메뉴 건너뛰기




Volumn 290, Issue 5, 2015, Pages 1805-1818

Genome-wide analysis of the family 1 glycosyltransferases in cotton

Author keywords

Cotton; Genome wide; PSPG; UDP glycosyltransferase

Indexed keywords

AMINO ACID; FAMILY 1 GLYCOSYLTRANSFERASE; GLYCOSYLTRANSFERASE; PLANT RNA; UNCLASSIFIED DRUG;

EID: 84941995557     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-015-1040-8     Document Type: Article
Times cited : (48)

References (44)
  • 1
    • 15544364507 scopus 로고    scopus 로고
    • Genomics-based selection and functional characterization of glycosyltransferases from the model legume Medicago truncatula
    • COI: 1:CAS:528:DC%2BD2MXisleitrY%3D
    • Achnine L, Huhman DV, Farag MA, Sumner LW, Blount JW, Dixon RA (2005) Genomics-based selection and functional characterization of glycosyltransferases from the model legume Medicago truncatula. Plant J 41(6):875–887
    • (2005) Plant J , vol.41 , Issue.6 , pp. 875-887
    • Achnine, L.1    Huhman, D.V.2    Farag, M.A.3    Sumner, L.W.4    Blount, J.W.5    Dixon, R.A.6
  • 2
    • 84860621685 scopus 로고    scopus 로고
    • Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns
    • COI: 1:CAS:528:DC%2BC38XhslGqu7jN
    • Barvkar VT, Pardeshi VC, Kale SM, Kadoo NY, Gupta VS (2012) Phylogenomic analysis of UDP glycosyltransferase 1 multigene family in Linum usitatissimum identified genes with varied expression patterns. BMC Genom 13:175
    • (2012) BMC Genom , vol.13 , pp. 175
    • Barvkar, V.T.1    Pardeshi, V.C.2    Kale, S.M.3    Kadoo, N.Y.4    Gupta, V.S.5
  • 3
    • 0036545474 scopus 로고    scopus 로고
    • A multigene family of glycosyltransferases in a model plant, Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BD38XjvVKgsbw%3D
    • Bowles D (2002) A multigene family of glycosyltransferases in a model plant, Arabidopsis thaliana. Biochem Soc Trans 30(2):301–306
    • (2002) Biochem Soc Trans , vol.30 , Issue.2 , pp. 301-306
    • Bowles, D.1
  • 4
    • 18144379937 scopus 로고    scopus 로고
    • Glycosyltransferases: managers of small molecules
    • COI: 1:CAS:528:DC%2BD2MXjslKnsbY%3D
    • Bowles D, Isayenkova J, Lim E-K, Poppenberger B (2005) Glycosyltransferases: managers of small molecules. Curr Opin Plant Biol 8(3):254–263
    • (2005) Curr Opin Plant Biol , vol.8 , Issue.3 , pp. 254-263
    • Bowles, D.1    Isayenkova, J.2    Lim, E.-K.3    Poppenberger, B.4
  • 5
    • 84859165041 scopus 로고    scopus 로고
    • A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land
    • COI: 1:CAS:528:DC%2BC38XkvFamurs%3D
    • Caputi L, Malnoy M, Goremykin V, Nikiforova S, Martens S (2012) A genome-wide phylogenetic reconstruction of family 1 UDP-glycosyltransferases revealed the expansion of the family during the adaptation of plants to life on land. Plant J 69(6):1030–1042
    • (2012) Plant J , vol.69 , Issue.6 , pp. 1030-1042
    • Caputi, L.1    Malnoy, M.2    Goremykin, V.3    Nikiforova, S.4    Martens, S.5
  • 6
    • 47049087906 scopus 로고    scopus 로고
    • A kinetic analysis of regiospecific glucosylation by two glycosyltransferases of Arabidopsis thaliana: domain swapping to introduce new activities
    • COI: 1:CAS:528:DC%2BD1cXmsFersro%3D
