Proteomic analysis of salt-stress responsive proteins in roots of tomato (Lycopersicon esculentum L.) plants towards silicon efficiency

Plant Growth Regulation

Volumn 77, Issue 2, 2015, Pages 133-146

  Muneer, Sowbiya ^a   Jeong, Byoung Ryong ^a  

^a Gyeongsang National University   (South Korea)

Author keywords

Antioxidant genes; DREB genes; Lsi genes; Lycopersicon esculentum; Proteomics; Salt stress; Silicon

Indexed keywords

EID: 84943361115     PISSN: 01676903     EISSN: 15735087     Source Type: Journal    
DOI: 10.1007/s10725-015-0045-y     Document Type: Article

References (56)

1. Aghaei K, Komatsu S (2013) Crop and medicinal plants proteomics in response to salt stress. Front Plant Sci 4:1–9
2. Ahsan N, Renault J, Komatsu S (2009) Recent developments in the application of proteomics to the analysis of plant responses to heavy metals. Proteomics 9:2602–2621
3. Bradford MM (1976) A rapid and sensitive method for quantification of microgram quantities of proteins utilizing the principal of protein-dye binding. Anal Biochem 72:1–2
4. Bhushan D, Pandey A, Choudhary M, Datta A, Chakraborty S, Chakraborty N (2006) Comparative proteomic analysis of differentially expressed proteins in Chickpea extracellular matrix during dehydration stress. Mol Cell Proteomics 6:1868–1884
5. Blumwald E (2000) Sodium transport and salt tolerance in plants. Curr Opin Cell Biol 12(4):431–434
6. Chartzoulakis K, Klapaki G (2000) Response of two greenhouse pepper hybrids to NaCl salinity during different growth stages. Sci Hort 86:247–260
7. Datnoff LE, Deren CW, Snyder GH (1997) Silicon fertilization for disease management of rice in Florida. Crop Prot 16:525–531
8. Dhindsa RH, Plumb-Dhindsa P, Thorpe TA (1981) Leaf senescence correlated with increased level of membrane permeability, lipid peroxidation and decreased level of SOD and CAT. J Exp Bot 32:93–101
9. Farooq M, Wahid A, Kobayashi N, Fujita D, Basra SMA (2009) Plant drought stress: effects, mechanisms and management. Agron Sustain Dev 29:185–212
10. Faurobert M, Pelpoir E, Chaïb J (2006) Phenol extraction of proteins for proteomic studies of recalcitrant plant tissues. In: Zivy M (ed) Plant proteomics. Methods and protocols, vol 355. Humana Press, Totowa, pp 9–14
11. Fauteux F, Chain F, Belzile F, Menzies JG, Belanger RR (2006) The protective role of silicon in the Arabidopsis–powdery mildew pathosystem. Proc Natl Acad Sci USA 103:17554–17559
12. Gao X, Zou C, Wang L, Zhang F (2006) Silicon decreases transpiration rate and conductance from stomata of maize plants. J Plant Nutr 29:1637–1647
13. Gong H, Zhu X, Chen K, Wang S, Zhang C (2005) Silicon alleviates oxidative damage of wheat plants in pots under drought. Plant Sci 169:313–321
14. Gong HJ, Randall DP, Flowers TJ (2006) Silicon deposition in the root reduces sodium uptake in rice (Oryza sativa L.) seedlings by reducing bypass flow. Plant Cell Environ 29:1970–1979
15. Guo G, Ge P, Ma C, Li X, Lv D, Wang S, Ma W, Yan Y (2012) Comparative proteomic analysis of salt response proteins in seedling roots of two wheat varieties. J Proteomics 75(6):1867–1885
16. Heath RL, Packer L (1968) Photoperoxidation in isolated chloroplast I. Kinetics and stoichiometry of fatty acid Peroxidation. Arch Biochem Biophys 125:189–198
17. Hubbard KE, Nishimura N, Hitomi K, Getzoff ED, Schroeder JI (2010) Early abscisic acid signal transduction mechanisms: newly discovered components and newly emerging questions. Gene Dev 24:1695–1708
