Enhanced phosphoserine insertion during Escherichia coli protein synthesis via partial UAG codon reassignment and release factor 1 deletion

FEBS Letters

Volumn 586, Issue 20, 2012, Pages 3716-3722

  Heinemann, Ilka U ^a   Rovner, Alexis J ^a   Aerni, Hans R ^b   Rogulina, Svetlana ^b   Cheng, Laura ^a   Olds, William ^a   Fischer, Jonathan T ^a   Söll, Dieter ^a   Isaacs, Farren J ^a   Rinehart, Jesse ^a,b  

^a YALE UNIVERSITY   (United States)

^b YALE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Genetic code; Genetic code expansion; Genome engineering; Phosphoproteomics; Phosphoserine; Synthetic biology

Indexed keywords

ESCHERICHIA COLI PROTEIN; GREEN FLUORESCENT PROTEIN; PHOSPHOSERINE; PROTEIN KINASE WNK4; PROTEOME; TRANSFER RNA;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CARBOXY TERMINAL SEQUENCE; CELL VIABILITY; GENE; GENE DELETION; GENE LOCUS; GENE OVEREXPRESSION; GENETIC CODE; GENETIC ENGINEERING; GENOME ANALYSIS; NONHUMAN; NONSENSE MUTATION; OPEN READING FRAME; PHENOTYPE; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PHOSPHORYLATION; RELEASE FACTOR 1 GENE; SITE DIRECTED MUTAGENESIS; STOP CODON;

AMINO ACID SEQUENCE; BASE SEQUENCE; CODON, TERMINATOR; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE DELETION; GENOME, BACTERIAL; MOLECULAR SEQUENCE DATA; PEPTIDE TERMINATION FACTORS; PHENOTYPE; PHOSPHOSERINE; PROTEIN BIOSYNTHESIS; PROTEOME;

ARCHAEA; ESCHERICHIA COLI;

EID: 84867583216     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2012.08.031     Document Type: Article

References (26)

1. M.K. Tarrant, and P.A. Cole The chemical biology of protein phosphorylation Annu. Rev. Biochem. 78 2009 797 825
2. H.S. Park Expanding the genetic code of Escherichia coli with phosphoserine Science 333 2011 1151 1154
3. G. Eggertsson, and D. Söll Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli Microbiol. Rev. 52 1988 354 374
4. L. Wang, A. Brock, B. Herberich, and P.G. Schultz Expanding the genetic code of Escherichia coli Science 292 2001 498 500
5. S.M. Ryden, and L.A. Isaksson A temperature-sensitive mutant of Escherichia coli that shows enhanced misreading of UAG/A and increased efficiency for some tRNA nonsense suppressors Mol. Gen. Genet. 193 1984 38 45
6. S.Y. Gerdes Experimental determination and system level analysis of essential genes in Escherichia coli MG1655 J. Bacteriol. 185 2003 5673 5684
7. D.B. Johnson RF1 knockout allows ribosomal incorporation of unnatural amino acids at multiple sites Nat. Chem. Biol. 7 2011 779 786
8. D.B. Johnson, C. Wang, J. Xu, M.D. Schultz, R.J. Schmitz, J.R. Ecker, and L. Wang Release factor one is nonessential in Escherichia coli ACS Chem. Biol. 7 2012 1337 1344
9. T. Mukai, A. Hayashi, F. Iraha, A. Sato, K. Ohtake, S. Yokoyama, and K. Sakamoto Codon reassignment in the Escherichia coli genetic code Nucleic Acids Res. 38 2010 8188 8195
10. T. Mukai Genetic-code evolution for protein synthesis with non-natural amino acids Biochem. Biophys. Res. Commun. 411 2011 757 761
11. K. Ohtake, A. Sato, T. Mukai, N. Hino, S. Yokoyama, and K. Sakamoto Efficient decoding of the UAG triplet as a full-fledged sense codon enhances the growth of a prfA-deficient strain of Escherichia coli J. Bacteriol. 194 2012 2606 2613
12. H.H. Wang, F.J. Isaacs, P.A. Carr, Z.Z. Sun, G. Xu, C.R. Forest, and G.M. Church Programming cells by multiplex genome engineering and accelerated evolution Nature 460 2009 894 898
13. J.A. DeVito Recombineering with tolC as a selectable/counter-selectable marker: remodeling the rRNA operons of Escherichia coli Nucleic Acids Res. 36 2008 e4
14. F.J. Isaacs, D.J. Dwyer, C. Ding, D.D. Pervouchine, C.R. Cantor, and J.J. Collins Engineered riboregulators enable post-transcriptional control of gene expression Nat. Biotechnol. 22 2004 841 847
15. R. Lutz, and H. Bujard Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements Nucleic Acids Res. 25 1997 1203 1210
16. F.J. Isaacs Precise manipulation of chromosomes in vivo enables genome-wide codon replacement Science 333 2011 348 353
17. T. Baba Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection Mol. Syst. Biol. 2 2006 2006.0008
18. M. Jahn, M.J. Rogers, and D. Söll Anticodon and acceptor stem nucleotides in tRNA(Gln) are major recognition elements for E. coli glutaminyl-tRNA synthetase Nature 352 1991 258 260
19. P. Schattner, A.N. Brooks, and T.M. Lowe The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs Nucleic Acids Res. 33 2005 W686 W689
20. K. Hayashi Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 Mol. Syst. Biol. 2 2006 2006.0007
21. Y. Huang, W.K. Russell, W. Wan, P.J. Pai, D.H. Russell, and W. Liu A convenient method for genetic incorporation of multiple noncanonical amino acids into one protein in Escherichia coli Mol. Biosyst. 6 2010 683 686
22. H. Neumann Rewiring translation - genetic code expansion and its applications FEBS Lett. 586 2012 2057 2064
23. C.L. Yang, X. Zhu, Z. Wang, A.R. Subramanya, and D.H. Ellison Mechanisms of WNK1 and WNK4 interaction in the regulation of thiazide-sensitive NaCl cotransport J. Clin. Invest. 115 2005 1379 1387
24. D.J. Rozansky Aldosterone mediates activation of the thiazide-sensitive Na-Cl cotransporter through an SGK1 and WNK4 signaling pathway J. Clin. Invest. 119 2009 2601 2612
25. A.M. Ring, Q. Leng, J. Rinehart, F.H. Wilson, K.T. Kahle, S.C. Hebert, and R.P. Lifton An SGK1 site in WNK4 regulates Na+ channel and K+ channel activity and has implications for aldosterone signaling and K+ homeostasis Proc. Natl. Acad. Sci. USA 104 2007 4025 4029
26. D.H. Lin, P. Yue, J. Rinehart, P. Sun, Z. Wang, R. Lifton, and W.H. Wang Protein phosphatase 1 modulates the inhibitory effect of With-no-Lysine kinase 4 on ROMK channels Am. J. Physiol. Renal Physiol. 303 2012 F110 F119