-
1
-
-
84907208215
-
-
6th edn, (eds Knipe, D. M. et al.) Ch. 20, (Lippincott Williams & Wilkins
-
Green, K. Y. in Fields Virology 6th edn, Vol. 1 (eds Knipe, D. M. et al.) Ch. 20, 582-608 (Lippincott Williams & Wilkins, 2013).
-
(2013)
Fields Virology
, vol.1
, pp. 582-608
-
-
Green, K.Y.1
-
2
-
-
84880732272
-
Norovirus disease in the United States
-
Hall, A. J. et al. Norovirus disease in the United States. Emerg. Infect. Dis. 19, 1198-1205 (2013).
-
(2013)
Emerg. Infect. Dis.
, vol.19
, pp. 1198-1205
-
-
Hall, A.J.1
-
3
-
-
37249078674
-
Norovirus infections in symptomatic and asymptomatic food handlers in Japan
-
Ozawa, K., Oka, T., Takeda, N. & Hansman, G. S. Norovirus infections in symptomatic and asymptomatic food handlers in Japan. J. Clin. Microbiol. 45, 3996-4005 (2007).
-
(2007)
J. Clin. Microbiol.
, vol.45
, pp. 3996-4005
-
-
Ozawa, K.1
Oka, T.2
Takeda, N.3
Hansman, G.S.4
-
4
-
-
70349315360
-
Norovirus illness is a global problem: Emergence and spread of norovirus GII. 4 variants, 2001-2007
-
Siebenga, J. J. et al. Norovirus illness is a global problem: emergence and spread of norovirus GII. 4 variants, 2001-2007. J. Infect. Dis. 200, 802-812 (2009).
-
(2009)
J. Infect. Dis.
, vol.200
, pp. 802-812
-
-
Siebenga, J.J.1
-
5
-
-
77951845107
-
Seasonal pattern and genotype distribution of norovirus infection in Japan
-
Dey, S. K. et al. Seasonal pattern and genotype distribution of norovirus infection in Japan. Pediatr. Infect. Dis. J. 29, e32-e34 (2010).
-
(2010)
Pediatr. Infect. Dis. J.
, vol.29
, pp. e32-e34
-
-
Dey, S.K.1
-
6
-
-
67949123076
-
Detection of enteric viruses in rectal swabs from children with acute gastroenteritis attending the pediatric outpatient clinics in Sapporo, Japan
-
Nakanishi, K. et al. Detection of enteric viruses in rectal swabs from children with acute gastroenteritis attending the pediatric outpatient clinics in Sapporo, Japan. J. Clin. Virol. 46, 94-97 (2009).
-
(2009)
J. Clin. Virol.
, vol.46
, pp. 94-97
-
-
Nakanishi, K.1
-
7
-
-
85028723318
-
Outbreak Investigation Team. Large multistate outbreak of norovirus gastroenteritis associated with frozen strawberries, Germany, 2012
-
Bernard, H. et al. Outbreak Investigation Team. Large multistate outbreak of norovirus gastroenteritis associated with frozen strawberries, Germany, 2012. Euro. Surveill. 19, 20719 (2014).
-
(2014)
Euro. Surveill.
, vol.19
, pp. 20719
-
-
Bernard, H.1
-
8
-
-
84875355651
-
An outbreak of norovirus gastroenteritis associated with a secondary water supply system in a factory in south China
-
Li, Y. et al. An outbreak of norovirus gastroenteritis associated with a secondary water supply system in a factory in south China. BMC Public Health 13, 283 (2013).
-
(2013)
BMC Public Health
, vol.13
, pp. 283
-
-
Li, Y.1
-
9
-
-
77949419616
-
A foodborne norovirus outbreak at a manufacturing company
-
Zomer, T. P. et al. A foodborne norovirus outbreak at a manufacturing company. Epidemiol. Infect. 138, 501-506 (2010).
-
(2010)
Epidemiol. Infect.
, vol.138
, pp. 501-506
-
-
Zomer, T.P.1
-
10
-
-
0025607294
-
Norwalk virus genome cloning and characterization
-
Xi, J. N., Graham, D. Y., Wang, K. N. & Estes, M. K. Norwalk virus genome cloning and characterization. Science 250, 1580-1583 (1990).
