메뉴 건너뛰기




Volumn 43, Issue D1, 2015, Pages D250-D256

OrthoDB v8: Update of the hierarchical catalog of orthologs and the underlying free software

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ALGORITHM; ARTHROPOD; ARTICLE; BACTERIUM; COMPUTER INTERFACE; COMPUTER PROGRAM; COPY NUMBER VARIATION; DATA ANALYSIS SOFTWARE; EUKARYOTE; FUNCTIONAL ANNOTATION; FUNGUS; GENE STRUCTURE; GENETIC DATABASE; GENOME; HUMAN; INFORMATION SYSTEM; NONHUMAN; ORTHODB; ORTHOLOGY; PRIORITY JOURNAL; PROKARYOTE; QUALITY CONTROL; SEARCH ENGINE; VERTEBRA; ANIMAL; GENETICS; INFORMATION PROCESSING; MICROBIAL GENOME; MOLECULAR EVOLUTION; SEQUENCE HOMOLOGY;

EID: 84941109990     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku1220     Document Type: Article
Times cited : (232)

References (42)
  • 1
    • 0014800108 scopus 로고
    • Distinguishing homologous from analogous proteins
    • Fitch, W. M. (1970) Distinguishing homologous from analogous proteins. Syst. Zool., 19, 99-113.
    • (1970) Syst. Zool. , vol.19 , pp. 99-113
    • Fitch, W.M.1
  • 2
    • 27644472372 scopus 로고    scopus 로고
    • Orthologs, paralogs, and evolutionary genomics
    • Koonin, E. V. (2005) Orthologs, paralogs, and evolutionary genomics. Annu. Rev. Genet., 39, 309-338.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 309-338
    • Koonin, E.V.1
  • 3
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer, E. L. and Koonin, E. V. (2002) Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet., 18, 619-620.
    • (2002) Trends Genet. , vol.18 , pp. 619-620
    • Sonnhammer, E.L.1    Koonin, E.V.2
  • 4
    • 84876665869 scopus 로고    scopus 로고
    • Functional and evolutionary implications of gene orthology
    • Gabaldon, T. and Koonin, E. V. (2013) Functional and evolutionary implications of gene orthology. Nat. Rev. Genet., 14, 360-366.
    • (2013) Nat. Rev. Genet. , vol.14 , pp. 360-366
    • Gabaldon, T.1    Koonin, E.V.2
  • 6
    • 84906871598 scopus 로고    scopus 로고
    • Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: A pilot study
    • Petty, T. J., Cordey, S., Padioleau, I., Docquier, M., Turin, L., Preynat-Seauve, O., Zdobnov, E. M. and Kaiser, L. (2014) Comprehensive human virus screening using high-throughput sequencing with a user-friendly representation of bioinformatics analysis: a pilot study. J. Clin. Microbiol., 52, 3351-3361.
    • (2014) J. Clin. Microbiol. , vol.52 , pp. 3351-3361
    • Petty, T.J.1    Cordey, S.2    Padioleau, I.3    Docquier, M.4    Turin, L.5    Preynat-Seauve, O.6    Zdobnov, E.M.7    Kaiser, L.8
  • 7
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R. L., Koonin, E. V. and Lipman, D. J. (1997) A genomic perspective on protein families. Science, 278, 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 11
    • 84904215863 scopus 로고    scopus 로고
    • Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: How much do we miss?
    • Ward, N. and Moreno-Hagelsieb, G. (2014) Quickly finding orthologs as reciprocal best hits with BLAT, LAST, and UBLAST: how much do we miss? PLoS One, 9, e101850.
    • (2014) PLoS One , vol.9 , pp. e101850
    • Ward, N.1    Moreno-Hagelsieb, G.2
  • 13
    • 84891804649 scopus 로고    scopus 로고
    • Database resources of the National Center for Biotechnology Information
    • NCBI Resource Coordinators (2014) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 42, D7-D17.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D7-D17
    • NCBI Resource Coordinators1
  • 24
    • 84882791773 scopus 로고    scopus 로고
    • The i5K Initiative: Advancing arthropod genomics for knowledge, human health, agriculture, and the environment
