메뉴 건너뛰기




Volumn 26, Issue 10, 2015, Pages 1050-1057

Composition and function of the undernourished neonatal mouse intestinal microbiome

Author keywords

Energy metabolism; Intestinal microbiome; Metagenomics; Neonatal mice; Protein energy undernutrition

Indexed keywords

GLYCAN; INOSITOL PHOSPHATE; PHYTATE; RNA 16S; BACTERIAL DNA;

EID: 84942549256     PISSN: 09552863     EISSN: 18734847     Source Type: Journal    
DOI: 10.1016/j.jnutbio.2015.04.010     Document Type: Article
Times cited : (67)

References (47)
  • 1
    • 84942556897 scopus 로고    scopus 로고
    • World Health Organization (WHO), World Bank
    • UNICEF, New York; WHO, Geneva; The World Bank, Washington, DC
    • United Nations Childrens' Fund (UNICEF) World Health Organization (WHO), World Bank. UNICEF-WHO-World Bank joint child malnutrition estimates 2012, UNICEF, New York; WHO, Geneva; The World Bank, Washington, DC.
    • (2012) UNICEF-WHO-World Bank joint child malnutrition estimates
  • 2
    • 80052982379 scopus 로고    scopus 로고
    • Long-term consequences of stunting in early life
    • Dewey K.G., Begum K. Long-term consequences of stunting in early life. Matern Child Nutr 2011, 7(Suppl. 3):5-18.
    • (2011) Matern Child Nutr , vol.7 , pp. 5-18
    • Dewey, K.G.1    Begum, K.2
  • 4
    • 50249163771 scopus 로고    scopus 로고
    • Malnutrition as an enteric infectious disease with long-term effects on child development
    • Guerrant R.L., Oria R.B., Moore S.R., Oria M.O., Lima A.A. Malnutrition as an enteric infectious disease with long-term effects on child development. Nutr Rev 2008, 66:487-505.
    • (2008) Nutr Rev , vol.66 , pp. 487-505
    • Guerrant, R.L.1    Oria, R.B.2    Moore, S.R.3    Oria, M.O.4    Lima, A.A.5
  • 8
    • 84903134830 scopus 로고    scopus 로고
    • Persistent gut microbiota immaturity in malnourished Bangladeshi children
    • Subramanian S., Huq S., Yatsunenko T., Haque R., Mahfuz M., Alam M.A., et al. Persistent gut microbiota immaturity in malnourished Bangladeshi children. Nature 2014, 510:417-421.
    • (2014) Nature , vol.510 , pp. 417-421
    • Subramanian, S.1    Huq, S.2    Yatsunenko, T.3    Haque, R.4    Mahfuz, M.5    Alam, M.A.6
  • 9
    • 84918508127 scopus 로고    scopus 로고
    • An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome
    • Ahmed T., Auble D., Berkley J.A., Black R., Ahern P.P., Hossain M., et al. An evolving perspective about the origins of childhood undernutrition and nutritional interventions that includes the gut microbiome. Ann N Y Acad Sci 2014, 1332:22-38.
    • (2014) Ann N Y Acad Sci , vol.1332 , pp. 22-38
    • Ahmed, T.1    Auble, D.2    Berkley, J.A.3    Black, R.4    Ahern, P.P.5    Hossain, M.6
  • 10
    • 84894276986 scopus 로고    scopus 로고
    • The undernourished neonatal mouse metabolome reveals evidence of liver and biliary dysfunction, inflammation, and oxidative stress
    • Preidis G.A., Keaton M.A., Campeau P.M., Bessard B.C., Conner M.E., Hotez P.J. The undernourished neonatal mouse metabolome reveals evidence of liver and biliary dysfunction, inflammation, and oxidative stress. J Nutr 2014, 144:273-281.
    • (2014) J Nutr , vol.144 , pp. 273-281
    • Preidis, G.A.1    Keaton, M.A.2    Campeau, P.M.3    Bessard, B.C.4    Conner, M.E.5    Hotez, P.J.6
  • 11
    • 84862276328 scopus 로고    scopus 로고
    • Structure, function and diversity of the healthy human microbiome
    • Human Microbiome Project Consortium Structure, function and diversity of the healthy human microbiome. Nature 2012, 486:207-214.
    • (2012) Nature , vol.486 , pp. 207-214
  • 12
    • 84862286169 scopus 로고    scopus 로고
    • A framework for human microbiome research
    • Human Microbiome Project Consortium A framework for human microbiome research. Nature 2012, 486:215-221.
    • (2012) Nature , vol.486 , pp. 215-221