-
(1990)
Science
, vol.250
, pp. 1580-1583
-
-
Xi, J.N.1
Graham, D.Y.2
Wang, K.N.3
Estes, M.K.4
-
11
-
-
84884815041
-
Proposal for a unified norovirus nomenclature and genotyping
-
Kroneman, A. et al. Proposal for a unified norovirus nomenclature and genotyping. Arch. Virol. 158, 2059-2068 (2013).
-
(2013)
Arch. Virol.
, vol.158
, pp. 2059-2068
-
-
Kroneman, A.1
-
12
-
-
84978132608
-
-
6th edn, (eds Knipe, D. M. et al.) Ch. 3, (Lippincott Williams & Wilkins
-
Harrison, S. C. in Fields Virology 6th edn, Vol. 1 (eds Knipe, D. M. et al.) Ch. 3, 52-86 (Lippincott Williams & Wilkins, 2013).
-
(2013)
Fields Virology
, vol.1
, pp. 52-86
-
-
Harrison, S.C.1
-
13
-
-
10644290783
-
Evolutionary trace residues in noroviruses: Importance in receptor binding, antigenicity, virion assembly, and strain diversity
-
Chakravarty, S., Hutson, A. M., Estes, M. K. & Prasad B. V. Evolutionary trace residues in noroviruses: importance in receptor binding, antigenicity, virion assembly, and strain diversity. J. Virol. 79, 554-568 (2005).
-
(2005)
J. Virol.
, vol.79
, pp. 554-568
-
-
Chakravarty, S.1
Hutson, A.M.2
Estes, M.K.3
Prasad, B.V.4
-
14
-
-
0345167058
-
Evolution of human calicivirus RNA in vivo: Accumulation of mutations in the protruding P2 domain of the capsid leads to structural changes and possibly a new phenotype
-
Nilsson, M. et al. Evolution of human calicivirus RNA in vivo: accumulation of mutations in the protruding P2 domain of the capsid leads to structural changes and possibly a new phenotype. J. Virol. 77, 13117-13124 (2003).
-
(2003)
J. Virol.
, vol.77
, pp. 13117-13124
-
-
Nilsson, M.1
-
15
-
-
0033536662
-
X-ray crystallographic structure of the Norwalk virus capsid
-
Prasad, B. V. et al. X-ray crystallographic structure of the Norwalk virus capsid. Science. 286, 287-290 (1999).
-
(1999)
Science.
, vol.286
, pp. 287-290
-
-
Prasad, B.V.1
-
16
-
-
2642552973
-
The P domain of norovirus capsid protein forms dimer and binds to histo-blood group antigen receptors
-
Tan, M., Hegde, R. S. & Jiang, X. The P domain of norovirus capsid protein forms dimer and binds to histo-blood group antigen receptors. J. Virol. 78, 6233-6242 (2004).
-
(2004)
J. Virol.
, vol.78
, pp. 6233-6242
-
-
Tan, M.1
Hegde, R.S.2
Jiang, X.3
-
17
-
-
77954057885
-
Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants
-
Siebenga, J. J. et al. Phylodynamic reconstruction reveals norovirus GII.4 epidemic expansions and their molecular determinants. PLoS Pathog. 6, e1000884 (2010).
-
(2010)
PLoS Pathog.
, vol.6
-
-
Siebenga, J.J.1
-
18
-
-
84878165314
-
Recombination within the pandemic norovirus GII. 4 lineage
-
Eden, J. S., Tanaka, M. M., Boni, M. F., Rawlinson, W. D. & White, P. A. Recombination within the pandemic norovirus GII. 4 lineage. J. Virol. 87, 6270-6282 (2013).
-
(2013)
J. Virol.
, vol.87
, pp. 6270-6282
-
-
Eden, J.S.1
Tanaka, M.M.2
Boni, M.F.3
Rawlinson, W.D.4
White, P.A.5
-
19
-
-
84891541960
-
Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013
-
Vega, E. et al. Genotypic and epidemiologic trends of norovirus outbreaks in the United States, 2009 to 2013. J. Clin. Microbiol. 52, 147-155 (2014).
-
(2014)
J. Clin. Microbiol.
, vol.52
, pp. 147-155
-
-
Vega, E.1
-
20
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond, A. J. & Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7, 214 (2007).
