메뉴 건너뛰기




Volumn 464, Issue 4, 2015, Pages 1040-1047

Transcriptomic changes during maize roots development responsive to Cadmium (Cd) pollution using comparative RNAseq-based approach

Author keywords

Co expression modules; Comparative RNAseq based approach; Differential expression genes (DEGs); Maize (Zea mays)

Indexed keywords

CADMIUM; THAUMATIN; TRANSCRIPTION FACTOR; TRANSCRIPTOME; VEGETABLE PROTEIN; SOIL POLLUTANT;

EID: 84940461362     PISSN: 0006291X     EISSN: 10902104     Source Type: Journal    
DOI: 10.1016/j.bbrc.2015.07.064     Document Type: Article
Times cited : (43)

References (23)
  • 1
    • 18544371009 scopus 로고    scopus 로고
    • Metals, toxicity and oxidative stress
    • M. Valko, H. Morris, and M. Cronin Metals, toxicity and oxidative stress Curr. Med. Chem. 12 2005 1161 1208
    • (2005) Curr. Med. Chem. , vol.12 , pp. 1161-1208
    • Valko, M.1    Morris, H.2    Cronin, M.3
  • 2
    • 78649632430 scopus 로고    scopus 로고
    • Targeted mapping of Cdu1, A major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum)
    • K. Wiebe, N.S. Harris, J.D. Faris, J.M. Clarke, R.E. Knox, G.J. Taylor, and C.J. Pozniak Targeted mapping of Cdu1, a major locus regulating grain cadmium concentration in durum wheat (Triticum turgidum L. var durum) Theor. Appl. Genet. 121 2010 1047 1058
    • (2010) Theor. Appl. Genet. , vol.121 , pp. 1047-1058
    • Wiebe, K.1    Harris, N.S.2    Faris, J.D.3    Clarke, J.M.4    Knox, R.E.5    Taylor, G.J.6    Pozniak, C.J.7
  • 4
    • 37149050720 scopus 로고    scopus 로고
    • Selection and breeding of plant cultivars to minimize cadmium accumulation
    • C.A. Grant, J.M. Clarke, S. Duguid, and R.L. Chaney Selection and breeding of plant cultivars to minimize cadmium accumulation Sci. Total Environ. 390 2008 301 310
    • (2008) Sci. Total Environ. , vol.390 , pp. 301-310
    • Grant, C.A.1    Clarke, J.M.2    Duguid, S.3    Chaney, R.L.4
  • 5
    • 84865074382 scopus 로고    scopus 로고
    • RSeQC: Quality control of RNA-seq experiments
    • L. Wang, S. Wang, and W. Li RSeQC: quality control of RNA-seq experiments Bioinformatics 28 2012 2184 2185
    • (2012) Bioinformatics , vol.28 , pp. 2184-2185
    • Wang, L.1    Wang, S.2    Li, W.3
  • 7
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: An R package for weighted correlation network analysis
    • P. Langfelder, and S. Horvath WGCNA: an R package for weighted correlation network analysis BMC Bioinform. 9 2008 559
    • (2008) BMC Bioinform. , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 8
    • 77954299992 scopus 로고    scopus 로고
    • AgriGO: A GO analysis toolkit for the agricultural community
    • gkq310
    • Z. Du, X. Zhou, Y. Ling, Z. Zhang, and Z. Su agriGO: a GO analysis toolkit for the agricultural community Nucleic Acids Res. 2010 gkq310
    • (2010) Nucleic Acids Res.
    • Du, Z.1    Zhou, X.2    Ling, Y.3    Zhang, Z.4    Su, Z.5
  • 10
    • 12144291195 scopus 로고    scopus 로고
    • Mapman: A user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
    • O. Thimm, O. Bläsing, Y. Gibon, A. Nagel, S. Meyer, P. Krüger, J. Selbig, L.A. Müller, S.Y. Rhee, and M. Stitt Mapman: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes Plant J. 37 2004 914 939
    • (2004) Plant J. , vol.37 , pp. 914-939
    • Thimm, O.1    Bläsing, O.2    Gibon, Y.3    Nagel, A.4    Meyer, S.5    Krüger, P.6    Selbig, J.7    Müller, L.A.8    Rhee, S.Y.9    Stitt, M.10
  • 11
    • 84905090335 scopus 로고    scopus 로고
    • PlantTFDB 3.0: A portal for the functional and evolutionary study of plant transcription factors
    • gkt1016
    • J. Jin, H. Zhang, L. Kong, G. Gao, and J. Luo PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors Nucleic Acids Res. 2013 gkt1016
