메뉴 건너뛰기




Volumn 10, Issue 3, 2015, Pages

Computational prediction and analysis of envelop glycoprotein epitopes of DENV-2 and DENV-3 Pakistani isolates: A first step towards dengue vaccine development

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; VIRUS ENVELOPE PROTEIN; DENGUE VACCINE; NS1 PROTEIN, DENGUE VIRUS TYPE 2; NS1 PROTEIN, DENGUE VIRUS TYPE 3; VIRAL PROTEIN;

EID: 84924955978     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0119854     Document Type: Article
Times cited : (14)

References (28)
  • 1
    • 10944252079 scopus 로고    scopus 로고
    • Emerging flaviviruses: The spread and resurgence of Japanese encephalitis, West Nile and dengue viruses
    • 15577938
    • Mackenzie JS, Gubler DJ, Petersen LR. Emerging flaviviruses: the spread and resurgence of Japanese encephalitis, West Nile and dengue viruses. Nat Med. 2004;10:S98-S109. PMID: 15577938
    • (2004) Nat Med. , vol.10 , pp. S98-S109
    • Mackenzie, J.S.1    Gubler, D.J.2    Petersen, L.R.3
  • 2
    • 84883274852 scopus 로고    scopus 로고
    • Evolution and heterogeneity of multiple serotypes of Dengue virus in Pakistan, 2006-2011
    • 24007412
    • Koo C, Nasir A, Hapuarachchi HC, Lee K-S, Hasan Z, Ng L-C, et al. Evolution and heterogeneity of multiple serotypes of Dengue virus in Pakistan, 2006-2011. Virol J. 2013;10:275. doi: 10.1186/1743-422X-10-275 PMID: 24007412
    • (2013) Virol J. , vol.10 , pp. 275
    • Koo, C.1    Nasir, A.2    Hapuarachchi, H.C.3    Lee, K.-S.4    Hasan, Z.5    Ng, L.-C.6
  • 4
    • 50149096815 scopus 로고    scopus 로고
    • Characterization of dengue virus complex-specific neutralizing epitopes on envelope protein domain III of dengue 2 virus
    • 18562544
    • Gromowski GD, Barrett ND, Barrett AD. Characterization of dengue virus complex-specific neutralizing epitopes on envelope protein domain III of dengue 2 virus. J Virol. 2008;82:8828-8837. doi: 10.1128/JVI.00606-08 PMID: 18562544
    • (2008) J Virol. , vol.82 , pp. 8828-8837
    • Gromowski, G.D.1    Barrett, N.D.2    Barrett, A.D.3
  • 5
    • 0028355518 scopus 로고
    • Dengue: The risk to developed and developing countries
    • 8146129
    • Monath TP. Dengue: the risk to developed and developing countries. P Natl Acad Sci. 1994;91:2395-2400. PMID: 8146129
    • (1994) P Natl Acad Sci. , vol.91 , pp. 2395-2400
    • Monath, T.P.1
  • 6
    • 77956166930 scopus 로고    scopus 로고
    • Bioinformatics analysis and characteristics of envelop glycoprotein E epitopes of dengue virus
    • Zhong H, Zhao W, Peng L, Li S-F, Cao H. Bioinformatics analysis and characteristics of envelop glycoprotein E epitopes of dengue virus. J Biomed Sci Eng. 2009;2:123.
    • (2009) J Biomed Sci Eng. , vol.2 , pp. 123
    • Zhong, H.1    Zhao, W.2    Peng, L.3    Li, S.-F.4    Cao, H.5
  • 7
  • 8
    • 79952423680 scopus 로고    scopus 로고
    • Dengue fever (DF) in Pakistan
    • 21349169
    • Jahan F. Dengue fever (DF) in Pakistan. Asia Pac Fam Med. 2011;10:1-4. doi: 10.1186/1447-056X-10-1 PMID: 21349169
    • (2011) Asia Pac Fam Med. , vol.10 , pp. 1-4
    • Jahan, F.1
  • 9
    • 77958568882 scopus 로고    scopus 로고
    • Demographic and clinical features of dengue fever in Pakistan from 2003-2007: A retrospective cross-sectional study
    • 20856935
    • Khan E, Kisat M, Khan N, Nasir A, Ayub S, Hasan R. Demographic and clinical features of dengue fever in Pakistan from 2003-2007: a retrospective cross-sectional study. PLoS One. 2010;5:e12505. doi: 10.1371/journal.pone.0012505 PMID: 20856935
    • (2010) PLoS One , vol.5 , pp. e12505
    • Khan, E.1    Kisat, M.2    Khan, N.3    Nasir, A.4    Ayub, S.5    Hasan, R.6
  • 10
    • 0031184179 scopus 로고    scopus 로고
    • An epidemic of dengue fever in Karachi-associated clinical manifestations
    • 9301157
    • Qureshi JA, Notta NJ, Salahuddin N, Zaman V, Khan J. An epidemic of dengue fever in Karachi-associated clinical manifestations. J Pak Med Assoc. 1997;47:178-180. PMID: 9301157
