Incorporation of extra amino acids in peptide recognition probe to improve specificity and selectivity of an electrochemical peptide-based sensor

Analytica Chimica Acta

Volumn 886, Issue , 2015, Pages 157-164

  Zaitouna, Anita J ^a   Maben, Alex J ^a   Lai, Rebecca Y ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

Author keywords

Alternating current voltammetry; Antifouling agents; Cyclic voltammetry; Electrochemical peptide based sensors; Human immunodeficiency virus antibodies; Methylene blue

Indexed keywords

AMINO ACIDS; AROMATIC COMPOUNDS; ASCORBIC ACID; CYCLIC VOLTAMMETRY; DISEASES; PROBES; VIRUSES;

ALTERNATING CURRENT; ANTIFOULING AGENTS; HUMAN IMMUNODEFICIENCY VIRUS; METHYLENE BLUE; PEPTIDE RECOGNITION; RECOGNITION ELEMENT; SELECTIVITY FACTORS; TARGET CONCENTRATIONS;

PEPTIDES;

AMINO ACID DERIVATIVE; ANTIFOULING AGENT; HUMAN IMMUNODEFICIENCY VIRUS ANTIBODY; METHYLENE BLUE; AMINO ACID; PEPTIDE; THIOL DERIVATIVE;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING KINETICS; BIOSENSOR; CYCLIC POTENTIOMETRY; EQUIPMENT DESIGN; HUMAN; HYDROPHILICITY; IMMOBILIZATION; LIMIT OF DETECTION; MOLECULAR RECOGNITION; NUCLEIC ACID PROBE; PRIORITY JOURNAL; QUALITY CONTROL PROCEDURES; SALIVA ANALYSIS; SPECIFICITY AND SELECTIVITY; SURFACE PROPERTY; URINALYSIS; AMINO ACID SEQUENCE; CHEMISTRY; ELECTROCHEMICAL ANALYSIS; GENETIC PROCEDURES; HIV INFECTIONS; HUMAN IMMUNODEFICIENCY VIRUS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PROCEDURES; SALIVA; URINE; VIROLOGY;

HUMAN IMMUNODEFICIENCY VIRUS;

AMINO ACID SEQUENCE; AMINO ACIDS; BIOSENSING TECHNIQUES; ELECTROCHEMICAL TECHNIQUES; HIV; HIV INFECTIONS; HUMANS; METHYLENE BLUE; MOLECULAR SEQUENCE DATA; PEPTIDES; SALIVA; SULFHYDRYL COMPOUNDS; URINE;

EID: 84940448990     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2015.05.037     Document Type: Article

References (57)

