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Volumn 43, Issue 2, 2015, Pages e8-

Revealing the amino acid composition of proteins within an expanded genetic code

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; ESCHERICHIA COLI PROTEIN; PHOSPHOSERINE; PRFA PROTEIN, E COLI; PROTEIN; STOP CODON; TRANSLATION TERMINATION FACTOR;

EID: 84941092161     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku1087     Document Type: Article
Times cited : (64)

References (29)
  • 1
    • 0014378880 scopus 로고
    • The origin of the genetic code
    • Crick, F.H.C. (1968) The origin of the genetic code. J. Mol. Biol., 38, 367-379.
    • (1968) J. Mol. Biol , vol.38 , pp. 367-379
    • Crick, F.H.C.1
  • 3
    • 0013814892 scopus 로고
    • Studies on polynucleotides XLIX. Stimulation of the binding of aminoacyl-sRNA's to ribosomes by ribotrinucleotides and a survey of codon assignments for 20 amino acids
    • Soll, D., Ohtsuka, E., Jones, D.S., Lohrmann, R., Hayatsu, H., Nishimura, S., Khorana, H.G. (1965) Studies on polynucleotides, XLIX. Stimulation of the binding of aminoacyl-sRNA's to ribosomes by ribotrinucleotides and a survey of codon assignments for 20 amino acids. Proc. Natl. Acad. Sci. U.S.A., 54, 1378-1385.
    • (1965) Proc. Natl. Acad. Sci. U.S.A , vol.54 , pp. 1378-1385
    • Soll, D.1    Ohtsuka, E.2    Jones, D.S.3    Lohrmann, R.4    Hayatsu, H.5    Nishimura, S.6    Khorana, H.G.7
  • 4
    • 77953643054 scopus 로고    scopus 로고
    • Adding new chemistries to the genetic code
    • Liu, C.C., Schultz, P.G. (2010) Adding new chemistries to the genetic code. Annu. Rev. Biochem., 79, 413-444.
    • (2010) Annu. Rev. Biochem , vol.79 , pp. 413-444
    • Liu, C.C.1    Schultz, P.G.2
  • 5
    • 84884525873 scopus 로고    scopus 로고
    • Upgrading protein synthesis for synthetic biology
    • O'Donoghue, P., Ling, J., Wang, Y.S., Soll, D. (2013) Upgrading protein synthesis for synthetic biology. Nat. Chem. Biol., 9, 594-598.
    • (2013) Nat. Chem. Biol , vol.9 , pp. 594-598
    • O'Donoghue, P.1    Ling, J.2    Wang, Y.S.3    Soll, D.4
  • 12
    • 84868088312 scopus 로고    scopus 로고
    • Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion
    • O'Donoghue, P., Prat, L., Heinemann, I.U., Ling, J., Odoi, K., Liu, W.R., S oll, D. (2012) Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion. FEBS Lett., 586, 3931-3937.
    • (2012) FEBS Lett , vol.586 , pp. 3931-3937
    • O'Donoghue, P.1
  • 13
    • 84867583216 scopus 로고    scopus 로고
    • Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion
    • Heinemann, I.U., Rovner, A.J., Aerni, H.R., Rogulina, S., Cheng, L., Olds, W., Fischer, J.T., Soll, D., Isaacs, F.J., Rinehart, J. (2012) Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion. FEBS Lett., 586, 3716-3722.
    • (2012) FEBS Lett , vol.586 , pp. 3716-3722
    • Heinemann, I.U.1    Rovner, A.J.2    Aerni, H.R.3    Rogulina, S.4    Cheng, L.5    Olds, W.6    Fischer, J.T.7    Soll, D.8    Isaacs, F.J.9    Rinehart, J.10
  • 14
    • 84874776927 scopus 로고    scopus 로고
    • Nonsense and sense suppression abilities of original and derivative Methanosarcina mazei pyrrolysyl-tRNA synthetase-tRNA(Pyl) pairs in the Escherichia coli BL21(DE3) cell strain
    • Odoi, K.A., Huang, Y., Rezenom, Y.H., Liu, W.R. (2013) Nonsense and sense suppression abilities of original and derivative Methanosarcina mazei pyrrolysyl-tRNA synthetase-tRNA(Pyl) pairs in the Escherichia coli BL21(DE3) cell strain. PloS One, 8, e57035.
    • (2013) PloS One , vol.8 , pp. e57035
    • Odoi, K.A.1    Huang, Y.2    Rezenom, Y.H.3    Liu, W.R.4
  • 16
    • 34548178909 scopus 로고    scopus 로고