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
21
-
-
80053513645
-
Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification
-
Wang, H. W., Lin, Y. C., Pai, T. W. & Chang, H. T. Prediction of B-cell linear epitopes with a combination of support vector machine classification and amino acid propensity identification. J. Biomed. Biotechnol. 2011, 432830 (2011).
-
(2011)
J. Biomed. Biotechnol.
, vol.2011
, pp. 432830
-
-
Wang, H.W.1
Lin, Y.C.2
Pai, T.W.3
Chang, H.T.4
-
22
-
-
47649130438
-
Predicting linear B-cell epitopes using string kernels
-
EL-Manzalawy, Y., Dobbs, D. & Honavar, V. Predicting linear B-cell epitopes using string kernels. J. Mol. Recognit. 21, 243-255 (2008).
-
(2008)
J. Mol. Recognit.
, vol.21
, pp. 243-255
-
-
EL-Manzalawy, Y.1
Dobbs, D.2
Honavar, V.3
-
23
-
-
33751104704
-
Improved method for predicting linear B-cell epitopes
-
Larsen, J. E., Lund, O. & Nielsen, M. Improved method for predicting linear B-cell epitopes. Immunome Res. 2, 2 (2006).
-
(2006)
Immunome Res.
, vol.2
, pp. 2
-
-
Larsen, J.E.1
Lund, O.2
Nielsen, M.3
-
24
-
-
0034201441
-
EMBOSS: The European molecular biology open software suite
-
Rice, P., Longden, I. & Bleasby, A. EMBOSS: the European molecular biology open software suite. Trends Genet. 16, 276-277 (2000).
-
(2000)
Trends Genet.
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
25
-
-
84877146650
-
Improved method for linear B-cell epitope prediction using antigen's primary sequence
-
Singh, H., Ansari, H. R. & Raghava, G. P. Improved method for linear B-cell epitope prediction using antigen's primary sequence. PLoS One 8, e62216 (2013).
-
(2013)
PLoS One
, vol.8
-
-
Singh, H.1
Ansari, H.R.2
Raghava, G.P.3
-
26
-
-
84901791050
-
Rapid replacement of human respiratory syncytial virus A with the ON1 genotype having 72 nucleotide duplication in G gene
-
Kim, Y. J. et al. Rapid replacement of human respiratory syncytial virus A with the ON1 genotype having 72 nucleotide duplication in G gene. Infect. Genet. Evol. 26, 103-112 (2014).
-
(2014)
Infect. Genet. Evol.
, vol.26
, pp. 103-112
-
-
Kim, Y.J.1
-
27
-
-
48249142845
-
Atomic resolution structural characterization of recognition of histoblood group antigens by Norwalk virus
-
Choi, J. M., Hutson, A. M., Estes, M. K. & Prasad, B. V. Atomic resolution structural characterization of recognition of histoblood group antigens by Norwalk virus. Proc. Natl. Acad. Sci. USA 105, 9175-9180 (2008).
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 9175-9180
-
-
Choi, J.M.1
Hutson, A.M.2
Estes, M.K.3
Prasad, B.V.4
-
28
-
-
84875469105
-
Epidemiology and Evolution of Rotaviruses and Noroviruses from an Archival WHO Global Study in Children (1976-79) with Implications for Vaccine Design
-
Rackoff, L. A., Bok, K., Green, K. Y. & Kapikian, A. Z. Epidemiology and Evolution of Rotaviruses and Noroviruses from an Archival WHO Global Study in Children (1976-79) with Implications for Vaccine Design. PLoS One. 8, e59394 (2013).
-
(2013)
PLoS One.
, vol.8
-
-
Rackoff, L.A.1
Bok, K.2
Green, K.Y.3
Kapikian, A.Z.4
-
29
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen, R. Molecular signatures of natural selection. Annu. Rev. Genet. 39, 197-218 (2005).
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
30
-
-
77956615805
-
Enterovirus 71 vaccine: Close but still far
-
Zhang, D., Lu, J. & Lu J. Enterovirus 71 vaccine: close but still far. Int. J. Infec.t Dis. 14, e739-743 (2010).
-
(2010)
Int. J. Infec.t Dis.