    • Cartwright AM, Lim EK, Kleanthous C, Bowles DJ (2008) A kinetic analysis of regiospecific glucosylation by two glycosyltransferases of Arabidopsis thaliana: domain swapping to introduce new activities. J Biol Chem 283(23):15724–15731
    • (2008) J Biol Chem , vol.283 , Issue.23 , pp. 15724-15731
    • Cartwright, A.M.1    Lim, E.K.2    Kleanthous, C.3    Bowles, D.J.4
  • 7
    • 0037466315 scopus 로고    scopus 로고
    • An evolving hierarchical family classification for glycosyltransferases
    • COI: 1:CAS:528:DC%2BD3sXislehtr4%3D
    • Coutinho PM, Deleury E, Davies GJ, Henrissat B (2003) An evolving hierarchical family classification for glycosyltransferases. J Mol Biol 328(2):307–317
    • (2003) J Mol Biol , vol.328 , Issue.2 , pp. 307-317
    • Coutinho, P.M.1    Deleury, E.2    Davies, G.J.3    Henrissat, B.4
  • 8
    • 0033214408 scopus 로고    scopus 로고
    • Flavonoids and isoflavonoids—a gold mine for metabolic engineering
    • Dixon RA, Steele CL (1999) Flavonoids and isoflavonoids—a gold mine for metabolic engineering. Trends Plant Sci 4(10):394–400
    • (1999) Trends Plant Sci , vol.4 , Issue.10 , pp. 394-400
    • Dixon, R.A.1    Steele, C.L.2
  • 9
    • 27644476269 scopus 로고    scopus 로고
    • Plant secondary metabolism glycosyltransferases: the emerging functional analysis
    • COI: 1:CAS:528:DC%2BD2MXhtFOmtLzF
    • Gachon CM, Langlois-Meurinne M, Saindrenan P (2005) Plant secondary metabolism glycosyltransferases: the emerging functional analysis. Trends Plant Sci 10(11):542–549
    • (2005) Trends Plant Sci , vol.10 , Issue.11 , pp. 542-549
    • Gachon, C.M.1    Langlois-Meurinne, M.2    Saindrenan, P.3
  • 10
    • 84884522500 scopus 로고    scopus 로고
    • A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.)
    • COI: 1:CAS:528:DC%2BC3sXhsFeku73F
    • Gilbert MK, Bland JM, Shockey JM, Cao H, Hinchliffe DJ, Fang DD, Naoumkina M (2013) A transcript profiling approach reveals an abscisic acid-specific glycosyltransferase (UGT73C14) induced in developing fiber of Ligon lintless-2 mutant of cotton (Gossypium hirsutum L.). PLoS One 8(9):e75268
    • (2013) PLoS One , vol.8 , Issue.9 , pp. 75268
    • Gilbert, M.K.1    Bland, J.M.2    Shockey, J.M.3    Cao, H.4    Hinchliffe, D.J.5    Fang, D.D.6    Naoumkina, M.7
  • 11
    • 84903440684 scopus 로고    scopus 로고
    • GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis
    • Glémin S, Clément Y, David J, Ressayre A (2014) GC content evolution in coding regions of angiosperm genomes: a unifying hypothesis. Trends Genet 30(7):263–270
    • (2014) Trends Genet , vol.30 , Issue.7 , pp. 263-270
    • Glémin, S.1    Clément, Y.2    David, J.3    Ressayre, A.4
  • 12
    • 0035408813 scopus 로고    scopus 로고
    • The arms race is ancient history in Arabidopsis, the wildflower
    • COI: 1:CAS:528:DC%2BD3MXltVCksLs%3D
    • Holub EB (2001) The arms race is ancient history in Arabidopsis, the wildflower. Nat Rev Genet 2(7):516–527
    • (2001) Nat Rev Genet , vol.2 , Issue.7 , pp. 516-527
    • Holub, E.B.1
  • 13
    • 0028312482 scopus 로고
    • Multiple secondary plant product UDP-glucose glucosyltransferase genes expressed in cassava (Manihot esculenta Crantz) cotyledons
