-
1
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, et al. Landscape of transcription in human cells. Nature 2012;489:101-8.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
-
2
-
-
79957840356
-
Long noncoding RNAs and human disease
-
Wapinski O, Chang HY. Long noncoding RNAs and human disease. Trends Cell Biol 2011;21:354-61.
-
(2011)
Trends Cell Biol
, vol.21
, pp. 354-361
-
-
Wapinski, O.1
Chang, H.Y.2
-
3
-
-
82155186923
-
The emergence of lncRNAs in cancer biology
-
Prensner JR, Chinnaiyan AM. The emergence of lncRNAs in cancer biology. Cancer Discov 2011;1:391-407.
-
(2011)
Cancer Discov
, vol.1
, pp. 391-407
-
-
Prensner, J.R.1
Chinnaiyan, A.M.2
-
4
-
-
84880154515
-
Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer
-
Du Z, Fei T, Verhaak RG, Su Z, Zhang Y, Brown M, et al. Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer. Nat Struct Mol Biol 2013;20:908-13.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 908-913
-
-
Du, Z.1
Fei, T.2
Verhaak, R.G.3
Su, Z.4
Zhang, Y.5
Brown, M.6
-
5
-
-
77953096072
-
-
Yap KL, Li S, Munoz-Cabello AM, Raguz S, Zeng L, Mujtaba S, et al. Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a. Mol Cell 2010;38:662-74.
-
(2010)
Molecular Interplay of the Noncoding RNA ANRIL and Methylated Histone H3 Lysine 27 by Polycomb CBX7 in Transcriptional Silencing of INK4a. Mol Cell
, vol.38
, pp. 662-674
-
-
Yap, K.L.1
Li, S.2
Munoz-Cabello, A.M.3
Raguz, S.4
Zeng, L.5
Mujtaba, S.6
-
6
-
-
34250729138
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs
-
Rinn JL, Kertesz M, Wang JK, Squazzo SL, Xu X, Brugmann SA, et al. Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs. Cell 2007;129:1311-23.
-
(2007)
Cell
, vol.129
, pp. 1311-1323
-
-
Rinn, J.L.1
Kertesz, M.2
Wang, J.K.3
Squazzo, S.L.4
Xu, X.5
Brugmann, S.A.6
-
7
-
-
79959198166
-
Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA
-
Wang D, Garcia-Bassets I, Benner C, Li W, Su X, Zhou Y, et al. Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA. Nature 2011;474:390-4.
-
(2011)
Nature
, vol.474
, pp. 390-394
-
-
Wang, D.1
Garcia-Bassets, I.2
Benner, C.3
Li, W.4
Su, X.5
Zhou, Y.6
-
8
-
-
77956882723
-
A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression
-
Bernard D, Prasanth KV, Tripathi V, Colasse S, Nakamura T, Xuan Z, et al. A long nuclear-retained non-coding RNA regulates synaptogenesis by modulating gene expression. EMBO J 2010;29:3082-93.
-
(2010)
EMBO J
, vol.29
, pp. 3082-3093
-
-
Bernard, D.1
Prasanth, K.V.2
Tripathi, V.3
Colasse, S.4
Nakamura, T.5
Xuan, Z.6
-
9
-
-
77956927823
-
The nuclearretained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation
-
Tripathi V, Ellis JD, Shen Z, Song DY, Pan Q, Watt AT, et al. The nuclearretained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell 2010;39:925-38.
-
(2010)
Mol Cell
, vol.39
, pp. 925-938
-
-
Tripathi, V.1
Ellis, J.D.2
Shen, Z.3
Song, D.Y.4
Pan, Q.5
Watt, A.T.6
-
10
-
-
84884994218
-
The cancer genome atlas pan-cancer analysis project
-
Cancer Genome Atlas Research N, Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet 2013;45:1113-20.