, vol.14
, pp. e739-743
-
-
Zhang, D.1
Lu, J.2
Lu, J.3
-
31
-
-
84906969109
-
Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting
-
Cotton, M. et al. Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting. J. Virol. 88, 11056-11069 (2014).
-
(2014)
J. Virol.
, vol.88
, pp. 11056-11069
-
-
Cotton, M.1
-
32
-
-
84877698093
-
Molecular adaptation within the coat protein-encoding gene of Tunisian almond isolates of Prunus necrotic ringspot virus
-
Boulila, M., Ben Tiba, S. & Jilani, S. Molecular adaptation within the coat protein-encoding gene of Tunisian almond isolates of Prunus necrotic ringspot virus. J. Genet. 92, 11-24 (2013).
-
(2013)
J. Genet.
, vol.92
, pp. 11-24
-
-
Boulila, M.1
Ben Tiba, S.2
Jilani, S.3
-
33
-
-
59249085256
-
Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus
-
Botosso, V. F. et al. Positive selection results in frequent reversible amino acid replacements in the G protein gene of human respiratory syncytial virus. PLoS Pathog. 5, e1000254 (2009).
-
(2009)
PLoS Pathog.
, vol.5
-
-
Botosso, V.F.1
-
34
-
-
84864605220
-
Detecting individual sites subject to episodic diversifying selection
-
Murrell, B. et al. Detecting individual sites subject to episodic diversifying selection. PLoS Genet. 8, e1002764 (2012).
-
(2012)
PLoS Genet.
, vol.8
-
-
Murrell, B.1
-
35
-
-
17744396121
-
Not so different after all: A comparison of methods for detecting amino acid sites under selection
-
Pond, S. L. & Frost, S. D. Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol. Biol. Evol. 22, 1208-1222 (2005).
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1208-1222
-
-
Pond, S.L.1
Frost, S.D.2
-
36
-
-
84935005103
-
-
6th edn, eds Knipe, D. M. et al.) Ch. 9, (Lippincott Williams & Wilkins
-
Braciale, T. J., Hahn Y. S. & Burton, D. R. in Fields Virology 6th edn, Vol. 1 eds Knipe, D. M. et al.) Ch. 9, 214-253 (Lippincott Williams & Wilkins, 2013).
-
(2013)
Fields Virology
, vol.1
, pp. 214-253
-
-
Braciale, T.J.1
Hahn, Y.S.2
Burton, D.R.3
-
37
-
-
39749202900
-
Structure of antibody-neutralized murine norovirus and unexpected differences from viruslike particles
-
Katpally, U., Wobus, C. E., Dryden, K., Virgin, H. W. IV & Smith, T. J. Structure of antibody-neutralized murine norovirus and unexpected differences from viruslike particles. J. Virol. 82, 2079-2088 (2008).
-
(2008)
J. Virol.
, vol.82
, pp. 2079-2088
-
-
Katpally, U.1
Wobus, C.E.2
Dryden, K.3
Virgin, I.V.H.W.4
Smith, T.J.5
-
38
-
-
36048986725
-
A single-amino-acid substitution in the P2 domain of VP1 of murine norovirus is sufficient for escape from antibody neutralization
-
Lochridge, V. P. & Hardy, M. E. A single-amino-acid substitution in the P2 domain of VP1 of murine norovirus is sufficient for escape from antibody neutralization. J. Virol. 81, 12316-12322 (2007).
-
(2007)
J. Virol.
, vol.81
, pp. 12316-12322
-
-
Lochridge, V.P.1
Hardy, M.E.2
-
39
-
-
55549147174
-
Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history
-
Motomura, K. et al. Identification of monomorphic and divergent haplotypes in the 2006-2007 norovirus GII/4 epidemic population by genomewide tracing of evolutionary history. J. Virol. 82, 11247-11262 (2008).
-
(2008)
J. Virol.
, vol.82
, pp. 11247-11262
-
-
Motomura, K.1
-
40
-
-
84879533775
-
Bioinformatics analysis of the epitope regions for norovirus capsid protein
-
Chen, L. et al. Bioinformatics analysis of the epitope regions for norovirus capsid protein. BMC Bioinformatics. 14, S5 (2013).
-
(2013)
BMC Bioinformatics.