  • 13
    • 84863981120 scopus 로고    scopus 로고
    • Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
    • Caporaso J.G., Lauber C.L., Walters W.A., Berg-Lyons D., Huntley J., Fierer N., et al. Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J 2012, 6:1621-1624.
    • (2012) ISME J , vol.6 , pp. 1621-1624
    • Caporaso, J.G.1    Lauber, C.L.2    Walters, W.A.3    Berg-Lyons, D.4    Huntley, J.5    Fierer, N.6
  • 14
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: highly accurate OTU sequences from microbial amplicon reads
    • Edgar R.C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods 2013, 10:996-998.
    • (2013) Nat Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 16
    • 33748713890 scopus 로고    scopus 로고
    • UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context
    • Lozupone C., Hamady M., Knight R. UniFrac-an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics 2006, 7:371.
    • (2006) BMC Bioinformatics , vol.7 , pp. 371
    • Lozupone, C.1    Hamady, M.2    Knight, R.3
  • 18
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adaptor sequences from high-throughput sequencing reads
    • Martin M. Cutadapt removes adaptor sequences from high-throughput sequencing reads. EMBnet J 2011, 17:10-12.
    • (2011) EMBnet J , vol.17 , pp. 10-12
    • Martin, M.1
  • 19
    • 79952422304 scopus 로고    scopus 로고
    • Quality control and preprocessing of metagenomic datasets
    • Schmieder R., Edwards R. Quality control and preprocessing of metagenomic datasets. Bioinformatics 2011, 27:863-864.
    • (2011) Bioinformatics , vol.27 , pp. 863-864
    • Schmieder, R.1    Edwards, R.2
  • 20
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B., Salzberg S.L. Fast gapped-read alignment with Bowtie 2. Nat Methods 2012, 9:357-359.
    • (2012) Nat Methods , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 21
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto encyclopedia of genes and genomes
    • Kanehisa M., Goto S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res 2000, 28:27-30.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 23
    • 50249143531 scopus 로고    scopus 로고
    • Cryptosporidium infection causes undernutrition, and conversely, weanling undernutrition intensifies infection
    • Coutinho B.P., Oria R.B., Vieira C.M., Sevilleja J.E., Warren C.A., Maciel J.G., et al. Cryptosporidium infection causes undernutrition, and conversely, weanling undernutrition intensifies infection. J Parasitol 2008, 94:1225-1232.
    • (2008) J Parasitol , vol.94 , pp. 1225-1232
    • Coutinho, B.P.1    Oria, R.B.2    Vieira, C.M.3    Sevilleja, J.E.4    Warren, C.A.5    Maciel, J.G.6
  • 24
    • 77954745029 scopus 로고    scopus 로고
    • Enteroaggregative Escherichia coli (EAEC) impairs growth while malnutrition worsens EAEC infection: a novel murine model of the infection malnutrition cycle
    • Roche J.K., Cabel A., Sevilleja J., Nataro J., Guerrant R.L. Enteroaggregative Escherichia coli (EAEC) impairs growth while malnutrition worsens EAEC infection: a novel murine model of the infection malnutrition cycle. J Infect Dis 2010, 202:506-514.
    • (2010) J Infect Dis , vol.202 , pp. 506-514
    • Roche, J.K.1    Cabel, A.2    Sevilleja, J.3    Nataro, J.4    Guerrant, R.L.5
  • 25
    • 84861569494 scopus 로고    scopus 로고
    • Novel in vitro and in vivo models and potential new therapeutics to break the vicious cycle of Cryptosporidium infection and malnutrition
    • Costa L.B., Noronha F.J., Roche J.K., Sevilleja J.E., Warren C.A., Oria R., et al. Novel in vitro and in vivo models and potential new therapeutics to break the vicious cycle of Cryptosporidium infection and malnutrition. J Infect Dis 2012, 205:1464-1471.
    • (2012) J Infect Dis , vol.205 , pp. 1464-1471
