Isolation and characterization of actinobacteria from Yalujiang coastal wetland, North China

Asian Pacific Journal of Tropical Biomedicine

Volumn 5, Issue 7, 2015, Pages 555-560

  Yu, Jicheng ^a   Zhang, Liu ^a   Liu, Qiu ^a   Qi, Xiaohui ^a   Ji, Ying ^a   Kim, Beom Seok ^b  

^a DALIAN NATIONALITIES UNIVERSITY   (China)

^b Korea University   (South Korea)

Author keywords

16S rRNA; Actinomycetes; Antimicrobial activity; Yalujiang coastal wetland

Indexed keywords

RNA 16S;

ACTINOBACTERIA; AMYCOLATOPSIS; ANTIFUNGAL ACTIVITY; ANTIMICROBIAL ACTIVITY; ARTICLE; BACTERIUM CULTURE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; CHINA; CULTURE MEDIUM; DNA SEQUENCE; ESTUARY; GENE SEQUENCE; GENOTYPE; MARINE ENVIRONMENT; MICROMONOSPORA; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PSEUDONOCARDIA; RHIZOSPHERE BACTERIUM; RHODOCOCCUS; SALINITY; SEQUENCE ANALYSIS; STREPTOMYCES; THERMOMONOSPORA; WETLAND;

EID: 84942981577     PISSN: 22211691     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apjtb.2015.04.007     Document Type: Article

References (26)

1. Djokic L, Narancic T, Nikodinovic-Runic J, Savic M, Vasiljevic B. Isolation and characterization of four novel Gram-positive bacteria associated with the rhizosphere of two endemorelict plants capable of degrading a broad range of aromatic substrates. Appl Microbiol Biotechnol 2011; 91(4): 1227-38.
2. Zhang Y, Liu M, Chen H, Hou G. Source identification of polycyclic aromatic hydrocarbons in different ecological wetland components of the Qinkenpao Wetland in Northeast China. Ecotoxicol Environ Saf 2014; 102: 160-7.
3. Ding D, Chen G, Wang B, Wang Q, Liu D, Peng M, et al. Culturable actinomycetes from desert ecosystem in northeast of Qinghai-Tibet Plateau. Ann Microbiol 2013; 63(1): 259-66.
4. Zhang YQ, Liu HY, Chen J, Yuan LJ, Sun W, Zhang LX, et al. Diversity of culturable actinobacteria from Qinghai-Tibet Plateau, China. Antonie Van Leeuwenhoek 2010; 98(2): 213-23.
5. Malviya N, Yandigeri MS, Yadav AK, Solanki MK, Arora DK. Isolation and characterization of novel alkali-halophilic actinomycetes from the Chilika brackish water lake, India. Ann Microbiol 2014; 64(4): 1829-38.
6. Gebreyohannes G, Moges F, Sahile S, Raja N. Isolation and characterization of potential antibiotic producing actinomycetes from water and sediments of Lake Tana, Ethiopia. Asian Pac J Trop Biomed 2013; 3(6): 426-35.
7. Bensultana A, Ouhdouch Y, Hassani L, Mezrioui NE, Rafouk L. Isolation and characterization of wastewater sand filter actinomycetes. World J Microbiol Biotechnol 2010; 26(3): 481-7.
8. Kumar V, Bharti A, Gupta VK, Gusain O, Bisht GS. Actinomycetes from solitary wasp mud nest and swallow bird mud nest: isolation and screening for their antibacterial activity. World J Microbiol Biotechnol 2012; 28(3): 871-80.
9. Xu P, Li WJ, Xu LH, Jiang CL. A microwave-based method for genomic DNA extraction from actinomycetes. Microbiol China 2003; 30(4): 82-4.
10. Chun J, Goodfellow M. A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 1995; 45(2): 240-5.
11. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, et al. Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 2012; 62: 716-21.
12. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994; 22(22): 4673-80.
13. Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4(4): 406-25.
14. Fitch WM. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971; 20(4): 406-16.
15. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 1981; 17(6): 368-76.
16. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28(10): 2731-9.
17. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980; 16(12): 111-20.
18. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985; 39(4): 783-91.
19. Sharma SCV, David E. A comparative study on selected marine actinomycetes from Pulicat, Muttukadu, and Ennore estuaries. Asian Pac J Trop Biomed 2012; 2(Suppl 3): S1827-34.
20. Zucchi TD, Guidolin AS, Cônsoli FL. Isolation and characterization of actinobacteria ectosymbionts from Acromyrmex subterraneus brunneus (Hymenoptera, Formicidae). Microbiol Res 2011; 166(1): 68-76.
21. Promnuan Y, Kudo T, Chantawannakul P. Actinomycetes isolated from beehives in Thailand. World J Microbiol Biotechnol 2009; 25(9): 1685-9.
22. Radhakrishnan M, Suganya S, Balagurunathan R, Kumar V. Preliminary screening for antibacterial and antimycobacterial activity of actinomycetes from less explored ecosystems. World J Microbiol Biotechnol 2010; 26(3): 561-6.
23. Tiwari K, Gupta RK. Diversity and isolation of rare actinomycetes: an overview. Crit Rev Microbiol 2013; 39(3): 256-94.
24. Fuentes MS, Benimeli CS, Cuozzo SA, Amoroso MJ. Isolation of pesticide-degrading actinomycetes from a contaminated site: bacterial growth, removal and dechlorination of organochlorine pesticides. Int Biodeterioration Biodegradation 2010; 64(6): 434-41.
25. Kinkel LL, Schlatter DC, Bakker MG, Arenz BE. Streptomyces competition and co-evolution in relation to plant disease suppression. Res Microbiol 2012; 163(8): 490-9.
26. Rashad F, Fathy HM, El-Zayat AS, Elghonaimy AM. Isolation and characterization of multifunctional Streptomyces species with antimicrobial, nematicidal and phytohormone activities from marine environments in Egypt. Microbiol Res 2015; http://dx.doi.org/10.1016/j.micres.2015.03.002.