, vol.14
, pp. S5
-
-
Chen, L.1
-
41
-
-
84924955978
-
Computational Prediction and Analysis of Envelop Glycoprotein Epitopes of DENV-2 and DENV-3 Pakistani Isolates: A First Step towards Dengue Vaccine Development
-
Amat-ur-Rasool, H., Saghir, A. & Idrees, M. Computational Prediction and Analysis of Envelop Glycoprotein Epitopes of DENV-2 and DENV-3 Pakistani Isolates: A First Step towards Dengue Vaccine Development. PLoS One. 10, e0119854 (2015).
-
(2015)
PLoS One.
, vol.10
-
-
Amat-ur-Rasool, H.1
Saghir, A.2
Idrees, M.3
-
42
-
-
84861205239
-
Human monoclonal antibodies to a novel cluster of conformational epitopes on HCV E2 with resistance to neutralization escape in a genotype 2a isolate
-
Keck, Z. Y. et al. Human monoclonal antibodies to a novel cluster of conformational epitopes on HCV E2 with resistance to neutralization escape in a genotype 2a isolate. PLoS Pathog. 8, e1002653 (2012).
-
(2012)
PLoS Pathog.
, vol.8
-
-
Keck, Z.Y.1
-
43
-
-
84866443327
-
Broad neutralization by a combination of antibodies recognizing the CD4 binding site and a new conformational epitope on the HIV-1 envelope protein
-
Klein, F. et al. Broad neutralization by a combination of antibodies recognizing the CD4 binding site and a new conformational epitope on the HIV-1 envelope protein. J. Exp. Med. 209, 1469-1479 (2012).
-
(2012)
J. Exp. Med.
, vol.209
, pp. 1469-1479
-
-
Klein, F.1
-
44
-
-
79956339598
-
An automated genotyping tool for enteroviruses and noroviruses
-
Kroneman A. et al. An automated genotyping tool for enteroviruses and noroviruses. J. Clin. Virol. 51, 121-125 (2011).
-
(2011)
J. Clin. Virol.
, vol.51
, pp. 121-125
-
-
Kroneman, A.1
-
45
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin, M. A. et al. Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947-2948 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
46
-
-
80051679807
-
Kakusan4 and Aminosan: Two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data
-
Tanabe, A. S. Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data. Mol. Ecol. Resour. 11, 914-921 (2011).
-
(2011)
Mol. Ecol. Resour.
, vol.11
, pp. 914-921
-
-
Tanabe, A.S.1
-
47
-
-
0034983646
-
Bayesian selection of continuous-time Markov chain evolutionary models
-
Suchard, M. A., Weiss, R. E. & Sinsheimer, J. S. Bayesian selection of continuous-time Markov chain evolutionary models. Mol Biol Evol. 18, 1001-1013 (2001).
-
(2001)
Mol Biol Evol.
, vol.18
, pp. 1001-1013
-
-
Suchard, M.A.1
Weiss, R.E.2
Sinsheimer, J.S.3
-
49
-
-
84940980674
-
-
Available at:. (Accessed: 11th December 2014)
-
Rambaut, A. & Drummond, A. J. Tracer. (2013) Available at: http://tree.bio.ed.ac.uk/software/tracer. (Accessed: 11th December 2014).
-
(2013)
J. Tracer
-
-
Rambaut, A.1
Drummond, A.2
-
50
-
-
84875215709
-
Investigation of the freely available easy-to-use software 'EZR' for medical statistics
-
Kanda, Y. Investigation of the freely available easy-to-use software 'EZR' for medical statistics. Bone Marrow Transplant. 48, 452-458 (2013).
-
(2013)
Bone Marrow Transplant.
, vol.48
, pp. 452-458
-
-
Kanda, Y.1
-
51
-
-
17744395033
-
Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments
-
Pond, S. L. & Frost, S. D. Datamonkey: Rapid detection of selective pressure on individual sites of codon alignments. Bioinformatics 21, 2531-2533 (2005).
-
(2005)
Bioinformatics
, vol.21
, pp. 2531-2533
-
-
Pond, S.L.1
Frost, S.D.2
-
52
-
-
84890330527
-
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0
-
Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol. Biol. Evol. 30, 2725-2729 (2013).
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 2725-2729
-
-
Tamura, K.1
Stecher, G.2
Peterson, D.3
Filipski, A.4
Kumar, S.5
|