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Volumn 37, Issue 7, 2014, Pages 474-479

Microbacterium endophyticum sp. nov. and Microbacterium halimionae sp. nov., endophytes isolated from the salt-marsh plant Halimione portulacoides and emended description of the genus Microbacterium

Author keywords

Endophytic; Halophytes; Microbacterium; Salt marsh

Indexed keywords

B2BETA PEPTIDOGLYCAN; FATTY ACID; ORNITHINE; PEPTIDOGLYCAN; RNA 16S; UNCLASSIFIED DRUG;

EID: 84940164071     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2014.08.004     Document Type: Article
Times cited : (42)

References (36)
  • 1
    • 33847388553 scopus 로고    scopus 로고
    • Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting
    • Alves A., Phillips A.J.L., Henriques I., Correia A. Rapid differentiation of species of Botryosphaeriaceae by PCR fingerprinting. Res. Microbiol. 2007, 158:112-121.
    • (2007) Res. Microbiol. , vol.158 , pp. 112-121
    • Alves, A.1    Phillips, A.J.L.2    Henriques, I.3    Correia, A.4
  • 2
    • 0038322826 scopus 로고    scopus 로고
    • Isolation, in planta detection, and culture of endophytic bacteria and fungi
    • American Society for Microbiology, Washington, C.J. Hurst, R.L. Crawford, G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, M.V. Walter (Eds.)
    • Bacon C.W., Glenn A.E., Hinton D.M. Isolation, in planta detection, and culture of endophytic bacteria and fungi. Manual of Environmental Microbiology 2002, 543-553. American Society for Microbiology, Washington. C.J. Hurst, R.L. Crawford, G.R. Knudsen, M.J. McInerney, L.D. Stetzenbach, M.V. Walter (Eds.).
    • (2002) Manual of Environmental Microbiology , pp. 543-553
    • Bacon, C.W.1    Glenn, A.E.2    Hinton, D.M.3
  • 3
    • 0000719073 scopus 로고
    • Alkaline solutions for pH control
    • Bates R.G., Bower V.E. Alkaline solutions for pH control. Anal. Chem. 1956, 28:1322-1324.
    • (1956) Anal. Chem. , vol.28 , pp. 1322-1324
    • Bates, R.G.1    Bower, V.E.2
  • 4
    • 0034926894 scopus 로고    scopus 로고
    • Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov
    • Behrendt U., Ulrich A., Schumann P. Description of Microbacterium foliorum sp. nov. and Microbacterium phyllosphaerae sp. nov., isolated from the phyllosphere of grasses and the surface litter after mulching the sward, and reclassification of Aureobacterium resistens (Funke et al. 1998) as Microbacterium resistens comb. nov. Int. J. Syst. Evol. Microbiol. 2001, 51:1267-1276.
    • (2001) Int. J. Syst. Evol. Microbiol. , vol.51 , pp. 1267-1276
    • Behrendt, U.1    Ulrich, A.2    Schumann, P.3
  • 5
    • 77950927731 scopus 로고    scopus 로고
    • Arsenic-resistant bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics
    • Cavalca L., Zanchi R., Corsini A., Colombo M., Romagnoli C., Canzi E., Andreoni V. Arsenic-resistant bacteria associated with roots of the wild Cirsium arvense (L.) plant from an arsenic polluted soil, and screening of potential plant growth-promoting characteristics. Syst. Appl. Microbiol. 2010, 33:154-164.
    • (2010) Syst. Appl. Microbiol. , vol.33 , pp. 154-164
    • Cavalca, L.1    Zanchi, R.2    Corsini, A.3    Colombo, M.4    Romagnoli, C.5    Canzi, E.6    Andreoni, V.7
  • 7
    • 0036739319 scopus 로고    scopus 로고
    • Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov
    • Cleenwerck I., Vandemeulebroecke K., Janssens D., Swings J. Re-examination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int. J. Syst. Evol. Microbiol. 2002, 52:1551-1558.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1551-1558
    • Cleenwerck, I.1    Vandemeulebroecke, K.2    Janssens, D.3    Swings, J.4
  • 8
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki T., Hashimoto Y., Yabuuchi E. Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Sys. Bacteriol. 1989, 39:224-229.
    • (1989) Int. J. Sys. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 9
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: a maximum likelihood approach
    • Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 1981, 17:368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 10
    • 0035960740 scopus 로고    scopus 로고
    • Application of rep-PCR fingerprinting for identification of Lactobacillus species
    • Gevers D., Huys G., Swings J. Application of rep-PCR fingerprinting for identification of Lactobacillus species. FEMS Microbiol. Lett. 2001, 205:31-36.
    • (2001) FEMS Microbiol. Lett. , vol.205 , pp. 31-36
    • Gevers, D.1    Huys, G.2    Swings, J.3
  • 11
    • 0032434673 scopus 로고    scopus 로고
    • Evaluation of microplate DNA-DNA hybridization method compared with the initial renaturation method
    • Goris J., Suzuki K., De Vos P., Nakase T., Kersters K. Evaluation of microplate DNA-DNA hybridization method compared with the initial renaturation method. Can. J. Microbiol. 1998, 44:1148-1153.
    • (1998) Can. J. Microbiol. , vol.44 , pp. 1148-1153
    • Goris, J.1    Suzuki, K.2    De Vos, P.3    Nakase, T.4    Kersters, K.5
  • 12
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis D.M., Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 1993, 42:182-192.