-
(2013)
Nat Genet
, vol.45
, pp. 1113-1120
-
-
Cancer Genome Atlas Research N1
Weinstein, J.N.2
Collisson, E.A.3
Mills, G.B.4
Shaw, K.R.5
Ozenberger, B.A.6
-
11
-
-
84924063355
-
The landscape of long noncoding RNAs in the human transcriptome
-
Iyer MK, Niknafs YS, Malik R, Singhal U, Sahu A, Hosono Y, et al. The landscape of long noncoding RNAs in the human transcriptome. Nat Genet 2015;47:199-208.
-
(2015)
Nat Genet
, vol.47
, pp. 199-208
-
-
Iyer, M.K.1
Niknafs, Y.S.2
Malik, R.3
Singhal, U.4
Sahu, A.5
Hosono, Y.6
-
12
-
-
84859169877
-
The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
-
Barretina J, Caponigro G, Stransky N, Venkatesan K, Margolin AA, Kim S, et al. The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity. Nature 2012;483:603-7.
-
(2012)
Nature
, vol.483
, pp. 603-607
-
-
Barretina, J.1
Caponigro, G.2
Stransky, N.3
Venkatesan, K.4
Margolin, A.A.5
Kim, S.6
-
13
-
-
84868309107
-
The transcriptional landscape and mutational profile of lung adenocarcinoma
-
Seo JS, Ju YS, Lee WC, Shin JY, Lee JK, Bleazard T, et al. The transcriptional landscape and mutational profile of lung adenocarcinoma. Genome Res 2012;22:2109-19.
-
(2012)
Genome Res
, vol.22
, pp. 2109-2119
-
-
Seo, J.S.1
Ju, Y.S.2
Lee, W.C.3
Shin, J.Y.4
Lee, J.K.5
Bleazard, T.6
-
14
-
-
84880967722
-
Integrated molecular analysis of clear-cell renal cell carcinoma
-
Sato Y, Yoshizato T, Shiraishi Y, Maekawa S, Okuno Y, Kamura T, et al. Integrated molecular analysis of clear-cell renal cell carcinoma. Nat Genet 2013;45:860-7.
-
(2013)
Nat Genet
, vol.45
, pp. 860-867
-
-
Sato, Y.1
Yoshizato, T.2
Shiraishi, Y.3
Maekawa, S.4
Okuno, Y.5
Kamura, T.6
-
15
-
-
84927166354
-
RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas
-
Bao ZS, Chen HM, Yang MY, Zhang CB, Yu K, Ye WL, et al. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas. Genome Res 2014;24:1765-73.
-
(2014)
Genome Res
, vol.24
, pp. 1765-1773
-
-
Bao, Z.S.1
Chen, H.M.2
Yang, M.Y.3
Zhang, C.B.4
Yu, K.5
Ye, W.L.6
-
16
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008;5:621-8.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
17
-
-
84903987099
-
The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes
-
Han L, Yuan Y, Zheng S, Yang Y, Li J, Edgerton ME, et al. The Pan-Cancer analysis of pseudogene expression reveals biologically and clinically relevant tumour subtypes. Nat Commun 2014;5:3963.
-
(2014)
Nat Commun
, vol.5
, pp. 3963
-
-
Han, L.1
Yuan, Y.2
Zheng, S.3
Yang, Y.4
Li, J.5
Edgerton, M.E.6
-
18
-
-
84902148239
-
-
Van Allen EM, Wagle N, Stojanov P, Perrin DL, Cibulskis K, Marlow S, et al. Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. Nat Med 2014;20:682-8.
-
(2014)
Whole-exome Sequencing and Clinical Interpretation of Formalin-fixed, Paraffin-embedded Tumor Samples to Guide Precision Cancer Medicine. Nat Med
, vol.20
, pp. 682-688
-
-
Van Allen, E.M.1
Wagle, N.2
Stojanov, P.3
Perrin, D.L.4
Cibulskis, K.5
Marlow, S.6
-
19
-
-
77954182362
-
ConsensusClusterPlus: A class discovery tool with confidence assessments and item tracking
-
Wilkerson MD, Hayes DN. ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking. Bioinformatics 2010;26:1572-3.
