., Csuti, B., Vossler, C.A. & Meyers, S.M. (2001) A comparison of taxonomic distinctness versus richness as criteria for setting conservation priorities for North American birds. Biological Conservation, 97, 99-105.
28. Qian, H., Zhang, Y., Zhang, J. & Wang, X. (2013) Latitudinal gradients in phylogenetic relatedness of angiosperm trees in North America. Global Ecology and Biogeography, 22, 1183-1191.
29. Quesada, C.A., Lloyd, J., Anderson, L.O., Fyllas, N.M., Schwarz, M. & Czimczik, C.I. (2011) Soils of Amazonia with particular reference to the RAINFOR sites. Biogeosciences, 8, 1415-1440.
30. Quesada, C.A., Phillips, O.L., Schwarz, M. et al. (2012) Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate. Biogeosciences, 9, 2203-2246.
31. Richardson, J.E., Pennington, R.T., Pennington, T.D. & Hollingsworth, P.M. (2001) Rapid diversification of a species-rich genus of Neotropical rain forest trees. Science, 293, 2242-2245.
32. Rodrigues, A.S.L. & Gaston, K.J. (2002) Maximising phylogenetic diversity in the selection of networks of conservation areas. Biological Conservation, 105, 103-111.
33. Sechrest, W., Brooks, T.M., da Fonseca, G.A.B., Konstant, W.R., Mittermeier, R.A., Purvis, A., Rylands, A.B. & Gittleman, J.L. (2002) Hotspots and the conservation of evolutionary history. Proceedings of the National Academy of Sciences USA, 99, 2067-2071.
34. Simon, M.F. & Pennington, R.T. (2012) Evidence for adaptation to fire regimes in the tropical savannas of the Brazilian cerrado. International Journal of Plant Sciences, 173, 711-723.
35. Simon, M.F., Grether, R., de Queiroz, L.P., Skema, C., Pennington, R.T. & Hughes, C.E. (2009) Recent assembly of the Cerrado, a neotropical plant diversity hotspot, by in situ evolution of adaptations to fire. Proceedings of the National Academy of Sciences USA, 106, 20359-20364.
36. Sombroek, W. (2001) Spatial and temporal patterns of Amazon rainfall: consequences for the planning of agricultural occupation and the protection of primary forests. Ambio, 30, 388-396.
37. ter Steege, H., Pitman, N., Sabatier, D. et al. (2003) A spatial model of tree α-diversity and tree density for the Amazon. Biodiversity and Conservation, 12, 2255-2277.
38. ter Steege, H., Pitman, N.C.A., Sabatier, D. et al. (2013) Hyperdominance in the Amazonian tree flora. Science, 342, 1243092.
39. Swenson, N.G. (2009) Phylogenetic resolution and quantifying the phylogenetic diversity and dispersion of communities. PLoS ONE, 4, e4390.
40. Vane-Wright, R.I., Humphries, C.J. & Williams, P.H. (1991) What to protect?-Systematics and the agony of choice. Biological Conservation, 55, 235-254.
41. Vitousek, P.M. & Sanford, R. (1986) Nutrient cycling in moist tropical forest. Annual Review of Ecology and Systematics, 17, 137-167.
42. Webb, C.O. (2000) Exploring the phylogenetic structure of ecological communities: an example for rain forest trees. The American Naturalist, 156, 145-155.
43. Webb, C.O. & Donoghue, M.J. (2005) Phylomatic: tree assembly for applied phylogenetics. Molecular Ecology Notes, 5, 181-183.
44. Webb, C.O., Ackerly, D.D., McPeek, M.A. & Donoghue, M.J. (2002) Phylogenies and community ecology. Annual Review of Ecology and Systematics, 33, 475-505.
45. Webb, C.O., Ackerly, D.D. & Kembel, S.W. (2008) Phylocom: software for the analysis of phylogenetic community structure and trait evolution. Bioinformatics, 24, 2098-2100.
46. Wikström, N., Savolainen, V. & Chase, M.W. (2001) Evolution of the angiosperms: calibrating the family tree. Proceedings of the Royal Society B: Biological Sciences, 268, 2211-2220.
47. Winter, M., Devictor, V. & Schweiger, O. (2013) Phylogenetic diversity and nature conservation: where are we? Trends in Ecology and Evolution, 28, 199-204.