    • COI: 1:CAS:528:DyaK2MXns1KlsLw%3D
    • Hughes J, Hughes MA (1994) Multiple secondary plant product UDP-glucose glucosyltransferase genes expressed in cassava (Manihot esculenta Crantz) cotyledons. DNA Seq 5(1):41–49
    • (1994) DNA Seq , vol.5 , Issue.1 , pp. 41-49
    • Hughes, J.1    Hughes, M.A.2
  • 14
    • 0015743597 scopus 로고
    • Genetic nomenclature in cotton
    • Kohel R (1973) Genetic nomenclature in cotton. J Hered 64(5):291–295
    • (1973) J Hered , vol.64 , Issue.5 , pp. 291-295
    • Kohel, R.1
  • 16
    • 49449087287 scopus 로고    scopus 로고
    • Glycosyltransferases: structures, functions, and mechanisms
    • COI: 1:CAS:528:DC%2BD1cXos1ekurY%3D
    • Lairson L, Henrissat B, Davies G, Withers S (2008) Glycosyltransferases: structures, functions, and mechanisms. Biochemistry 77(1):521
    • (2008) Biochemistry , vol.77 , Issue.1 , pp. 521
    • Lairson, L.1    Henrissat, B.2    Davies, G.3    Withers, S.4
  • 17
    • 0035830930 scopus 로고    scopus 로고
    • Phylogenetic analysis of the UDP-glycosyltransferase multigene family of Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BD3MXht1GnsLk%3D
    • Li Y, Baldauf S, Lim EK, Bowles DJ (2001) Phylogenetic analysis of the UDP-glycosyltransferase multigene family of Arabidopsis thaliana. J Biol Chem 276(6):4338–4343
    • (2001) J Biol Chem , vol.276 , Issue.6 , pp. 4338-4343
    • Li, Y.1    Baldauf, S.2    Lim, E.K.3    Bowles, D.J.4
  • 18
    • 0141519279 scopus 로고    scopus 로고
    • OrthoMCL: identification of ortholog groups for eukaryotic genomes
    • COI: 1:CAS:528:DC%2BD3sXnslKhtLk%3D
    • Li L, Stoeckert CJ Jr, Roos DS (2003) OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 13(9):2178–2189
    • (2003) Genome Res , vol.13 , Issue.9 , pp. 2178-2189
    • Li, L.1    Stoeckert, C.J.2    Roos, D.S.3
  • 20
    • 84903751907 scopus 로고    scopus 로고
    • Tuning bio-inspired skin-core structure of nascent fiber via interplay of polymer phase transitions
    • COI: 1:CAS:528:DC%2BC2cXhtFSgtrbI
    • Liu Q, Gao H, Zha L, Hu Z, Ma Y, Yu M, Chen L, Hu W (2014) Tuning bio-inspired skin-core structure of nascent fiber via interplay of polymer phase transitions. Phys Chem Chem Phys 16(29):15152–15157
    • (2014) Phys Chem Chem Phys , vol.16 , Issue.29 , pp. 15152-15157
    • Liu, Q.1    Gao, H.2    Zha, L.3    Hu, Z.4    Ma, Y.5    Yu, M.6    Chen, L.7    Hu, W.8
  • 21
    • 84904767185 scopus 로고    scopus 로고
    • Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton
    • Ma Q, Wu M, Pei W, Li H, Li X, Zhang J, Yu J, Yu S (2014) Quantitative phosphoproteomic profiling of fiber differentiation and initiation in a fiberless mutant of cotton. BMC Genom 15:466
    • (2014) BMC Genom , vol.15 , pp. 466
    • Ma, Q.1    Wu, M.2    Pei, W.3    Li, H.4    Li, X.5    Zhang, J.6    Yu, J.7    Yu, S.8
  • 23
    • 62349122684 scopus 로고    scopus 로고
    • Substrate specificity of plant UDP-dependent glycosyltransferases predicted from crystal structures and homology modeling
    • COI: 1:CAS:528:DC%2BD1MXjsFSjsr4%3D