1. Centers for Disease Control HIV Surveillance Report 2012 2014, 24:1-35.
2. Emmenegger C.R., Brynda E., Riedel T., Sedlakova Z., Houska M., Alles A.B. Interaction of blood plasma with antifouling surfaces. Langmuir 2009, 25:6328-6333.
3. Gal J.-Y., Fovet Y., Adib-Yadzi M. About a synthetic saliva for in vitro studies. Talanta 2001, 53:1103-1115.
4. Krebs H.A. Chemical composition of blood plasma and serum. Annu. Rev. Biochem. 1950, 19:409-430.
5. Tang Y.-R., Zhang S.-Q., Xiong Y., Zhao Y., Fu H., Zhang H.-P., Xiong K.-M. Studies of five micro element contents in human serum, hair, and fingernails correlated with aged hypertension and coronary heart disease. Biol. Trace Elem. Res. 2003, 92:97-103.
6. Hifumi E., Kubota N., Niimi Y., Shimizu K., Egashira N. Elimination of ingredients effect to improve detection of anti-HIV-1 p24 antibodies in human serum using SPR apparatus. Anal. Sci. 2002, 18:863-867.
7. Marquette C.A., Imbert-Laurenceau E., Mallet F., Chaix C., Mandrand B., Blum L.J. Electroaddressed immobilization of recombinant HIV-1 p24 capsid protein onto screen-printed arrays for serological testing. Anal. Biochem. 2005, 340:14-23.
8. Schramm W., Angulo G.B., Torres P.C., Burgess-Cassler A. A simple saliva-based test for detecting antibodies to human immunodeficiency virus. Clin. Diagn. Lab. Immunol. 1999, 6:577-580.
9. Bahadir E.B., Sezgintürk M.K. Applications of commercial biosensors in clinical, food, environmental and biothreat/biowarfare analyses. Anal. Biochem. 2015, 478:107-120.
10. Gerasimov J.Y., Lai R.Y. An electrochemical peptide-based biosensing platform for HIV detection. Chem. Commun. 2010, 46:395-397.
11. Zhao S., Yang W., Lai R.Y. A folding-based electrochemical aptasensor for detection of vascular endothelial growth factor in human whole blood. Biosens. Bioelectron. 2011, 26:2442-2447.
12. Yang W., Gerasimov J.Y., Lai R.Y. Folding-based electrochemical DNA sensor fabricated on a gold-plated screen-printed carbon electrode. Chem. Commun. 2009, 2902-2904.
13. Yu Z., Lai R.Y. A reagentless and reusable electrochemical DNA sensor based on target hybridization-induced stem-loop probe formation. Chem. Commun. 2012, 48:10523-10525.
14. Choi S., Chae J. Methods of reducing non-specific adsorption in microfluidic biosensors. J. Micromech. Microeng. 2010, 20:075015.
15. Singh R., Suni I.I. Minimizing nonspecific adsorption in protein biosensors that utilize electrochemical impedance spectroscopy. J. Electrochem. Soc. 2010, 157:J334-J337.
16. Yu Q., Zhang Y., Wang H., Brash J., Chen H. Anti-fouling bioactive surfaces. Acta Biomater. 2011, 7:1550-1557.
17. Bozzini S., Petrini P., Tanzi M.C., Zürcher S., Tosatti S. Poly(ethylene glycol) and hydroxy functionalized alkane phosphate mixed self-assembled monolayers to control nonspecific adsorption of proteins on titanium oxide surfaces. Langmuir 2010, 26:6529-6534.
18. Engkvist O., Karlström G. Monte Carlo simulation study of short poly(ethylene oxide) chains at different concentrations. J. Phys. Chem. B 1997, 101:1631-1633.
19. Gillich T., Benetti E.M., Rakhmatullina E., Konradi R., Li W., Zhang A., Schlüter A.D., Textor M. Self-assembly of focal point oligo-catechol ethylene glycol dendrons on titanium oxide surfaces: adsorption kinetics, surface characterization, and nonfouling properties. J. Am. Chem. Soc. 2011, 133:10940-10950.
20. Heeb R., Lee S., Venkataraman N.V., Spencer N.D. Influence of salt on the aqueous lubrication properties of end-grafted, ethylene-glycol-based self-assembled monolayers. ACS Appl. Mater. Interfaces 2009, 1:1105-1112.