    • Costa, L.B.1    Noronha, F.J.2    Roche, J.K.3    Sevilleja, J.E.4    Warren, C.A.5    Oria, R.6
  • 26
    • 84891960743 scopus 로고    scopus 로고
    • Protein-energy malnutrition alters IgA responses to rotavirus vaccination and infection but does not impair vaccine efficacy in mice
    • Maier E.A., Weage K.J., Guedes M.M., Denson L.A., McNeal M.M., Bernstein D.I., et al. protein-energy malnutrition alters IgA responses to rotavirus vaccination and infection but does not impair vaccine efficacy in mice. Vaccine 2013, 32:48-53.
    • (2013) Vaccine , vol.32 , pp. 48-53
    • Maier, E.A.1    Weage, K.J.2    Guedes, M.M.3    Denson, L.A.4    McNeal, M.M.5    Bernstein, D.I.6
  • 28
    • 5444248493 scopus 로고    scopus 로고
    • Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium
    • Derrien M., Vaughan E.E., Plugge C.M., de Vos W.M. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 2004, 54:1469-1476.
    • (2004) Int J Syst Evol Microbiol , vol.54 , pp. 1469-1476
    • Derrien, M.1    Vaughan, E.E.2    Plugge, C.M.3    de Vos, W.M.4
  • 29
    • 77954672686 scopus 로고    scopus 로고
    • Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women
    • Santacruz A., Collado M.C., Garcia-Valdes L., Segura M.T., Martin-Lagos J.A., Anjos T., et al. Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women. Br J Nutr 2010, 104:83-92.
    • (2010) Br J Nutr , vol.104 , pp. 83-92
    • Santacruz, A.1    Collado, M.C.2    Garcia-Valdes, L.3    Segura, M.T.4    Martin-Lagos, J.A.5    Anjos, T.6
  • 30
    • 84868197954 scopus 로고    scopus 로고
    • The microbiota of the gut in preschool children with normal and excessive body weight
    • Karlsson C.L., Onnerfalt J., Xu J., Molin G., Ahrne S., Thorngren-Jerneck K. The microbiota of the gut in preschool children with normal and excessive body weight. Obesity 2012, 20:2257-2261.
    • (2012) Obesity , vol.20 , pp. 2257-2261
    • Karlsson, C.L.1    Onnerfalt, J.2    Xu, J.3    Molin, G.4    Ahrne, S.5    Thorngren-Jerneck, K.6
  • 31
    • 53849104768 scopus 로고    scopus 로고
    • Distinct composition of gut microbiota during pregnancy in overweight and normal-weight women
    • Collado M.C., Isolauri E., Laitinen K., Salminen S. Distinct composition of gut microbiota during pregnancy in overweight and normal-weight women. Am J Clin Nutr 2008, 88:894-899.
    • (2008) Am J Clin Nutr , vol.88 , pp. 894-899
    • Collado, M.C.1    Isolauri, E.2    Laitinen, K.3    Salminen, S.4
  • 32
    • 80755152887 scopus 로고    scopus 로고
    • Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice
    • Everard A., Lazarevic V., Derrien M., Girard M., Muccioli G.G., Neyrinck A.M., et al. Responses of gut microbiota and glucose and lipid metabolism to prebiotics in genetic obese and diet-induced leptin-resistant mice. Diabetes 2011, 60:2775-2786.
    • (2011) Diabetes , vol.60 , pp. 2775-2786
    • Everard, A.1    Lazarevic, V.2    Derrien, M.3    Girard, M.4    Muccioli, G.G.5    Neyrinck, A.M.6
  • 33
    • 84866386969 scopus 로고    scopus 로고
    • Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
    • Hansen C.H., Krych L., Nielsen D.S., Vogensen F.K., Hansen L.H., Sorensen S.J., et al. Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse. Diabetologia 2012, 55:2285-2294.
    • (2012) Diabetologia , vol.55 , pp. 2285-2294
    • Hansen, C.H.1    Krych, L.2    Nielsen, D.S.3    Vogensen, F.K.4    Hansen, L.H.5    Sorensen, S.J.6
  • 34
    • 84878465280 scopus 로고    scopus 로고
    • Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
    • Everard A., Belzer C., Geurts L., Ouwerkerk J.P., Druart C., Bindels L.B., et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci U S A 2013, 110:9066-9071.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 9066-9071
    • Everard, A.1    Belzer, C.2    Geurts, L.3    Ouwerkerk, J.P.4    Druart, C.5    Bindels, L.B.6
