-
1
-
-
84900535804
-
Dynamics and associations of microbial community types across the human body
-
Ding, T., Schloss, P. D. Dynamics and associations of microbial community types across the human body. Nature 509, 357-360 (2014).
-
(2014)
Nature
, vol.509
, pp. 357-360
-
-
Ding, T.1
Schloss, P.D.2
-
2
-
-
84866174523
-
Genomic approaches to studying the human microbiota
-
Weinstock, G. M. Genomic approaches to studying the human microbiota. Nature 489, 250-256 (2012).
-
(2012)
Nature
, vol.489
, pp. 250-256
-
-
Weinstock, G.M.1
-
3
-
-
84904569753
-
Conducting a microbiome study
-
Goodrich, J. K. et al. Conducting a microbiome study. Cell 158, 250-262 (2014).
-
(2014)
Cell
, vol.158
, pp. 250-262
-
-
Goodrich, J.K.1
-
4
-
-
84896089558
-
The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing
-
Kennedy, N. A. et al. The impact of different DNA extraction kits and laboratories upon the assessment of human gut microbiota composition by 16S rRNA gene sequencing. PloS one 9, e88982 (2014).
-
(2014)
PloS One
, vol.9
, pp. e88982
-
-
Kennedy, N.A.1
-
5
-
-
84861011960
-
Diversity of bifidobacteria within the infant gut microbiota
-
Turroni, F. et al. Diversity of bifidobacteria within the infant gut microbiota. PloS one 7, e36957 (2012).
-
(2012)
PloS One
, vol.7
, pp. e36957
-
-
Turroni, F.1
-
6
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford, K. E., Chuzhanova, N. A., Fry, J. C., Jones, A. J., Weightman, A. J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl. Environ. Microbiol. 71, 7724-7736 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
7
-
-
79952006773
-
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
-
Haas, B. J. et al. Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome res. 21, 494-504 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 494-504
-
-
Haas, B.J.1
-
8
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., Knight, R. UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27, 2194-2200 (2011).
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
9
-
-
83355173006
-
Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies
-
Schloss, P. D., Gevers, D., Westcott, S. L. Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. PloS one 6, e27310 (2011).
-
(2011)
PloS One
, vol.6
, pp. e27310
-
-
Schloss, P.D.1
Gevers, D.2
Westcott, S.L.3
-
10
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Polz, M. F., Cavanaugh, C. M. Bias in template-to-product ratios in multitemplate PCR. Appl. Environ. Microbiol. 64, 3724-3730 (1998).
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 3724-3730
-
-
Polz, M.F.1
Cavanaugh, C.M.2
-
11
-
-
80052822737
-
Emulsion PCR: A high efficient way of PCR amplification of random DNA libraries in aptamer selection
-
Shao, K. et al. Emulsion PCR: a high efficient way of PCR amplification of random DNA libraries in aptamer selection. PloS one 6, e24910 (2011).
-
(2011)
PloS One
, vol.6
, pp. e24910
-
-
Shao, K.1
-
12
-
-
0042307371
-
Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations
-
Dressman, D., Yan, H., Traverso, G., Kinzler, K. W., Vogelstein, B. Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations. Proc. Natl. Acad. Sci. USA 100, 8817-8822 (2003).
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 8817-8822
-
-
Dressman, D.1
Yan, H.2
Traverso, G.3
Kinzler, K.W.4
Vogelstein, B.5
-
13
-
-
84862192626
-
Evaluation of 16S rDNA-based community profiling for human microbiome research
-
Jumpstart Consortium Human Microbiome Project Data Generation Working, G.
-
Jumpstart Consortium Human Microbiome Project Data Generation Working, G. Evaluation of 16S rDNA-based community profiling for human microbiome research. PloS one 7, e39315 (2012).
-
(2012)
PloS One
, vol.7
, pp. e39315
-
-
-
14
-
-
83155178360
-
Barcoded primers used in multiplex amplicon pyrosequencing bias amplification
-
Berry, D., Ben Mahfoudh, K., Wagner, M., Loy, A. Barcoded primers used in multiplex amplicon pyrosequencing bias amplification. Appl. Environ. Microbiol. 77, 7846-7849 (2011).
-
(2011)
Appl. Environ. Microbiol.
, vol.77
, pp. 7846-7849
-
-
Berry, D.1
Ben Mahfoudh, K.2
Wagner, M.3
Loy, A.4
-
15
-
-
29144445330
-
PCR-induced sequence artifacts and bias: Insights from comparison of two 16S rRNA clone libraries constructed from the same sample
-
Acinas, S. G., Sarma-Rupavtarm, R., Klepac-Ceraj, V., Polz, M. F. PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample. Appl. Environ. Microbiol. 71, 8966-8969 (2005).
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 8966-8969
-
-
Acinas, S.G.1
Sarma-Rupavtarm, R.2
Klepac-Ceraj, V.3
Polz, M.F.4
-
16
-
-
84884904719
-
UPARSE: Highly accurate OTU sequences from microbial amplicon reads
-
Edgar, R. C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat. Methods 10, 996-998 (2013).
-
(2013)
Nat. Methods
, vol.10
, pp. 996-998
-
-
Edgar, R.C.1
-
17
-
-
33745351130
-
Amplification of complex gene libraries by emulsion PCR
-
Williams, R. et al. Amplification of complex gene libraries by emulsion PCR. Nat. Methods 3, 545-550 (2006).
-
(2006)
Nat. Methods
, vol.3
, pp. 545-550
-
-
Williams, R.1
-
18
-
-
0036708344
-
Quantitative multiprobe PCR assay for simultaneous detection and identification to species level of bacterial pathogens
-
Yang, S. et al. Quantitative multiprobe PCR assay for simultaneous detection and identification to species level of bacterial pathogens. J. Clin. Microbiol. 40, 3449-3454 (2002).
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 3449-3454
-
-
Yang, S.1
-
19
-
-
72949107142
-
Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss, P. D. et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl. Environ. Microbiol. 75, 7537-7541 (2009).
-
(2009)
Appl. Environ. Microbiol.
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
|