    • (2013) Nucleic Acids Res.
    • Jin, J.1    Zhang, H.2    Kong, L.3    Gao, G.4    Luo, J.5
  • 14
    • 33750475626 scopus 로고    scopus 로고
    • Quantitative real-time RT-PCR data analysis: Current concepts and the novel "gene expression's C T difference" formula
    • J.H. Schefe, K.E. Lehmann, I.R. Buschmann, T. Unger, and H. Funke-Kaiser Quantitative real-time RT-PCR data analysis: current concepts and the novel "gene expression's C T difference" formula J. Mol. Med. 84 2006 901 910
    • (2006) J. Mol. Med. , vol.84 , pp. 901-910
    • Schefe, J.H.1    Lehmann, K.E.2    Buschmann, I.R.3    Unger, T.4    Funke-Kaiser, H.5
  • 15
    • 84922631260 scopus 로고    scopus 로고
    • The Major Facilitator Superfamily Transporter ZIFL2 Modulates Cesium and Potassium Homeostasis in Arabidopsis
    • E. Remy, T.R. Cabrito, R.A. Batista, M.C. Teixeira, I. Sá-Correia, and P. Duque The Major Facilitator Superfamily Transporter ZIFL2 Modulates Cesium and Potassium Homeostasis in Arabidopsis Plant Cell Physiol. 56 2015 148 162
    • (2015) Plant Cell Physiol. , vol.56 , pp. 148-162
    • Remy, E.1    Cabrito, T.R.2    Batista, R.A.3    Teixeira, M.C.4    Sá-Correia, I.5    Duque, P.6
  • 16
    • 25844489990 scopus 로고    scopus 로고
    • P 1B-ATPases-an ancient family of transition metal pumps with diverse functions in plants
    • L.E. Williams, and R.F. Mills P 1B-ATPases-an ancient family of transition metal pumps with diverse functions in plants Trends Plant Sci. 10 2005 491 502
    • (2005) Trends Plant Sci. , vol.10 , pp. 491-502
    • Williams, L.E.1    Mills, R.F.2
  • 17
    • 0035065222 scopus 로고    scopus 로고
    • Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins
    • S. Khuri, F.T. Bakker, and J.M. Dunwell Phylogeny, function, and evolution of the cupins, a structurally conserved, functionally diverse superfamily of proteins Mol. Biol. Evol. 18 2001 593 605
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 593-605
    • Khuri, S.1    Bakker, F.T.2    Dunwell, J.M.3
  • 18
    • 77952555059 scopus 로고    scopus 로고
    • Two-dimensional liquid chromatography technique coupled with mass spectrometry analysis to compare the proteomic response to cadmium stress in plants
    • G. Visioli, M. Marmiroli, and N. Marmiroli Two-dimensional liquid chromatography technique coupled with mass spectrometry analysis to compare the proteomic response to cadmium stress in plants BioMed. Res. Int. 2010 2010
    • (2010) BioMed. Res. Int. , vol.2010
    • Visioli, G.1    Marmiroli, M.2    Marmiroli, N.3
  • 20
    • 48249085699 scopus 로고    scopus 로고
    • Quantitative changes in protein expression of cadmium-exposed poplar plants
    • P. Kieffer, J. Dommes, L. Hoffmann, J.F. Hausman, and J. Renaut Quantitative changes in protein expression of cadmium-exposed poplar plants Proteomics 8 2008 2514 2530
    • (2008) Proteomics , vol.8 , pp. 2514-2530
    • Kieffer, P.1    Dommes, J.2    Hoffmann, L.3    Hausman, J.F.4    Renaut, J.5
  • 21
    • 0036273510 scopus 로고    scopus 로고
    • The jasmonate signal pathway
    • J.G. Turner, C. Ellis, and A. Devoto The jasmonate signal pathway Plant Cell 14 2002 S153 S164
    • (2002) Plant Cell , vol.14 , pp. S153-S164
    • Turner, J.G.1    Ellis, C.2    Devoto, A.3
  • 23
    • 0034031727 scopus 로고    scopus 로고
    • 12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis
    • F. Schaller, C. Biesgen, C. Müssig, T. Altmann, and E.W. Weiler 12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis Planta 210 2000 979 984
    • (2000) Planta , vol.210 , pp. 979-984
    • Schaller, F.1    Biesgen, C.2    Müssig, C.3    Altmann, T.4    Weiler, E.W.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.