-
(2010)
Bioinformatics
, vol.26
, pp. 1572-1573
-
-
Wilkerson, M.D.1
Hayes, D.N.2
-
20
-
-
84887083535
-
TCPA: A resource for cancer functional proteomics data
-
Li J, Lu Y, Akbani R, Ju Z, Roebuck PL, Liu W, et al. TCPA: a resource for cancer functional proteomics data. Nat Methods 2013;10:1046-7.
-
(2013)
Nat Methods
, vol.10
, pp. 1046-1047
-
-
Li, J.1
Lu, Y.2
Akbani, R.3
Ju, Z.4
Roebuck, P.L.5
Liu, W.6
-
21
-
-
84901814887
-
Apancancer proteomic perspective on The Cancer Genome Atlas
-
Akbani R, Ng PK, Werner HM, Shahmoradgoli M, Zhang F, Ju Z, et al. Apancancer proteomic perspective on The Cancer Genome Atlas. Nat Commun 2014;5:3887.
-
(2014)
Nat Commun
, vol.5
, pp. 3887
-
-
Akbani, R.1
Ng, P.K.2
Werner, H.M.3
Shahmoradgoli, M.4
Zhang, F.5
Ju, Z.6
-
22
-
-
84911903523
-
IncRNA directs cooperative epigenetic regulation downstream of chemokine signals
-
Xing Z, Lin A, Li C, Liang K, Wang S, Liu Y, et al. IncRNA directs cooperative epigenetic regulation downstream of chemokine signals. Cell 2014;159:1110-25.
-
(2014)
Cell
, vol.159
, pp. 1110-1125
-
-
Xing, Z.1
Lin, A.2
Li, C.3
Liang, K.4
Wang, S.5
Liu, Y.6
-
23
-
-
77951118936
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis
-
Gupta RA, Shah N, Wang KC, Kim J, Horlings HM, Wong DJ, et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010;464:1071-6.
-
(2010)
Nature
, vol.464
, pp. 1071-1076
-
-
Gupta, R.A.1
Shah, N.2
Wang, K.C.3
Kim, J.4
Horlings, H.M.5
Wong, D.J.6
-
24
-
-
84877254190
-
Integrated genomic characterization of endometrial carcinoma
-
The Cancer Genome Research Network. Integrated genomic characterization of endometrial carcinoma. Nature 2013;497:67-73.
-
(2013)
Nature
, vol.497
, pp. 67-73
-
-
The Cancer Genome Research Network1
-
25
-
-
84885912472
-
IncRNome: A comprehensive knowledgebase of human long noncoding RNAs
-
Bhartiya D, Pal K, Ghosh S, Kapoor S, Jalali S, Panwar B, et al. IncRNome: a comprehensive knowledgebase of human long noncoding RNAs. Database 2013;2013:bat034.