    • In-gel digestion for mass spectrometric characterization of proteins and proteomes
    • Shevchenko, A., Tomas, H., Havlis, J., Olsen, J.V., Mann, M. (2007) In-gel digestion for mass spectrometric characterization of proteins and proteomes. Nat. Protoc., 1, 2856-2860.
    • (2007) Nat. Protoc , vol.1 , pp. 2856-2860
    • Shevchenko, A.1    Tomas, H.2    Havlis, J.3    Olsen, J.V.4    Mann, M.5
  • 19
    • 78650355102 scopus 로고    scopus 로고
    • Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry
    • Maclean, B., Tomazela, D.M., Abbatiello, S.E., Zhang, S., Whiteaker, J.R., Paulovich, A.G., Carr, S.A., Maccoss, M.J. (2010) Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry. Anal. Chem., 82, 10116-10124.
    • (2010) Anal. Chem , vol.82 , pp. 10116-10124
    • MacLean, B.1    Tomazela, D.M.2    Abbatiello, S.E.3    Zhang, S.4    Whiteaker, J.R.5    Paulovich, A.G.6    Carr, S.A.7    MacCoss, M.J.8
  • 20
    • 84861409697 scopus 로고    scopus 로고
    • Efficient decoding of the UAG triplet as a full-fledged sense codon enhances the growth of a prfA-deficient strain of Escherichia coli
    • Ohtake, K., Sato, A., Mukai, T., Hino, N., Yokoyama, S., Sakamoto, K. (2012) Efficient decoding of the UAG triplet as a full-fledged sense codon enhances the growth of a prfA-deficient strain of Escherichia coli. J. Bacteriol., 194, 2606-2613.
    • (2012) J. Bacteriol , vol.194 , pp. 2606-2613
    • Ohtake, K.1    Sato, A.2    Mukai, T.3    Hino, N.4    Yokoyama, S.5    Sakamoto, K.6
  • 22
    • 79551662220 scopus 로고    scopus 로고
    • Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides
    • Kettenbach, A.N., Rush, J., Gerber, S.A. (2011) Absolute quantification of protein and post-translational modification abundance with stable isotope-labeled synthetic peptides. Nat. Protoc., 6, 175-186.
    • (2011) Nat. Protoc , vol.6 , pp. 175-186
    • Kettenbach, A.N.1    Rush, J.2    Gerber, S.A.3
  • 23
    • 84868336980 scopus 로고    scopus 로고
    • Expert system for computer-assisted annotation of MS/MS spectra
    • Neuhauser, N., Michalski, A., Cox, J., Mann, M. (2012) Expert system for computer-assisted annotation of MS/MS spectra. Mol. Cell. Proteomics, 11, 1500-1509.
    • (2012) Mol. Cell. Proteomics , vol.11 , pp. 1500-1509
    • Neuhauser, N.1    Michalski, A.2    Cox, J.3    Mann, M.4
  • 24
    • 33847401893 scopus 로고    scopus 로고
    • MyriMatch: Highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis
    • Tabb, D.L., Fernando, C.G., Chambers, M.C. (2007) MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. J. Proteome Res., 6, 654-661.
    • (2007) J. Proteome Res , vol.6 , pp. 654-661
    • Tabb, D.L.1    Fernando, C.G.2    Chambers, M.C.3
  • 26
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M.P., Wolters, D., Yates, J.R. III. (2001) Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol., 19, 242-247.
    • (2001) Nat. Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 28
    • 0013824051 scopus 로고
    • On the evolution of the genetic code
    • Woese, C.R. (1965) On the evolution of the genetic code. Proc. Natl. Acad. Sci. U.S.A., 54, 1546-1552.
    • (1965) Proc. Natl. Acad. Sci. U.S.A , vol.54 , pp. 1546-1552
    • Woese, C.R.1
  • 29
    • 84889593808 scopus 로고    scopus 로고
    • Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster
    • Dunn, J.G., Foo, C.K., Belletier, N.G., Gavis, E.R., Weissman, J.S. (2013) Ribosome profiling reveals pervasive and regulated stop codon readthrough in Drosophila melanogaster. Elife, 2, e01179.
    • (2013) Elife , vol.2 , pp. e01179
    • Dunn, J.G.1    Foo, C.K.2    Belletier, N.G.3    Gavis, E.R.4    Weissman, J.S.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.