    • Osmani SA, Bak S, Moller BL (2009) Substrate specificity of plant UDP-dependent glycosyltransferases predicted from crystal structures and homology modeling. Phytochemistry 70(3):325–347
    • (2009) Phytochemistry , vol.70 , Issue.3 , pp. 325-347
    • Osmani, S.A.1    Bak, S.2    Moller, B.L.3
  • 24
    • 0037309606 scopus 로고    scopus 로고
    • On the origin of family 1 plant glycosyltransferases
    • COI: 1:CAS:528:DC%2BD3sXhs1WmurY%3D
    • Paquette S, Moller BL, Bak S (2003) On the origin of family 1 plant glycosyltransferases. Phytochemistry 62(3):399–413
    • (2003) Phytochemistry , vol.62 , Issue.3 , pp. 399-413
    • Paquette, S.1    Moller, B.L.2    Bak, S.3
  • 26
    • 78751591032 scopus 로고    scopus 로고
    • How cotton fibers elongate: a tale of linear cell-growth mode
    • COI: 1:CAS:528:DC%2BC3MXpvFWrtQ%3D%3D
    • Qin YM, Zhu YX (2011) How cotton fibers elongate: a tale of linear cell-growth mode. Curr Opin Plant Biol 14(1):106–111
    • (2011) Curr Opin Plant Biol , vol.14 , Issue.1 , pp. 106-111
    • Qin, Y.M.1    Zhu, Y.X.2
  • 27
    • 4344560985 scopus 로고    scopus 로고
    • Position-associated GC asymmetry of gene duplicates
    • COI: 1:CAS:528:DC%2BD2cXns1alu7w%3D
    • Rodin SN, Parkhomchuk DV (2004) Position-associated GC asymmetry of gene duplicates. J Mol Evol 59(3):372–384
    • (2004) J Mol Evol , vol.59 , Issue.3 , pp. 372-384
    • Rodin, S.N.1    Parkhomchuk, D.V.2
  • 30
    • 84862299158 scopus 로고    scopus 로고
    • Patterns and evolution of nucleotide landscapes in seed plants
    • COI: 1:CAS:528:DC%2BC38XoslCrt7Y%3D
    • Serres-Giardi L, Belkhir K, David J, Glemin S (2012) Patterns and evolution of nucleotide landscapes in seed plants. Plant Cell 24(4):1379–1397
    • (2012) Plant Cell , vol.24 , Issue.4 , pp. 1379-1397
    • Serres-Giardi, L.1    Belkhir, K.2    David, J.3    Glemin, S.4
  • 31
    • 43849112342 scopus 로고    scopus 로고
    • Characterization and expression analysis of two cotton genes encoding putative UDP-glycosyltransferases
    • Tai FJ, Wang XL, Xu WL, Li XB (2008) Characterization and expression analysis of two cotton genes encoding putative UDP-glycosyltransferases. Mol Biol (Mosk) 42(1):50–58
    • (2008) Mol Biol (Mosk) , vol.42 , Issue.1 , pp. 50-58
    • Tai, F.J.1    Wang, X.L.2    Xu, W.L.3    Li, X.B.4
  • 32
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: molecular evolutionary genetics analysis version 6.0
    • COI: 1:CAS:528:DC%2BC3sXhvVKhurzP
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S (2013) MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol 30(12):2725–2729
    • (2013) Mol Biol Evol , vol.30 , Issue.12 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 33
    • 83055192078 scopus 로고    scopus 로고
    • Differential expression in RNA-seq: a matter of depth
    • COI: 1:CAS:528:DC%2BC3MXhs1Wlur3M
    • Tarazona S, Garcia-Alcalde F, Dopazo J, Ferrer A, Conesa A (2011) Differential expression in RNA-seq: a matter of depth. Genome Res 21(12):2213–2223
    • (2011) Genome Res , vol.21 , Issue.12 , pp. 2213-2223
    • Tarazona, S.1    Garcia-Alcalde, F.2    Dopazo, J.3    Ferrer, A.4    Conesa, A.5
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • COI: 1:CAS:528:DyaK2MXitlSgu74%3D