-
(2013)
Database
, vol.2013
, pp. bat034
-
-
Bhartiya, D.1
Pal, K.2
Ghosh, S.3
Kapoor, S.4
Jalali, S.5
Panwar, B.6
-
26
-
-
84876125829
-
LncRNADisease: A database for long-non-coding RNA-associated diseases
-
Chen G, Wang Z, Wang D, Qiu C, Liu M, Chen X, et al. LncRNADisease: a database for long-non-coding RNA-associated diseases. Nucleic Acids Res 2013;41:D983-6.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D983-D986
-
-
Chen, G.1
Wang, Z.2
Wang, D.3
Qiu, C.4
Liu, M.5
Chen, X.6
-
27
-
-
58149177177
-
NRED: A database of long noncoding RNA expression
-
Dinger ME, Pang KC, Mercer TR, Crowe ML, Grimmond SM, Mattick JS. NRED: a database of long noncoding RNA expression. Nucleic Acids Res 2009;37:D122-6.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D122-D126
-
-
Dinger, M.E.1
Pang, K.C.2
Mercer, T.R.3
Crowe, M.L.4
Grimmond, S.M.5
Mattick, J.S.6
-
28
-
-
84891818924
-
starBase v2.0: Decoding miRNAceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data
-
Li JH, Liu S, Zhou H, Qu LH, Yang JH. starBase v2.0: decoding miRNAceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data. Nucleic Acids Res 2014;42:D92-7.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D92-D97
-
-
Li, J.H.1
Liu, S.2
Zhou, H.3
Qu, L.H.4
Yang, J.H.5
-
29
-
-
84876523096
-
DIANA-LncBase: Experimentally verified and computationally predicted microRNA targets on long non-coding RNAs
-
Paraskevopoulou MD, Georgakilas G, Kostoulas N, Reczko M, Maragkakis M, Dalamagas TM, et al. DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res 2013;41:D239-45.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D239-D245
-
-
Paraskevopoulou, M.D.1
Georgakilas, G.2
Kostoulas, N.3
Reczko, M.4
Maragkakis, M.5
Dalamagas, T.M.6
-
30
-
-
84907032373
-
lncRNAtor: A comprehensive resource for functional investigation of long non-coding RNAs
-
Park C, Yu N, Choi I, Kim W, Lee S. lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs. Bioinformatics 2014;30:2480-5.
-
(2014)
Bioinformatics
, vol.30
, pp. 2480-2485
-
-
Park, C.1
Yu, N.2
Choi, I.3
Kim, W.4
Lee, S.5
-
31
-
-
84946013175
-
lncRNAdb v2.0: Expanding the reference database for functional long noncoding RNAs
-
Quek XC, Thomson DW, Maag JL, Bartonicek N, Signal B, Clark MB, et al. lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs. Nucleic Acids Res 2015;43:D168-73.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D168-D173
-
-
Quek, X.C.1
Thomson, D.W.2
Maag, J.L.3
Bartonicek, N.4
Signal, B.5
Clark, M.B.6
-
32
-
-
84946086288
-
An update on LNCipedia: A database for annotated human lncRNA sequences
-
Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, et al. An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Res 2015;43:D174-80.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D174-D180
-
-
Volders, P.J.1
Verheggen, K.2
Menschaert, G.3
Vandepoele, K.4
Martens, L.5
Vandesompele, J.6
-
33
-
-
84891798006
-
NONCODEv4: Exploring the world of long non-coding RNA genes
-
Xie C, Yuan J, Li H, Li M, Zhao G, Bu D, et al. NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res 2014;42:D98-103.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D98-D103
-
-
Xie, C.1
Yuan, J.2
Li, H.3
Li, M.4
Zhao, G.5
Bu, D.6
-
34
-
-
84876566914
-
ChIPBase: A database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
-
Yang JH, Li JH, Jiang S, Zhou H, Qu LH. ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data. Nucleic Acids Res 2013;41:D177-87.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D177-D187
-
-
Yang, J.H.1
Li, J.H.2
Jiang, S.3
Zhou, H.4
Qu, L.H.5
-
35
-
-
79961202865
-
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
-
Prensner JR, Iyer MK, Balbin OA, Dhanasekaran SM, Cao Q, Brenner JC, et al. Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression. Nat Biotechnol 2011;29:742-9.
-
(2011)
Nat Biotechnol
, vol.29
, pp. 742-749
-
-
Prensner, J.R.1
Iyer, M.K.2
Balbin, O.A.3
Dhanasekaran, S.M.4
Cao, Q.5
Brenner, J.C.6
-
36
-
-
84907915122
-
Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer
-
White NM, Cabanski CR, Silva-Fisher JM, Dang HX, Govindan R, Maher CA. Transcriptome sequencing reveals altered long intergenic non-coding RNAs in lung cancer. Genome Biol 2014;15:429.
-
(2014)
Genome Biol
, vol.15
, pp. 429
-
-
White, N.M.1
Cabanski, C.R.2
Silva-Fisher, J.M.3
Dang, H.X.4
Govindan, R.5
Maher, C.A.6
|