    • i5K Consortium (2013) The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment. J. Hered., 104, 595-600.
    • (2013) J. Hered. , vol.104 , pp. 595-600
    • I5K Consortium1
  • 26
    • 84891783174 scopus 로고    scopus 로고
    • Activities at the Universal Protein Resource (UniProt)
    • UniProt Consortium. (2014) Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res., 42, D191-D198.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D191-D198
    • UniProt Consortium1
  • 27
    • 79957630864 scopus 로고    scopus 로고
    • Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
    • Rognes, T. (2011) Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation. BMC Bioinformatics, 12, 221.
    • (2011) BMC Bioinformatics , vol.12 , pp. 221
    • Rognes, T.1
  • 28
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li, W. and Godzik, A. (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics, 22, 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 29
    • 59149097358 scopus 로고    scopus 로고
    • Algorithm of OMA for large-scale orthology inference
    • Roth, A. C., Gonnet, G. H. and Dessimoz, C. (2008) Algorithm of OMA for large-scale orthology inference. BMC Bioinformatics, 9, 518.
    • (2008) BMC Bioinformatics , vol.9 , pp. 518
    • Roth, A.C.1    Gonnet, G.H.2    Dessimoz, C.3
  • 30
    • 77954198131 scopus 로고    scopus 로고
    • A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches
    • Kristensen, D. M., Kannan, L., Coleman, M. K., Wolf, Y. I., Sorokin, A., Koonin, E. V. and Mushegian, A. (2010) A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches. Bioinformatics, 26, 1481-1487.
    • (2010) Bioinformatics , vol.26 , pp. 1481-1487
    • Kristensen, D.M.1    Kannan, L.2    Coleman, M.K.3    Wolf, Y.I.4    Sorokin, A.5    Koonin, E.V.6    Mushegian, A.7
  • 32
    • 80052823795 scopus 로고    scopus 로고
    • Orthology prediction methods: A quality assessment using curated protein families
    • Trachana, K., Larsson, T. A., Powell, S., Chen, W. H., Doerks, T., Muller, J. and Bork, P. (2011) Orthology prediction methods: a quality assessment using curated protein families. Bioessays, 33, 769-780.
    • (2011) Bioessays , vol.33 , pp. 769-780
    • Trachana, K.1    Larsson, T.A.2    Powell, S.3    Chen, W.H.4    Doerks, T.5    Muller, J.6    Bork, P.7
  • 37
    • 84891788593 scopus 로고    scopus 로고
    • The Mouse Genome Database: Integration of and access to knowledge about the laboratory mouse
    • Blake, J. A., Bult, C. J., Eppig, J. T., Kadin, J. A., Richardson, J. E. and Group, M. G. D. (2014) The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse. Nucleic Acids Res., 42, D810-D817.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D810-D817
    • Blake, J.A.1    Bult, C.J.2    Eppig, J.T.3    Kadin, J.A.4    Richardson, J.E.5
  • 40
    • 84891786814 scopus 로고    scopus 로고
    • DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements
    • Luo, H., Lin, Y., Gao, F., Zhang, C. T. and Zhang, R. (2014) DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements. Nucleic Acids Res., 42, D574-D580.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D574-D580
    • Luo, H.1    Lin, Y.2    Gao, F.3    Zhang, C.T.4    Zhang, R.5
  • 42
    • 79953324603 scopus 로고    scopus 로고
    • Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi
    • Waterhouse, R. M., Zdobnov, E. M. and Kriventseva, E. V. (2011) Correlating traits of gene retention, sequence divergence, duplicability and essentiality in vertebrates, arthropods, and fungi. Genome Biol. Evol., 3, 75-86.
    • (2011) Genome Biol. Evol. , vol.3 , pp. 75-86
    • Waterhouse, R.M.1    Zdobnov, E.M.2    Kriventseva, E.V.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.