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Volumn 1, Issue 2, 2015, Pages 152-162

Transcription Factor Activity Mapping of a Tissue-Specific in Vivo Gene Regulatory Network

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA; PROTOZOAL RNA; TRANSCRIPTION FACTOR;

EID: 84941627077     PISSN: 24054712     EISSN: 24054720     Source Type: Journal    
DOI: 10.1016/j.cels.2015.08.003     Document Type: Article
Times cited : (50)

References (46)
  • 3
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • B.E. Bernstein, E. Birney, I. Dunham, E.D. Green, C. Gunter, M. Snyder ENCODE Project Consortium An integrated encyclopedia of DNA elements in the human genome Nature 489 2012 57 74
    • (2012) Nature , vol.489 , pp. 57-74
    • Bernstein, B.E.1    Birney, E.2    Dunham, I.3    Green, E.D.4    Gunter, C.5    Snyder, M.6
  • 4
    • 84924337097 scopus 로고    scopus 로고
    • Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles
    • S.M. Blazie, C. Babb, H. Wilky, A. Rawls, J.G. Park, and M. Mangone Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles BMC Biol. 13 2015 4
    • (2015) BMC Biol. , vol.13 , pp. 4
    • Blazie, S.M.1    Babb, C.2    Wilky, H.3    Rawls, A.4    Park, J.G.5    Mangone, M.6
  • 7
    • 25444508435 scopus 로고    scopus 로고
    • Oscillatory Ca2+ signaling in the isolated Caenorhabditis elegans intestine: Role of the inositol-1,4,5-trisphosphate receptor and phospholipases C beta and gamma
    • M.V. Espelt, A.Y. Estevez, X. Yin, and K. Strange Oscillatory Ca2+ signaling in the isolated Caenorhabditis elegans intestine: role of the inositol-1,4,5-trisphosphate receptor and phospholipases C beta and gamma J. Gen. Physiol. 126 2005 379 392
    • (2005) J. Gen. Physiol. , vol.126 , pp. 379-392
    • Espelt, M.V.1    Estevez, A.Y.2    Yin, X.3    Strange, K.4
  • 8
    • 67650722550 scopus 로고    scopus 로고
    • Transformation and microinjection
    • T.C. Evans Transformation and microinjection WormBook 2006 10.1895/wormbook.1.108.1 http://www.wormbook.org
    • (2006) WormBook
    • Evans, T.C.1
  • 12
    • 84876121213 scopus 로고    scopus 로고
    • Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. Elegans
    • X. Gracida, and C.R. Eckmann Fertility and germline stem cell maintenance under different diets requires nhr-114/HNF4 in C. elegans Curr. Biol. 23 2013 607 613
    • (2013) Curr. Biol. , vol.23 , pp. 607-613
    • Gracida, X.1    Eckmann, C.R.2
  • 15
    • 34247629588 scopus 로고    scopus 로고
    • Genetic reconstruction of a functional transcriptional regulatory network
    • Z. Hu, P.J. Killion, and V.R. Iyer Genetic reconstruction of a functional transcriptional regulatory network Nat. Genet. 39 2007 683 687
    • (2007) Nat. Genet. , vol.39 , pp. 683-687
    • Hu, Z.1    Killion, P.J.2    Iyer, V.R.3
  • 21
    • 0028095365 scopus 로고
    • The Caenorhabditis elegans gene lin-26 is required to specify the fates of hypodermal cells and encodes a presumptive zinc-finger transcription factor
    • M. Labouesse, S. Sookhareea, and H.R. Horvitz The Caenorhabditis elegans gene lin-26 is required to specify the fates of hypodermal cells and encodes a presumptive zinc-finger transcription factor Development 120 1994 2359 2368
    • (1994) Development , vol.120 , pp. 2359-2368
    • Labouesse, M.1    Sookhareea, S.2    Horvitz, H.R.3
  • 22