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 13
    • 33749040256 scopus 로고    scopus 로고
    • Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov
    • Kageyama A., Takahashi Y., Omura S. Microbacterium deminutum sp. nov., Microbacterium pumilum sp. nov. and Microbacterium aoyamense sp. nov. Int. J. Syst. Evol. Microbiol. 2006, 56:2113-2117.
    • (2006) Int. J. Syst. Evol. Microbiol. , vol.56 , pp. 2113-2117
    • Kageyama, A.1    Takahashi, Y.2    Omura, S.3
  • 14
  • 16
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 1980, 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 17
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Wiley, Chichester, E. Stackebrandt, M. Goodfellow (Eds.)
    • Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. Wiley, Chichester. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 19
    • 0001369336 scopus 로고
    • A buffer solution for colorimetric comparison
    • McIlvaine T.C. A buffer solution for colorimetric comparison. J. Biol. Chem. 1921, 49:183-186.
    • (1921) J. Biol. Chem. , vol.49 , pp. 183-186
    • McIlvaine, T.C.1
  • 20
    • 0000198211 scopus 로고
    • Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography
    • Mesbah M., Premachandran U., Whitman W.B. Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int. J. Syst. Bacteriol. 1989, 39:159-167.
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 159-167
    • Mesbah, M.1    Premachandran, U.2    Whitman, W.B.3
  • 21
    • 84881009604 scopus 로고    scopus 로고
    • Microbacterium saccharophilum sp. nov., a novel species isolated from a sucrose refining factory in Japan
    • Ohta Y., Ito T., Mori K., Nishi S., Shimane Y., Mikuni K., Hatada Y. Microbacterium saccharophilum sp. nov., a novel species isolated from a sucrose refining factory in Japan. Int. J. Syst. Evol. Microbiol. 2013, 63:2765-2769.
    • (2013) Int. J. Syst. Evol. Microbiol. , vol.63 , pp. 2765-2769
    • Ohta, Y.1    Ito, T.2    Mori, K.3    Nishi, S.4    Shimane, Y.5    Mikuni, K.6    Hatada, Y.7
  • 23
    • 84891817929 scopus 로고    scopus 로고
    • LPSN - list of prokaryotic names with standing in nomenclature
    • Database issue
    • Parte A.C. LPSN - list of prokaryotic names with standing in nomenclature. Nucleic Acids Res. 2014, 42:D613-D616. Database issue.
    • (2014) Nucleic Acids Res. , vol.42 , pp. D613-D616
    • Parte, A.C.1
  • 24
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N., Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 25
    • 0001859084 scopus 로고
    • Identification of bacteria by gas chromatography of cellular fatty acids
    • Sasser M. Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl. 1990, 20:1-6.
    • (1990) USFCC Newsl. , vol.20 , pp. 1-6
    • Sasser, M.1
  • 26
    • 83155182859 scopus 로고    scopus 로고
    • Peptidoglycan structure
    • Schumann P. Peptidoglycan structure. Methods Microbiol. 2011, 38:101-129.
    • (2011) Methods Microbiol. , vol.38 , pp. 101-129
    • Schumann, P.1
  • 28
    • 0031827673 scopus 로고    scopus 로고
    • Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium
    • Takeuchi M., Hatano K. Union of the genera Microbacterium Orla-Jensen and Aureobacterium Collins et al. in a redefined genus Microbacterium. Int. J. Syst. Bacteriol. 1998, 48:739-747.
    • (1998) Int. J. Syst. Bacteriol. , vol.48 , pp. 739-747
    • Takeuchi, M.1    Hatano, K.2
  • 30
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 31
    • 0025324750 scopus 로고
    • A comparative study of the lipid composition of Halobacterium saccharovorum from various sources
    • Tindall B.J. A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst. Appl. Microbiol. 1990, 13:128-130.
    • (1990) Syst. Appl. Microbiol. , vol.13 , pp. 128-130
    • Tindall, B.J.1
  • 32
    • 0025098748 scopus 로고
    • Lipid composition of Halobacterium lacusprofundi
    • Tindall B.J. Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol. Lett. 1990, 66:199-202.
    • (1990) FEMS Microbiol. Lett. , vol.66 , pp. 199-202
    • Tindall, B.J.1
  • 35
    • 33745098675 scopus 로고    scopus 로고
    • Diverse bacteria associated with root nodules of spontaneous legumes in Tunisia and first report for nifH-like gene within the genera Microbacterium and Starkeya
    • Zakhia F., Jeder H., Willems A., Gillis M., Dreyfus B., Lajudie P.de. Diverse bacteria associated with root nodules of spontaneous legumes in Tunisia and first report for nifH-like gene within the genera Microbacterium and Starkeya. Microb. Ecol. 2006, 51:375-393.
    • (2006) Microb. Ecol. , vol.51 , pp. 375-393
    • Zakhia, F.1    Jeder, H.2    Willems, A.3    Gillis, M.4    Dreyfus, B.5    Lajudie, P.6
  • 36
    • 84862820740 scopus 로고    scopus 로고
    • Microbacterium marinum sp. nov., isolated from deep-sea water
    • Zhang L., Xi L., Ruan J., Huang Y. Microbacterium marinum sp. nov., isolated from deep-sea water. Syst. Appl. Microbiol. 2012, 35:81-85.
    • (2012) Syst. Appl. Microbiol. , vol.35 , pp. 81-85
    • Zhang, L.1    Xi, L.2    Ruan, J.3    Huang, Y.4


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