21. Löfás S. Dextran modified self-assembled monolayer surfaces for use in biointeraction analysis with surface plasmon resonance. Pure Appl. Chem. 1995, 67:829-834.
22. Tosatti S., Schwartz Z., Campbell C., Cochran D.L., VandeVondele S., Hubbell J.A., Denzer A., Simpson J., Wieland M., Lohmann C.H., Textor M., Boyan B.D. RGD-containing peptide GCRGYGRGDSPG reduces enhancement of osteoblast differentiation by poly(L-lysine)-graft-poly(ethylene glycol)-coated titanium surfaces. J. Biomed. Mater. Res. A 2004, 68:458-472.
23. Tosatti S., De Paul S.M., Askendal A., VandeVondele S., Hubbell J.A., Tengvall P., Textor M. Peptide functionalized poly(L-lysine)-g-poly(ethylene glycol) on titanium: resistance to protein adsorption in full heparinized human blood plasma. Biomaterials 2003, 24:4949-4958.
24. Chen Y., Cruz-Chu E.R., Woodard J.C., Gartia M.R., Schulten K., Liu L. Electrically induced conformational change of peptides on metallic nanosurfaces. ACS Nano 2012, 6:8847-8856.
25. Doneux T., Bouffier L., Mello L.V., Rigden D.J., Kejnovská I., Fernig D.G., Higgins S.J., Nichols R.J. Molecular dynamics and electrochemical investigations of a pH-responsive peptide monolayer. J. Phys. Chem. C 2009, 113:6792-6799.
26. Fellet M.S., Bartels J.L., Bi B., Moeller K.D. Site-selective chemistry and attachment of peptides to the surface of a microelectrode array. J. Am. Chem. Soc. 2012, 134:16891-16898.
27. Gerasimov J.Y., Lai R.Y. Design and characterization of an electrochemical peptide-based sensor fabricated via "click" chemistry. Chem. Commun. 2011, 47:8688-8690.
28. Gooding J.J., Darwish N. The rise of self-assembled monolayers for fabricating electrochemical biosensors-an interfacial perspective. Chem. Rec. 2012, 12:92-105.
29. Labib M., Shipman P.O., Martić S., Kraatz H.-B. Towards an early diagnosis of HIV infection: an electrochemical approach for detection of HIV-1 reverse transcriptase enzyme. Analyst 2011, 136:708-715.
30. Mahmoud K.A., Luong J.H.T. A sensitive electrochemical assay for early detection of HIV-1 protease using ferrocene-peptide conjugate/Au nanoparticle/single walled carbon nanotube modified electrode. Anal. Lett. 2010, 43:1680-1687.
31. Martić S., Labib M., Kraatz H.-B. On chip electrochemical detection of sarcoma protein kinase and HIV-1 reverse transcriptase. Talanta 2011, 85:2430-2436.
32. McQuistan A., Zaitouna A.J., Echeverria E., Lai R.Y. Use of thiolated oligonucleotides as anti-fouling diluents in electrochemical peptide-based sensors. Chem. Commun. 2014, 50:4690-4692.
33. Nowinski A.K., Sun F., White A.D., Keefe A.J., Jiang S. Sequence, structure, and function of peptide self-assembled monolayers. J. Am. Chem. Soc. 2012, 134:6000-6005.
34. Pavan S., Berti F. Short peptides as biosensor transducers. Anal. Bioanal. Chem. 2012, 402:3055-3070.
35. White R.J., Kallewaard H.M., Hsieh W., Patterson A.S., Kasehagen J.B., Cash K.J., Uzawa T., Soh H.T., Plaxco K.W. Wash-free, electrochemical platform for the quantitative multiplexed detection of specific antibodies. Anal. Chem. 2012, 84:1098-1103.
36. Zaitouna A.J., Lai R.Y. An electrochemical peptide-based Ara h 2 antibody sensor fabricated on a nickel(II)-nitrilotriacetic acid self-assembled monolayer using a His-tagged peptide. Anal. Chim. Acta 2014, 828:85-91.
37. Salamifar S.E., Lai R.Y. Application of electrochemical surface plasmon resonance spectroscopy for characterization of electrochemical DNA sensors. Colloid Surf. B 2014, 122:835-839.
38. Miller C., Cuendet P., Grätzel M. Adsorbed [U+2375]-hydroxy thiol monolayers on gold electrodes: evidence for electron tunneling to redox species in solution. J. Phys. Chem. 1991, 95:877-886.
