메뉴 건너뛰기




Volumn 31, Issue 14, 2015, Pages 2406-2408

Multiscale reaction-diffusion simulations with Smoldyn

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; COMPUTER SIMULATION; DIFFUSION; METABOLISM; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; SOFTWARE;

EID: 84941670344     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btv149     Document Type: Article
Times cited : (41)

References (15)
  • 2
    • 33748520215 scopus 로고    scopus 로고
    • Stochastic simulation of chemical reactions with spatial resolution and single molecule detail
    • Andrews, S. S. And Bray, D. (2004) Stochastic simulation of chemical reactions with spatial resolution and single molecule detail. Phys. Biol. , 1, 137.
    • (2004) Phys. Biol. , vol.1 , pp. 137
    • Andrews, S.S.1    Bray, D.2
  • 3
    • 77950833499 scopus 로고    scopus 로고
    • Detailed simulations of cell biology with smoldyn 2. 1
    • Andrews, S. S. et al. (2010) Detailed simulations of cell biology with smoldyn 2. 1. PLoS Comput. Biol. , 6, e1000705.
    • (2010) PLoS Comput. Biol. , vol.6 , pp. e1000705
    • Andrews, S.S.1
  • 4
    • 20844455677 scopus 로고    scopus 로고
    • Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases
    • Elf, J. And Ehrenberg, M. (2004) Spontaneous separation of bi-stable biochemical systems into spatial domains of opposite phases. Syst. Biol. , 1, 230-236.
    • (2004) Syst. Biol. , vol.1 , pp. 230-236
    • Elf, J.1    Ehrenberg, M.2
  • 5
    • 84899536809 scopus 로고    scopus 로고
    • Multiscale stochastic reaction-diffusion modeling: Application to actin dynamics in filopodia
    • Erban, R. et al. (2014) Multiscale stochastic reaction-diffusion modeling: Application to actin dynamics in filopodia. Bull. Math. Biol. , 76, 799-818.
    • (2014) Bull. Math. Biol. , vol.76 , pp. 799-818
    • Erban, R.1
  • 6
    • 33745591124 scopus 로고    scopus 로고
    • Noise-induced min phenotypes in e
    • Fange, D. And Elf, J. (2006) Noise-induced min phenotypes in e. coli. PLoS Comput. Biol. , 2, e80.
    • (2006) Coli. PLoS Comput. Biol. , vol.2 , pp. e80
    • Fange, D.1    Elf, J.2
  • 7
    • 84860779000 scopus 로고    scopus 로고
    • Two Regime Method for optimizing stochastic reaction-diffusion simulations
    • Flegg, M. B. et al. (2012) Two Regime Method for optimizing stochastic reaction-diffusion simulations. J. R. Soc. Interface, 9, 859-868.
    • (2012) J. R. Soc. Interface , vol.9 , pp. 859-868
    • Flegg, M.B.1
  • 8
    • 84881487127 scopus 로고    scopus 로고
    • Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release
    • Flegg, M. B. et al. (2013) Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release. J. Chem. Phys. , 138, 154103.
    • (2013) J. Chem. Phys. , vol.138 , pp. 154103
    • Flegg, M.B.1
  • 9
    • 84903610703 scopus 로고    scopus 로고
    • Analysis of the two-regime method on square meshes
    • Flegg, M. B. et al. (2014) Analysis of the two-regime method on square meshes. SIAM J. Sci. Comput. , 36, B561-B588.
    • (2014) SIAM J. Sci. Comput. , vol.36 , pp. B561-B588
    • Flegg, M.B.1
  • 10
    • 84865694440 scopus 로고    scopus 로고
    • Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions
    • Hellander, A. et al. (2012) Coupled mesoscopic and microscopic simulation of stochastic reaction-diffusion processes in mixed dimensions. Multiscale Model. Simul. , 10, 585-611.
    • (2012) Multiscale Model. Simul. , vol.10 , pp. 585-611
    • Hellander, A.1
  • 11
    • 84866444374 scopus 로고    scopus 로고
    • Hybrid spatial gillespie and particle tracking simulation
    • Klann, M. et al. (2012) Hybrid spatial gillespie and particle tracking simulation. Bioinformatics, 28, i549-i555.
    • (2012) Bioinformatics , vol.28 , pp. i549-i555
    • Klann, M.1
  • 12
    • 84897493603 scopus 로고    scopus 로고
    • Adaptive two-regime method: Application to front propagation
    • Robinson, M. et al. (2014) Adaptive two-regime method: Application to front propagation. J. Chem. Phys. , 140, 124109.
    • (2014) J. Chem. Phys. , vol.140 , pp. 124109
    • Robinson, M.1
  • 13
    • 0142219725 scopus 로고    scopus 로고
    • Quantitative cell biology with the virtual cell
    • Slepchenko, B. M. et al. (2003) Quantitative cell biology with the virtual cell. Trends Cell Biol. , 13, 570-576.
    • (2003) Trends Cell Biol. , vol.13 , pp. 570-576
    • Slepchenko, B.M.1
  • 14
    • 77249093066 scopus 로고    scopus 로고
    • Spatio-temporal correlations can drastically change the response of a MAPK pathway
    • Takahashi, K. et al. (2010) Spatio-temporal correlations can drastically change the response of a MAPK pathway. Proc. Natl. Acad. Sci. U. S. A. , 107, 2473-2478.
    • (2010) Proc. Natl. Acad. Sci. U. S. A. , vol.107 , pp. 2473-2478
    • Takahashi, K.1
  • 15
    • 67650899090 scopus 로고    scopus 로고
    • Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics
    • Zhuravlev, P. I. And Papoian, G. A. (2009) Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics. Proc. Natl. Acad. Sci. U. S. A. , 106, 11570-11575.
    • (2009) Proc. Natl. Acad. Sci. U. S. A. , vol.106 , pp. 11570-11575
    • Zhuravlev, P.I.1    Papoian, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.