-
1
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
Brawand, D. et al. The evolution of gene expression levels in mammalian organs. Nature 478, 343-348 (2011).
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
-
2
-
-
84871436996
-
Evolutionary dynamics of gene and isoform regulation in Mammalian tissues
-
Merkin, J., Russell, C., Chen, P. & Burge, C. B. Evolutionary dynamics of gene and isoform regulation in Mammalian tissues. Science 338, 1593-1599 (2012).
-
(2012)
Science
, vol.338
, pp. 1593-1599
-
-
Merkin, J.1
Russell, C.2
Chen, P.3
Burge, C.B.4
-
3
-
-
84871410405
-
The evolutionary landscape of alternative splicing in vertebrate species
-
Barbosa-Morais, N. L. et al. The evolutionary landscape of alternative splicing in vertebrate species. Science 338, 1587-1593 (2012).
-
(2012)
Science
, vol.338
, pp. 1587-1593
-
-
Barbosa-Morais, N.L.1
-
4
-
-
84860903672
-
Developmental milestones punctuate gene expression in the Caenorhabditis embryo
-
Levin, M., Hashimshony, T., Wagner, F. & Yanai, I. Developmental milestones punctuate gene expression in the Caenorhabditis embryo. Dev. Cell 22, 1101-1108 (2012).
-
(2012)
Dev. Cell
, vol.22
, pp. 1101-1108
-
-
Levin, M.1
Hashimshony, T.2
Wagner, F.3
Yanai, I.4
-
5
-
-
78650120369
-
Gene expression divergence recapitulates the developmental hourglass model
-
Kalinka, A. T. et al. Gene expression divergence recapitulates the developmental hourglass model. Nature 468, 811-814 (2010).
-
(2010)
Nature
, vol.468
, pp. 811-814
-
-
Kalinka, A.T.1
-
6
-
-
77958068954
-
Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes
-
Simola, D. F., Francis, C., Sniegowski, P. D.&Kim, J.Heterochronic evolution reveals modular timing changes in budding yeast transcriptomes. Genome Biol. 11, R105 (2010).
-
(2010)
Genome Biol.
, vol.11
-
-
Simola, D.F.1
Francis, C.2
Sniegowski, P.D.3
Kim, J.4
-
7
-
-
0028288693
-
Intron definition in splicing of small Drosophila introns
-
Talerico, M. & Berget, S. M. Intron definition in splicing of small Drosophila introns. Mol. Cell. Biol. 14, 3434-3445 (1994).
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 3434-3445
-
-
Talerico, M.1
Berget, S.M.2
-
8
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali, S. et al. Landscape of transcription in human cells. Nature 489, 101-108 (2012).
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
-
9
-
-
79551575924
-
Prediction and characterization of noncoding RNAs in C. Elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data
-
Lu, Z. J. et al. Prediction and characterization of noncoding RNAs in C. Elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data. Genome Res. 21, 276-285 (2011).
-
(2011)
Genome Res.
, vol.21
, pp. 276-285
-
-
Lu, Z.J.1
-
10
-
-
84907263788
-
Comparative analysis of regulatory information and circuits across distant species
-
Boyle, A. P. et al.Comparative analysis of regulatory information and circuits across distant species. Nature http://dx.doi.org/10.1038/nature13668 (this issue).
-
Nature
-
-
Boyle, A.P.1
-
11
-
-
78650410139
-
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
-
Gerstein, M. B. Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330, 1775-1787 (2010).
-
(2010)
Science
, vol.330
, pp. 1775-1787
-
-
Gerstein, M.B.1
-
12
-
-
85067737565
-
Identification of functional elements and regulatory circuits by DrosophilamodENCODE
-
TodENCODE Consortium, et al
-
modENCODE Consortium, et al. Identification of functional elements and regulatory circuits by DrosophilamodENCODE. Science 330, 1798-1797 (2010).
-
(2010)
Science
, vol.330
, pp. 1798-1797
-
-
-
13
-
-
85067708435
-
ModENCODE and ENCODE resources for analysis of metazoan chromatin organization
-
Ho, J. W. K. et al. modENCODE and ENCODE resources for analysis of metazoan chromatin organization. Nature http://dx.doi.org/10.1038/nature13497 (this issue).
-
Nature
-
-
Ho, J.W.K.1
-
14
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart, J. M., Segal, E., Koller, D.& Kim, S. K. A gene-coexpression network for global discovery of conserved genetic modules. Science 302, 249-255 (2003).
-
(2003)
Science
, vol.302
, pp. 249-255
-
-
Stuart, J.M.1
Segal, E.2
Koller, D.3
Kim, S.K.4
-
15
-
-
26444479778
-
Optimization by simulated annealing
-
Kirkpatrick, S., Gelatt, C. D., Jr& Vecchi, M. P. Optimization by simulated annealing. Science 220, 671-680 (1983).
-
(1983)
Science
, vol.220
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt Jr., C.D.2
Vecchi, M.P.3
-
16
-
-
37649031573
-
Detecting fuzzy community structures in complex networks with a Potts model
-
Reichardt, J. & Bornholdt, S. Detecting fuzzy community structures in complex networks with a Potts model. Phys. Rev. Lett. 93, 218701 (2004).
-
(2004)
Phys. Rev. Lett.
, vol.93
, pp. 218701
-
-
Reichardt, J.1
Bornholdt, S.2
-
17
-
-
78650141540
-
A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns
-
Domazet-Los?o, T. & Tautz, D. A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns. Nature 468, 815-818 (2010).
-
(2010)
Nature
, vol.468
, pp. 815-818
-
-
Domazet-Loso, T.1
Tautz, D.2
-
18
-
-
77649246145
-
Histone modification levels are predictive for gene expression
-
Karlić, R., Chung, H.-R., Lasserre, J., Vlahovicek, K. & Vingron, M. Histone modification levels are predictive for gene expression. Proc. Natl Acad. Sci. USA 107, 2926-2931 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 2926-2931
-
-
Karlić, R.1
Chung, H.-R.2
Lasserre, J.3
Vlahovicek, K.4
Vingron, M.5
-
19
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium
-
ENCODE Project Consortium. An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74 (2012).
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
20
-
-
84964315999
-
OrthoClust: An orthology-based network framework for clustering data across multiple species
-
Yan, K. K., Wang, D., Rozowsky, J., Zheng, H., Cheng, C.&Gerstein, M. OrthoClust: an orthology-based network framework for clustering data across multiple species. Genome Biol. 15, R100 (2014).
-
(2014)
Genome Biol.
, vol.15
-
-
Yan, K.K.1
Wang, D.2
Rozowsky, J.3
Zheng, H.4
Cheng, C.5
Gerstein, M.6
-
21
-
-
84904251656
-
Comparison of D. Melanogaster and C. Elegans developmental stages, tissues, and cells by modENCODE RNA-seq data
-
Li, J. J., Huang, H., Bickel, P. J.&Brenner, S. E. Comparison of D.melanogaster and C. Elegans developmental stages, tissues, and cells by modENCODE RNA-seq data. Genome Res. 24, 1086-1101 (2014).
-
(2014)
Genome Res.
, vol.24
, pp. 1086-1101
-
-
Li, J.J.1
Huang, H.2
Bickel, P.J.3
Brenner, S.E.4
-
22
-
-
79953043801
-
The developmental transcriptome of Drosophila melanogaster
-
Graveley, B. R. et al. The developmental transcriptome of Drosophila melanogaster. Nature 471, 473-479 (2011).
-
(2011)
Nature
, vol.471
, pp. 473-479
-
-
Graveley, B.R.1
|