18. Huerta-Ocampo JA, Barrera-Pacheco A, Mendoza-Hernández CS, Espitia-Rangel E, Mock HP, de la Rosa APB (2014) Salt stress-induced alterations in the root proteome of Amaranthus cruentus L. J Proteome Res. doi:10.1021/pr500153m
19. Jacobs T (1997) Why do plant cells divide? Plant Cell 9:1021–1029
20. Jiang Y, Yang B, Harris NS, Deyholos MK (2007) Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. J Exp Bot 58:3591–3607
21. Kende H, Zeevaart JAD (1997) The five “classical” plant hormones. Plant Cell 9:1197–1210
22. Kidd PS, Llugany M, Poschenrieder C, Gunse B, Barcelo J (2001) The role of root exudates in aluminum resistance and silicon-induced amelioration of aluminum toxicity in three varieties of maize (Zea mays L.). J Exp Bot 52:1339–1352
23. Kim YH, Khan AL, Kim DH, Lee SY, Kim KM, Waqas M, Jung HY, Shin JH, Kim JG, Lee IJ (2014) Silicon mitigates heavy metal stress by regulating P-type heavy metal ATPases, Oryza sativa low silicon genes, and endogenous phytohormones. BMC Plant Biol 14:13
24. Lata C, Prasad M (2011) Role of DREBs in regulation of abiotic stress response in plants. J Exp Bot 62:4731–4748
25. Li D, Zhang Y, Hu X, Shen X, Ma L, Su Z, Wang T, Dong J (2011) Transcriptional profiling of Medicago truncatula under salt stress identified a novel CBF transcription factor MtCBF4 that plays an important role in abiotic stress responses. BMC Plant Biol 11:109
26. Liang YC, Wong JW, Wei L (2005) Silicon-mediated enhancement of cadmium tolerance in maize (Zea mays L.) grown in cadmium contaminated soil. Chemosphere 58(4):475–483
27. Liang Y, Sun W, Zhu Y, Christie P (2007) Mechanisms of silicon-mediated alleviation of abiotic stresses in higher plants: a review. Environ Poll 147:422–428
28. Ma JF, Yamaji N (2006) Silicon uptake and accumulation in higher plants. Trends Plant Sci 11:392–397
29. Ma JF, Yamaji N, Mitani N, Tamai K, Konishi S, Fujiwara T, Katsuhara M, Yano M (2007) An efflux transporter of silicon in rice. Nature 448:209–211
30. Ma H, Song L, Huang Z, Yang Y, Wang S, Wang Z, Tong J, Gu W, Ma H, Xiao L (2014) Comparative proteomic analysis reveals molecular mechanism of seedling roots of different salt tolerant soybean genotypes in response to salinity stress. EuPA Open Proteomics 4:40–57
31. Magome H, Yamaguchi S, Hanada A, Kamiya Y, Oda K (2004) Dwarf and delayed flowering 1, novel Arabidopsis mutant deficient in gibberellin biosynthesis because of overexpression of a putative AP2 transcription factor. Plant J 37:720–729
32. Manaa A, Mimouni H, Wasti S, Gharbi E, Aschi-Smiti S, Faurobert M, Ahmed HB (2013) Comparative proteomic analysis of tomato (Solanum lycopersicum) leaves under salinity stress. Plant Omics J 6(4):268–277
33. Molassiotis AN, Diamantidis GC, Therios IN, Tsirakoglou V, Dimassi KN (2005) Oxidative stress, antioxidant activity and Fe(III)-chelate reductase activity of five prunus rootstocks explants in response to Fe deficiency. Plant Growth Regul 46:69–78
34. Mortz E, Krogh TN, Vorum H, Görg A (2001) Improved silver staining protocols for high sensitivity protein identification using matrix-assisted laser desorption/ionization-time of flight analysis. Proteomics 1:1359–1363
35. Muneer S, Kim TH, Qureshi MI (2012) Fe modulates Cd-induced oxidative stress and the expression of stress response proteins in the nodules of Vigna radiata. Plant Growth Regul 68:421–433
36. Muneer S, Hakeem KR, Mohamed R, Lee JH (2014a) Cadmium toxicity induced alterations in the root proteome of green gram in contrasting response towards iron supplement. Int J Mol Sci 15(4):6343–6355