    • 0038719952 scopus 로고    scopus 로고
    • UAP56 levels affect viability and mRNA export in Caenorhabditis elegans
    • M. MacMorris, C. Brocker, and T. Blumenthal UAP56 levels affect viability and mRNA export in Caenorhabditis elegans RNA 9 2003 847 857
    • (2003) RNA , vol.9 , pp. 847-857
    • MacMorris, M.1    Brocker, C.2    Blumenthal, T.3
  • 23
    • 84875726580 scopus 로고    scopus 로고
    • Diet-induced developmental acceleration independent of TOR and insulin in C. Elegans
    • L.T. MacNeil, E. Watson, H.E. Arda, L.J. Zhu, and A.J.M. Walhout Diet-induced developmental acceleration independent of TOR and insulin in C. elegans Cell 153 2013 240 252
    • (2013) Cell , vol.153 , pp. 240-252
    • MacNeil, L.T.1    Watson, E.2    Arda, H.E.3    Zhu, L.J.4    Walhout, A.J.M.5
  • 24
    • 34547840242 scopus 로고    scopus 로고
    • Nested effects models for high-dimensional phenotyping screens
    • F. Markowetz, D. Kostka, O.G. Troyanskaya, and R. Spang Nested effects models for high-dimensional phenotyping screens Bioinformatics 23 2007 i305 i312
    • (2007) Bioinformatics , vol.23 , pp. i305-i312
    • Markowetz, F.1    Kostka, D.2    Troyanskaya, O.G.3    Spang, R.4
  • 30
    • 32244446124 scopus 로고    scopus 로고
    • Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. Elegans
    • F. Pauli, Y. Liu, Y.A. Kim, P.-J. Chen, and S.K. Kim Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans Development 133 2006 287 295
    • (2006) Development , vol.133 , pp. 287-295
    • Pauli, F.1    Liu, Y.2    Kim, Y.A.3    Chen, P.-J.4    Kim, S.K.5
  • 31
    • 0035099902 scopus 로고    scopus 로고
    • Creation of low-copy integrated transgenic lines in Caenorhabditis elegans
    • V. Praitis, E. Casey, D. Collar, and J. Austin Creation of low-copy integrated transgenic lines in Caenorhabditis elegans Genetics 157 2001 1217 1226
    • (2001) Genetics , vol.157 , pp. 1217-1226
    • Praitis, V.1    Casey, E.2    Collar, D.3    Austin, J.4
  • 32
    • 84875355699 scopus 로고    scopus 로고
    • Genome-wide microarrray analysis reveals roles for the REF-1 family member HLH-29 in ferritin synthesis and peroxide stress response
    • T.K. Quach, H.T. Chou, K. Wang, G.Z. Milledge, and C.M. Johnson Genome-wide microarrray analysis reveals roles for the REF-1 family member HLH-29 in ferritin synthesis and peroxide stress response PLoS ONE 8 2013 e59719
    • (2013) PLoS ONE , vol.8 , pp. e59719
    • Quach, T.K.1    Chou, H.T.2    Wang, K.3    Milledge, G.Z.4    Johnson, C.M.5
  • 33
    • 0038708337 scopus 로고    scopus 로고
    • C. Elegans ORFeome version 1.1: Experimental verification of the genome annotation and resource for proteome-scale protein expression
    • J. Reboul, P. Vaglio, J.F. Rual, P. Lamesch, M. Martinez, C.M. Armstrong, S. Li, L. Jacotot, N. Bertin, R. Janky, and et al. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression Nat. Genet. 34 2003 35 41
    • (2003) Nat. Genet. , vol.34 , pp. 35-41
    • Reboul, J.1    Vaglio, P.2    Rual, J.F.3    Lamesch, P.4    Martinez, M.5    Armstrong, C.M.6    Li, S.7    Jacotot, L.8    Bertin, N.9    Janky, R.10
  • 34
    • 33744976395 scopus 로고    scopus 로고
    • A compendium of Caenorhabditis elegans regulatory transcription factors: A resource for mapping transcription regulatory networks