  • 35
    • 0038005028 scopus 로고    scopus 로고
    • Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources
    • Rautio M., Eerola E., Vaisanen-Tunkelrott M.L., Molitoris D., Lawson P., Collins M.D., et al. Reclassification of Bacteroides putredinis (Weinberg et al., 1937) in a new genus Alistipes gen. nov., as Alistipes putredinis comb. nov., and description of Alistipes finegoldii sp. nov., from human sources. Syst Appl Microbiol 2003, 26:182-188.
    • (2003) Syst Appl Microbiol , vol.26 , pp. 182-188
    • Rautio, M.1    Eerola, E.2    Vaisanen-Tunkelrott, M.L.3    Molitoris, D.4    Lawson, P.5    Collins, M.D.6
  • 38
    • 55249108031 scopus 로고    scopus 로고
    • Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont
    • Martens E.C., Chiang H.C., Gordon J.I. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. Cell Host Microbe 2008, 4:447-457.
    • (2008) Cell Host Microbe , vol.4 , pp. 447-457
    • Martens, E.C.1    Chiang, H.C.2    Gordon, J.I.3
  • 39
    • 84907228243 scopus 로고    scopus 로고
    • Efficient utilization of complex N-linked glycans is a selective advantage for Bacteroides fragilis in extraintestinal infections
    • Cao Y., Rocha E.R., Smith C.J. Efficient utilization of complex N-linked glycans is a selective advantage for Bacteroides fragilis in extraintestinal infections. Proc Natl Acad Sci U S A 2014, 111:12901-12906.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. 12901-12906
    • Cao, Y.1    Rocha, E.R.2    Smith, C.J.3
  • 40
    • 84879084988 scopus 로고    scopus 로고
    • Diet shapes the ability of human intestinal microbiota to degrade phytate-in vitro studies
    • Markiewicz L.H., Honke J., Haros M., Swiatecka D., Wroblewska B. Diet shapes the ability of human intestinal microbiota to degrade phytate-in vitro studies. J Appl Microbiol 2013, 115:247-259.
    • (2013) J Appl Microbiol , vol.115 , pp. 247-259
    • Markiewicz, L.H.1    Honke, J.2    Haros, M.3    Swiatecka, D.4    Wroblewska, B.5
  • 41
    • 84896734812 scopus 로고    scopus 로고
    • A bacterial homolog of a eukaryotic inositol phosphate signaling enzyme mediates cross-kingdom dialog in the mammalian gut
    • Stentz R., Osborne S., Horn N., Li A.W., Hautefort I., Bongaerts R., et al. A bacterial homolog of a eukaryotic inositol phosphate signaling enzyme mediates cross-kingdom dialog in the mammalian gut. Cell Rep 2014, 6:646-656.
    • (2014) Cell Rep , vol.6 , pp. 646-656
    • Stentz, R.1    Osborne, S.2    Horn, N.3    Li, A.W.4    Hautefort, I.5    Bongaerts, R.6
  • 42
    • 0035839126 scopus 로고    scopus 로고
    • Epigenetic reprogramming in mammalian development
    • Reik W., Dean W., Walter J. Epigenetic reprogramming in mammalian development. Science 2001, 293:1089-1093.
    • (2001) Science , vol.293 , pp. 1089-1093
    • Reik, W.1    Dean, W.2    Walter, J.3
  • 43
    • 0036733675 scopus 로고    scopus 로고
    • Chromatin modification and epigenetic reprogramming in mammalian development
    • Li E. Chromatin modification and epigenetic reprogramming in mammalian development. Nat Rev Genet 2002, 3:662-673.
    • (2002) Nat Rev Genet , vol.3 , pp. 662-673
    • Li, E.1
  • 44
    • 0035704552 scopus 로고    scopus 로고
    • The thrifty phenotype hypothesis
    • Hales C.N., Barker D.J. The thrifty phenotype hypothesis. Br Med Bull 2001, 60:5-20.
    • (2001) Br Med Bull , vol.60 , pp. 5-20
    • Hales, C.N.1    Barker, D.J.2
  • 45
    • 38849090146 scopus 로고    scopus 로고
    • The thrifty epigenotype: an acquired and heritable predisposition for obesity and diabetes?
    • Stoger R. The thrifty epigenotype: an acquired and heritable predisposition for obesity and diabetes?. Bioessays 2008, 30:156-166.
    • (2008) Bioessays , vol.30 , pp. 156-166
    • Stoger, R.1
  • 46


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.