37. Muneer S, Lee BR, Kim KY, Park SH, Zhang Q, Kim TH (2014b) Involvement of sulphur nutrition in modulating iron deficiency response in photosynthetic organelles of oilseed rape (Brassica napus L.). Photosynth Res 119:319–329
38. Muneer S, Park YG, Manivannan A, Soundararajan P, Jeong BR (2014c) Physiological and proteomic analysis in chloroplasts of Solanum lycopersicum L. under silicon efficiency and salinity stress. Int J Mol Sci 15:21803–21824
39. Nakashima K, Shinwar ZK, Sakuma Y, Seki M, Miura S, Shinozaki K, Yamaguchi-Shinozaki K (2000) Organization and expression of two Arabidopsis DREB2 genes encoding DRE-binding proteins involved in dehydration- and high salinity-responsive gene expression. Plant Mol Biol 42:657–665
40. Nam MH, Huh SM, Kim KM, Park WJ, Seo JB, Cho K, Kim DY, Kim BG, Yoon IS (2012) Comparative proteomic analysis of early salt stress-responsive proteins in roots of SnRK2 transgenic rice. Proteome Sci 10:25
41. Neumann D, Zur Neiden U (2001) Silicon and heavy metal tolerance of higher plants. Phytochemistry 56:685–692
42. Nwugo CC, Huerta AJ (2011) The effect of silicon on the leaf proteome of rice (Oryza sativa L.) plants under cadmium stress. J Proteome Res 10:518–528
43. Pandey A, Choudhary MK, Bhushan D, Chattopadhyay A, Chakraborty S, Datta A, Chakroborty N (2006) The nuclear proteome of chick pea (Cicer arietinum L.) reveals predicted and un-expected proteins. J Proteome Res 5(12):3301–3311
44. Qadir S, Qureshi MI, Javed S, Abdin MZ (2004) Genotypic variation in phytoremediation potential of Brassica juncea cultivars exposed to Cd-stress. Plant Sci 167:1171–1178
45. Qureshi MI, Muneer S, Bashir H, Ahmad J, Iqbal M (2010) Nodule physiology and proteomics of stresses legumes. Adv Bot Res 56:1–48
46. Rakwal R, Agrawal GK (2003) Rice proteomics: current status and future prospectives. Electrophoresis 24:3378–3389
47. Romero-Aranda MR, Jurado O, Cuartero J (2005) Silicon alleviates the deleterious salt effect on tomato plant growth by improving plant water status. J Plant Physiol 163:847–855
48. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, Yamaguchi-Shinozaki K (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration and cold-inducible gene expression. Biochem Biophy Res Commun 290:998–1009
49. Shevchenko A, Wilm M, Vorm O, Mann M (1996) Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels. Anal Chem 68:850–858
50. Shrestha RP, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, Allen AE (2012) Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana. BMC Genom 13:499
51. Sobhanian H, Aghaei K, Komatsu S (2011) Changes in the plant proteome resulting from salt stress: towards the creation of salt-tolerant crops? J Proteomics 4:1323–1337
52. Wang L, Liang W, Xing J, Tan F, Chen Y, Huang L, Cheng CL, Chen W (2013) Dynamics of chloroplast proteome in salt-stressed mangrove Kandelia candel (L.) Druce. J Proteome Res 12:5124–5136
53. Wang L, Liu X, Liang M, Tan F, Liang W, Chen Y, Lin Y, Huang L, Xing J, Chen W (2014) Proteomic analysis of salt-responsive proteins in the leaves of mangrove Kandelia candel short-term stress. PLOSOne 9(1):e83141
54. Witzel K, Weidner A, Surabhi GK, Börner A, Mock HP (2009) Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity. J Exp Bot 60(12):3545–3557
55. Xu XY, Fan R, Zheng R, Li CM, Yu DY (2011) Proteomic analysis of seed germination under salt stress in soybeans. J Zhejiang Uni Sci B 12:507–517
56. Yamaguchi S, Kamiya Y (2000) Gibberellin biosynthesis: its regulation by endogenous and environmental signals. Plant Cell Physiol 41:251–257