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673–4680
    • (1994) Nucleic Acids Res , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0033799536 scopus 로고    scopus 로고
    • Glycosyltransferases in plant natural product synthesis: characterization of a supergene family
    • COI: 1:STN:280:DC%2BD3M%2FjslKhsQ%3D%3D
    • Vogt T, Jones P (2000) Glycosyltransferases in plant natural product synthesis: characterization of a supergene family. Trends Plant Sci 5(9):380–386
    • (2000) Trends Plant Sci , vol.5 , Issue.9 , pp. 380-386
    • Vogt, T.1    Jones, P.2
  • 36
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • COI: 1:CAS:528:DC%2BD38XktlOntrw%3D
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93(1):77–78
    • (2002) J Hered , vol.93 , Issue.1 , pp. 77-78
    • Voorrips, R.E.1
  • 37
    • 77954085198 scopus 로고    scopus 로고
    • Glycosyltransferases: key players involved in the modification of plant secondary metabolites
    • COI: 1:CAS:528:DC%2BC3cXhsFaltL8%3D
    • Wang J, Hou B (2009) Glycosyltransferases: key players involved in the modification of plant secondary metabolites. Front Biol China 4(1):39–46
    • (2009) Front Biol China , vol.4 , Issue.1 , pp. 39-46
    • Wang, J.1    Hou, B.2
  • 38
    • 84862832432 scopus 로고    scopus 로고
    • UGT87A2, an Arabidopsis glycosyltransferase, regulates flowering time via FLOWERING LOCUS C
    • COI: 1:CAS:528:DC%2BC38Xot1yktrk%3D
    • Wang B, Jin SH, Hu HQ, Sun YG, Wang YW, Han P, Hou BK (2012a) UGT87A2, an Arabidopsis glycosyltransferase, regulates flowering time via FLOWERING LOCUS C. New Phytol 194(3):666–675
    • (2012) New Phytol , vol.194 , Issue.3 , pp. 666-675
    • Wang, B.1    Jin, S.H.2    Hu, H.Q.3    Sun, Y.G.4    Wang, Y.W.5    Han, P.6    Hou, B.K.7
  • 41
    • 36148975768 scopus 로고    scopus 로고
    • Polyploidy and the evolutionary history of cotton
    • Wendel JF, Cronn RC (2003) Polyploidy and the evolutionary history of cotton. Adv Agron 78:139–186
    • (2003) Adv Agron , vol.78 , pp. 139-186
    • Wendel, J.F.1    Cronn, R.C.2
  • 43
    • 79953247573 scopus 로고    scopus 로고
    • An evolutionary view of functional diversity in family 1 glycosyltransferases
    • COI: 1:CAS:528:DC%2BC3MXlsVKnu7g%3D
    • Yonekura-Sakakibara K, Hanada K (2011) An evolutionary view of functional diversity in family 1 glycosyltransferases. Plant J 66(1):182–193
    • (2011) Plant J , vol.66 , Issue.1 , pp. 182-193
    • Yonekura-Sakakibara, K.1    Hanada, K.2
  • 44
    • 84937926095 scopus 로고    scopus 로고
    • Upregulation and diverse roles of TRPC3 and TRPC6 in synaptic reorganization of the mossy fiber pathway in temporal lobe epilepsy
    • Zeng C, Zhou P, Jiang T, Yuan C, Ma Y, Feng L, Liu R, Tang W, Long X, Xiao B, Tian F (2014) Upregulation and diverse roles of TRPC3 and TRPC6 in synaptic reorganization of the mossy fiber pathway in temporal lobe epilepsy. Mol Neurobiol. doi:10.1007/s12035-014-8871-x
    • (2014) Mol Neurobiol
    • Zeng, C.1    Zhou, P.2    Jiang, T.3    Yuan, C.4    Ma, Y.5    Feng, L.6    Liu, R.7    Tang, W.8    Long, X.9    Xiao, B.10    Tian, F.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.