메뉴 건너뛰기




Volumn 2015, Issue , 2015, Pages

A general concept for consistent documentation of computational analyses

Author keywords

[No Author keywords available]

Indexed keywords

HUMAN; INFORMATION PROCESSING; PROCEDURES; WORD PROCESSING;

EID: 84943173527     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bav050     Document Type: Article
Times cited : (6)

References (20)
  • 1
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Bernstein, B.E., Birney, E., Dunham, I. et al. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57-74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3
  • 2
    • 51349115095 scopus 로고    scopus 로고
    • Big data: The future of biocuration
    • Howe, D., Costanzo, M., Fey, P. et al. (2008) Big data: the future of biocuration. Nature, 455, 47-50.
    • (2008) Nature , vol.455 , pp. 47-50
    • Howe, D.1    Costanzo, M.2    Fey, P.3
  • 3
    • 77952726050 scopus 로고    scopus 로고
    • Curators of the world unite: The international society of biocuration
    • Bateman, A. (2010) Curators of the world unite: the International Society of Biocuration. Bioinformatics, 26, 991.
    • (2010) Bioinformatics , vol.26 , pp. 991
    • Bateman, A.1
  • 4
    • 33845643077 scopus 로고    scopus 로고
    • A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
    • Rayner, T.F., Rocca-Serra, P., Spellman, P.T. et al. (2006) A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics, 7, 489.
    • (2006) BMC Bioinformatics , vol.7 , pp. 489
    • Rayner, T.F.1    Rocca-Serra, P.2    Spellman, P.T.3
  • 5
    • 84862196096 scopus 로고    scopus 로고
    • The modENCODE data coordination center: Lessons in harvesting comprehensive experimental details
    • Washington, N.L., Stinson, E.O., Perry, M.D. et al. (2011) The modENCODE data coordination center: lessons in harvesting comprehensive experimental details. Database, 2011, 1-17.
    • (2011) Database , vol.2011 , pp. 1-17
    • Washington, N.L.1    Stinson, E.O.2    Perry, M.D.3
  • 6
    • 77956548952 scopus 로고    scopus 로고
    • ISA software suite: Supporting standards-compliant experimental annotation and enabling curation at the community level
    • Rocca-Serra, P., Brandizi, M., Maguire, E. et al. (2010) ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level. Bioinformatics, 26, 2354-2356.
    • (2010) Bioinformatics , vol.26 , pp. 2354-2356
    • Rocca-Serra, P.1    Brandizi, M.2    Maguire, E.3
  • 7
    • 84865760395 scopus 로고    scopus 로고
    • Gencode: The reference human genome annotation for the encode project
    • Harrow, J., Frankish, A., Gonzalez, J.M. et al. (2012) GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res., 22, 1760-1774.
    • (2012) Genome Res , vol.22 , pp. 1760-1774
    • Harrow, J.1    Frankish, A.2    Gonzalez, J.M.3
  • 8
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • Lander, E.S., Linton, L.M., Birren, B. et al. (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3
  • 9
    • 77952148742 scopus 로고    scopus 로고
    • Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
    • Guttman, M., Garber, M., Levin, J.Z. et al. (2010) Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs. Nat. Biotechnol., 28, 503-510.
    • (2010) Nat. Biotechnol , vol.28 , pp. 503-510
    • Guttman, M.1    Garber, M.2    Levin, J.Z.3
  • 10
    • 84892753494 scopus 로고    scopus 로고
    • BioC: A minimalist approach to interoperability for biomedical text processing
    • Comeau, D.C., Islamaj, D.R., Ciccarese, P. et al. (2013) BioC: a minimalist approach to interoperability for biomedical text processing. Database (Oxford), 2013, bat064.
    • (2013) Database (Oxford) , vol.2013 , pp. bat064
    • Comeau, D.C.1    Islamaj, D.R.2    Ciccarese, P.3
  • 11
    • 84891817240 scopus 로고    scopus 로고
    • Capturing cooperative interactions with the PSI-MI format
    • Van Roey, K., Orchard, S., Kerrien, S. et al. (2013) Capturing cooperative interactions with the PSI-MI format. Database (Oxford), 2013, bat066.
    • (2013) Database (Oxford) , vol.2013 , pp. bat066
    • Van Roey, K.1    Orchard, S.2    Kerrien, S.3
  • 12
    • 84900988020 scopus 로고    scopus 로고
    • DeepTools: A flexible platform for exploring deep-sequencing data
    • Ramírez, F., Dündar, F., Diehl, S. et al. (2014) deepTools: a flexible platform for exploring deep-sequencing data. Nucleic Acids Res., 42 (Web Server issue), 187-191.
    • (2014) Nucleic Acids Res , vol.42 , Issue.WEB SERVER ISSUE , pp. 187-191
    • Ramírez, F.1    Dündar, F.2    Diehl, S.3
  • 13
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq (MACS)
    • Zhang, Y., Liu, T., Meyer, C.A. et al. (2008) Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.1-R137.9.
    • (2008) Genome Biol , vol.9 , pp. R1371-R1379
    • Zhang, Y.1    Liu, T.2    Meyer, C.A.3
  • 14
    • 84857707318 scopus 로고    scopus 로고
    • ChromHMM: Automating chromatin-state discovery and characterization
    • Ernst, J., Kellis, M. (2012) ChromHMM: automating chromatin-state discovery and characterization. Nat. Methods, 9, 215-216.
    • (2012) Nat. Methods , vol.9 , pp. 215-216
    • Ernst, J.1    Kellis, M.2
  • 15
    • 84862785201 scopus 로고    scopus 로고
    • Unsupervised pattern discovery in human chromatin structure through genomic segmentation
    • Hoffman, M.M., Buske, O.J., Wang, J. et al. (2012) Unsupervised pattern discovery in human chromatin structure through genomic segmentation. Nat. Methods, 9, 473-476.
    • (2012) Nat. Methods , vol.9 , pp. 473-476
    • Hoffman, M.M.1    Buske, O.J.2    Wang, J.3
  • 16
    • 25844449770 scopus 로고    scopus 로고
    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine, B., Riemer, C., Hardison, R.C. et al. (2005) Galaxy: a platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455.
    • (2005) Genome Res , vol.15 , pp. 1451-1455
    • Giardine, B.1    Riemer, C.2    Hardison, R.C.3
  • 17
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks, J., Nekrutenko, A., Taylor, J. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
    • (2010) Genome Biol , vol.11 , pp. R86
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 18
    • 75949108066 scopus 로고    scopus 로고
    • Galaxy: A web-based genome analysis tool for experimentalists
    • Blankenberg, D., Von Kuster, G., Coraor, N. et al. (2010) Galaxy: a web-based genome analysis tool for experimentalists. Curr. Protoc. Mol. Biol., 89:19.10:19.10.1-19.10.21.
    • (2010) Curr. Protoc. Mol. Biol , vol.89 , pp. 191019101-191191021
    • Blankenberg, D.1    Von Kuster, G.2    Coraor, N.3
  • 19
    • 84882310107 scopus 로고    scopus 로고
    • The Taverna workflow suite: Designing and executing workflows of Web Services on the desktop, web or in the cloud
    • Wolstencroft, K., Haines, R., Fellows, D. et al. (2013) The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Res., 41 (Web Server issue), W557-W561.
    • (2013) Nucleic Acids Res , vol.41 , Issue.WEB SERVER ISSUE , pp. W557-W561
    • Wolstencroft, K.1    Haines, R.2    Fellows, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.