    • (1997) J Pak Med Assoc. , vol.47 , pp. 178-180
    • Qureshi, J.A.1    Notta, N.J.2    Salahuddin, N.3    Zaman, V.4    Khan, J.5
  • 11
    • 50849134613 scopus 로고    scopus 로고
    • Co-circulations of two genotypes of dengue virus in 2006 out-break of dengue hemorrhagic fever in Karachi, Pakistan
    • 18639489
    • Khan E, Hasan R, Mehraj V, Nasir A, Siddiqui J, Hewson R. Co-circulations of two genotypes of dengue virus in 2006 out-break of dengue hemorrhagic fever in Karachi, Pakistan. J Clin Virol. 2008;43:176-179. doi: 10.1016/j.jcv. 2008.06.003 PMID: 18639489
    • (2008) J Clin Virol. , vol.43 , pp. 176-179
    • Khan, E.1    Hasan, R.2    Mehraj, V.3    Nasir, A.4    Siddiqui, J.5    Hewson, R.6
  • 12
    • 0020351850 scopus 로고
    • West Nile virus in Pakistan. 1. Sero-epidemiological studies in Punjab Province
    • 6926759
    • Hayes C, Baqar S, Ahmed T, Chowdhry M, Reisen W. West Nile virus in Pakistan. 1. Sero-epidemiological studies in Punjab Province. Trans R Soc Trop Med Hyg. 1982;76:431-436. PMID: 6926759
    • (1982) Trans R Soc Trop Med Hyg. , vol.76 , pp. 431-436
    • Hayes, C.1    Baqar, S.2    Ahmed, T.3    Chowdhry, M.4    Reisen, W.5
  • 13
    • 84867846632 scopus 로고    scopus 로고
    • A brief review on dengue molecular virology, diagnosis, treatment and prevalence in Pakistan
    • 23092510
    • Idrees S, Ashfaq UA. A brief review on dengue molecular virology, diagnosis, treatment and prevalence in Pakistan. Genet Vaccines Ther. 2012;10. doi: 10.1186/1479-0556-10-10 PMID: 23092510
    • (2012) Genet Vaccines Ther. , pp. 10
    • Idrees, S.1    Ashfaq, U.A.2
  • 14
    • 0025116324 scopus 로고
    • Flavivirus genome organization, expression, and replication
    • 2174669
    • Chambers TJ, Hahn CS, Galler R, Rice CM. Flavivirus genome organization, expression, and replication. Annu Rev Microbiol. 1990;44:649-688. PMID: 2174669
    • (1990) Annu Rev Microbiol. , vol.44 , pp. 649-688
    • Chambers, T.J.1    Hahn, C.S.2    Galler, R.3    Rice, C.M.4
  • 15
    • 18344387519 scopus 로고    scopus 로고
    • Structure of dengue virus: Implications for flavivirus organization, maturation, and fusion
    • 11893341
    • Kuhn RJ, Zhang W, Rossmann MG, Pletnev SV, Corver J, Lenches E, et al. Structure of dengue virus: implications for flavivirus organization, maturation, and fusion. Cell. 2002;108:717-725. PMID: 11893341
    • (2002) Cell. , vol.108 , pp. 717-725
    • Kuhn, R.J.1    Zhang, W.2    Rossmann, M.G.3    Pletnev, S.V.4    Corver, J.5    Lenches, E.6
  • 16
    • 70849088745 scopus 로고    scopus 로고
    • Cross-talk between Rac1 and Cdc42 GTPases regulates formation of filopodia required for dengue virus type-2 entry into HMEC-1 cells
    • 19710257
    • Zamudio-Meza H, Castillo-Alvarez A, González-Bonilla C, Meza I. Cross-talk between Rac1 and Cdc42 GTPases regulates formation of filopodia required for dengue virus type-2 entry into HMEC-1 cells. J Gen Virol. 2009;90:2902-2911. doi: 10.1099/vir.0.014159-0 PMID: 19710257
    • (2009) J Gen Virol. , vol.90 , pp. 2902-2911
    • Zamudio-Meza, H.1    Castillo-Alvarez, A.2    González-Bonilla, C.3    Meza, I.4
  • 17
    • 16844382354 scopus 로고    scopus 로고
    • Differential expression of domain III neutralizing epitopes on the envelope proteins of West Nile virus strains
    • 15823609
    • Li L, Barrett AD, Beasley DW. Differential expression of domain III neutralizing epitopes on the envelope proteins of West Nile virus strains. Virology. 2005;335:99-105. PMID: 15823609
    • (2005) Virology , vol.335 , pp. 99-105
    • Li, L.1    Barrett, A.D.2    Beasley, D.W.3
  • 18
    • 24044451205 scopus 로고    scopus 로고
    • Molecular mechanism of pathogenesis of dengue virus: Entry and fusion with target cell
    • 23105540