    • J.S. Reece-Hoyes, B. Deplancke, J. Shingles, C.A. Grove, I.A. Hope, and A.J.M. Walhout A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks Genome Biol. 6 2005 R110
    • (2005) Genome Biol. , vol.6 , pp. R110
    • Reece-Hoyes, J.S.1    Deplancke, B.2    Shingles, J.3    Grove, C.A.4    Hope, I.A.5    Walhout, A.J.M.6
  • 38
    • 33646858607 scopus 로고    scopus 로고
    • A temporal map of transcription factor activity: Mef2 directly regulates target genes at all stages of muscle development
    • T. Sandmann, L.J. Jensen, J.S. Jakobsen, M.M. Karzynski, M.P. Eichenlaub, P. Bork, and E.E. Furlong A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development Dev. Cell 10 2006 797 807
    • (2006) Dev. Cell , vol.10 , pp. 797-807
    • Sandmann, T.1    Jensen, L.J.2    Jakobsen, J.S.3    Karzynski, M.M.4    Eichenlaub, M.P.5    Bork, P.6    Furlong, E.E.7
  • 40
    • 53549125545 scopus 로고    scopus 로고
    • A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb
    • S.A. Vokes, H. Ji, W.H. Wong, and A.P. McMahon A genome-scale analysis of the cis-regulatory circuitry underlying sonic hedgehog-mediated patterning of the mammalian limb Genes Dev. 22 2008 2651 2663
    • (2008) Genes Dev. , vol.22 , pp. 2651-2663
    • Vokes, S.A.1    Ji, H.2    Wong, W.H.3    McMahon, A.P.4
  • 41
    • 79953890868 scopus 로고    scopus 로고
    • What does biologically meaningful mean? A perspective on gene regulatory network validation
    • A.J.M. Walhout What does biologically meaningful mean? A perspective on gene regulatory network validation Genome Biol. 12 2011 109
    • (2011) Genome Biol. , vol.12 , pp. 109
    • Walhout, A.J.M.1
  • 43
    • 84875737727 scopus 로고    scopus 로고
    • Integration of metabolic and gene regulatory networks modulates the C. Elegans dietary response
    • E. Watson, L.T. MacNeil, H.E. Arda, L.J. Zhu, and A.J.M. Walhout Integration of metabolic and gene regulatory networks modulates the C. elegans dietary response Cell 153 2013 253 266
    • (2013) Cell , vol.153 , pp. 253-266
    • Watson, E.1    MacNeil, L.T.2    Arda, H.E.3    Zhu, L.J.4    Walhout, A.J.M.5
  • 44
    • 67749093506 scopus 로고    scopus 로고
    • DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor i
    • C.M. Whittle, E. Lazakovitch, R.M. Gronostajski, and J.D. Lieb DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I Proc. Natl. Acad. Sci. USA 106 2009 12049 12054
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 12049-12054
    • Whittle, C.M.1    Lazakovitch, E.2    Gronostajski, R.M.3    Lieb, J.D.4
  • 45
    • 33847057887 scopus 로고    scopus 로고
    • Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells
    • A. Yang, Z. Zhu, P. Kapranov, F. McKeon, G.M. Church, T.R. Gingeras, and K. Struhl Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells Mol. Cell 24 2006 593 602
    • (2006) Mol. Cell , vol.24 , pp. 593-602
    • Yang, A.1    Zhu, Z.2    Kapranov, P.3    McKeon, F.4    Church, G.M.5    Gingeras, T.R.6    Struhl, K.7
  • 46
    • 33749514099 scopus 로고    scopus 로고
    • Genomic analysis of the hierarchical structure of regulatory networks
    • H. Yu, and M. Gerstein Genomic analysis of the hierarchical structure of regulatory networks Proc. Natl. Acad. Sci. USA 103 2006 14724 14731
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 14724-14731
    • Yu, H.1    Gerstein, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.