39. Bain C.D., Whitesides G.M. Formation of monolayers by the co-adsorption of thiols on gold: variation in the length of the alkyl chain. J. Am. Chem. Soc. 1989, 111. 7164-6175.
40. Huang K.-C., White R.J. Random walk on a leash: a simple single-molecule diffusion model for surface-tethered redox molecules with flexible linkers. J. Am. Chem. Soc. 2013, 135:12808-12817.
41. Laviron E. General expression of the linear potential sweep voltammogram in the case of diffusionless electrochemical systems. J. Electroanal. Chem. 1979, 101:19-28.
42. Frahm N., Linde C., Brander C. Identification of HIV-derived, HLA class I restricted CTL epitopes: insights into TCR repertoire, CTL escape and viral fitness. Hiv. Mol. Immunol. 2006, 7-4752.
43. Tonarelli G., Lottersberger J., Salvetti J.L., Jacchieri S., Silva-Lucca R.A., Beltramin L.M. Secondary structure-improved bioaffinity correlation in elongated and modified synthetic epitope peptides from p24 HIV-1 core protein. Lett. Pept. Sci. 2000, 7:217.
44. Arnold U., Leich F., Neumann P., Lilie H., Ulbrich-Hofmann R. Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor. FEBS J. 2010, 278:331-340.
45. Bolduc O.R., Clouthier C.M., Pelletier J.N., Masson J.-F. Peptide self-assembled monolayers for label-free and unamplified surface plasmon resonance biosensing in crude cell lysate. Anal. Chem. 2009, 81:6779-6788.
46. Huang C.-J., Li Y., Jiang S. Zwitterionic polymer-based platform with two-layer architecture for ultra low fouling and high protein loading. Anal. Chem. 2012, 84:3440-3445.
47. White A.D., Nowinski A.K., Huang W., Keefe A.J., Sun F., Jiang S. Decoding nonspecific interactions from nature. Chem. Sci. 2012, 3:3488-3494.
48. Yang W., Lai R.Y. Comparison of the stem-loop and linear probe-based electrochemical DNA Sensors by alternating current voltammetry and cyclic voltammetry. Langmuir 2011, 27:14669-14677.
49. Lai R.Y., Walker B., Stormberg K., Zaitouna A.J., Yang W. Electrochemical techniques for characterization of stem-loop probe and linear probe-based DNA sensors. Methods 2013, 64:267-275.
50. Sumner J.J., Creager S.E. Topological effects in bridge-mediated electron transfer between redox molecules and metal electrodes. J. Am. Chem. Soc. 2000, 122:11914-11920.
51. Sumner J.J., Weber K.S., Hockett L.A., Creager S.E. Long-range heterogeneous electron transfer between ferrocene and gold mediated by n-alkane and n-alkyl-carboxamide bridges. J. Phys. Chem. B 2000, 104:7449-7454.
52. Subramanian R., Lakshminarayanan V. A study of kinetics of adsorption of alkanethiols on gold using electrochemical impedance spectroscopy. Electrochim. Acta 2000, 45:4501-4509.
53. Douglass E.F., Driscoll P.F., Liu D., Burnham N.A., Lambert C.R., McGimpsey W.G. Effect of electrode roughness on the capacitive behavior of self-assembled monolayers. Anal. Chem. 2008, 80:7670-7677.
54. Subramanian R., Lakshminarayanan V. Effect of surface roughness on the self-assembly of octadecanethiol monolayer onto polycrystalline noble metal surfaces. Curr. Sci. 1999, 76:665-669.
55. Creager S.E., Hockett L.A., Rowe G.K. Consequences of microscopic surface roughness for molecular self-assembly. Langmuir 1992, 854-861.
56. Farjami E., Campos R., Ferapontova E.E. Effect of the DNA end of tethering to electrodes on electron transfer in methylene blue-labeled DNA duplexes. Langmuir 2012, 28:16218-16226.
57. Anne A., Demaille C., Moiroux J. Elastic bound diffusion. Dynamics of ferrocene-labeled poly(ethylene glycol) chains terminally attached to the outermost monolayer of successively self-assembled monolayers of immunoglobulins. J. Am. Chem. Soc. 1991, 121:10379-10388.