    • Jain S. Molecular mechanism of pathogenesis of dengue virus: entry and fusion with target cell. Indian J Clin Biochem. 2005;20:92-103. doi: 10.1007/BF02867407 PMID: 23105540
    • (2005) Indian J Clin Biochem. , vol.20 , pp. 92-103
    • Jain, S.1
  • 20
    • 0031823546 scopus 로고    scopus 로고
    • Dengue and dengue hemorrhagic fever
    • 9665979
    • Gubler DJ. Dengue and dengue hemorrhagic fever. Clin Microbiol Rev. 1998;11:480-496. PMID: 9665979
    • (1998) Clin Microbiol Rev. , vol.11 , pp. 480-496
    • Gubler, D.J.1
  • 21
    • 0030764559 scopus 로고    scopus 로고
    • Dengue virus infectivity depends on envelope protein binding to target cell heparan sulfate
    • 9256277
    • Chen Y, Maguire T, Hileman RE, Fromm JR, Esko JD, Linhardt RJ, et al. Dengue virus infectivity depends on envelope protein binding to target cell heparan sulfate. Nat Med. 1997;3:866-871. PMID: 9256277
    • (1997) Nat Med. , vol.3 , pp. 866-871
    • Chen, Y.1    Maguire, T.2    Hileman, R.E.3    Fromm, J.R.4    Esko, J.D.5    Linhardt, R.J.6
  • 22
    • 84877146650 scopus 로고    scopus 로고
    • Improved method for linear B-cell epitope prediction using Antigen's primary sequence
    • 23667458
    • Singh H, Ansari HR, Raghava GP. Improved method for linear B-cell epitope prediction using Antigen's primary sequence. PloS one. 2013;8:e62216. doi: 10.1371/journal.pone.0062216 PMID: 23667458
    • (2013) PloS One , vol.8 , pp. e62216
    • Singh, H.1    Ansari, H.R.2    Raghava, G.P.3
  • 23
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular evolutionary genetics analysis version 6.0
    • 24132122
    • Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol Biol Evol. 2013;30:2725-2729. doi: 10.1093/molbev/mst197 PMID: 24132122
    • (2013) Mol Biol Evol. , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3    Filipski, A.4    Kumar, S.5
  • 24
    • 0025605617 scopus 로고
    • A semi-empirical method for prediction of antigenic determinants on protein antigens
    • 1702393
    • Kolaskar A, Tongaonkar PC. A semi-empirical method for prediction of antigenic determinants on protein antigens. FEBS Lett. 1990;276:172-174. PMID: 1702393
    • (1990) FEBS Lett. , vol.276 , pp. 172-174
    • Kolaskar, A.1    Tongaonkar, P.C.2
  • 25
    • 0022249654 scopus 로고
    • Induction of hepatitis A virus-neutralizing antibody by a virusspecific synthetic peptide
    • 2991600
    • Emini EA, Hughes JV, Perlow D, Boger J. Induction of hepatitis A virus-neutralizing antibody by a virusspecific synthetic peptide. J Virol. 1985;55:836-839. PMID: 2991600
    • (1985) J Virol. , vol.55 , pp. 836-839
    • Emini, E.A.1    Hughes, J.V.2    Perlow, D.3    Boger, J.4
  • 26
    • 0021918946 scopus 로고
    • Prediction of chain flexibility in proteins
    • Karplus P, Schulz G. Prediction of chain flexibility in proteins. Naturwissenschaften. 1985;72:212-213.
    • (1985) Naturwissenschaften , vol.72 , pp. 212-213
    • Karplus, P.1    Schulz, G.2
  • 27
    • 63849246525 scopus 로고    scopus 로고
    • Protein structure prediction on the Web: A case study using the Phyre server
    • 19247286
    • Kelley LA, Sternberg MJ. Protein structure prediction on the Web: a case study using the Phyre server. Nat Protoc. 2009;4:363-371. doi: 10.1038/nprot.2009.2 PMID: 19247286
    • (2009) Nat Protoc. , vol.4 , pp. 363-371
    • Kelley, L.A.1    Sternberg, M.J.2
  • 28
    • 58049187138 scopus 로고    scopus 로고
    • ElliPro: A new structure-based tool for the prediction of antibody epitopes
    • 19055730
    • Ponomarenko J, Bui H-H, Li W, Fusseder N, Bourne PE, Sette A, et al. ElliPro: a new structure-based tool for the prediction of antibody epitopes. BMC bioinformatics. 2008;9:514. doi: 10.1186/1471-2105-9-514 PMID: 19055730
    • (2008) BMC Bioinformatics , vol.9 , pp. 514
    • Ponomarenko, J.1    Bui, H.-H.2    Li, W.3    Fusseder, N.4    Bourne, P.E.5    Sette, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.