-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
11237011
-
International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature 409:860-921. PMID: 11237011
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
International Human Genome Sequencing Consortium1
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter J, Adams M, Myers E, Li P, Mural R, Sutton G, et al. (2001) The sequence of the human genome. Science (New York, NY) 291:1304-1351.
-
(2001)
Science (New York, NY)
, vol.291
, pp. 1304-1351
-
-
Venter, J.1
Adams, M.2
Myers, E.3
Li, P.4
Mural, R.5
Sutton, G.6
-
3
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
15496913
-
International Human Genome Sequencing Consortium (2004) Finishing the euchromatic sequence of the human genome. Nature 431:931-945. PMID: 15496913
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
International Human Genome Sequencing Consortium1
-
4
-
-
0018629550
-
Use of a cDNA library for studies on evolution and developmental expression of the chorion multigene families
-
519770
-
Sim G, Kafatos F, Jones C, Koehler M, Efstratiadis A, Maniatis T. (1979) Use of a cDNA library for studies on evolution and developmental expression of the chorion multigene families. Cell 18:1303-1316. PMID: 519770
-
(1979)
Cell
, vol.18
, pp. 1303-1316
-
-
Sim, G.1
Kafatos, F.2
Jones, C.3
Koehler, M.4
Efstratiadis, A.5
Maniatis, T.6
-
5
-
-
79959916374
-
Unamplified cap analysis of gene expression on a single-molecule sequencer
-
21596820
-
Kanamori-Katayama M, Itoh M, Kawaji H, Lassmann T, Katayama S, Kojima M, et al. (2011) Unamplified cap analysis of gene expression on a single-molecule sequencer. Genome Res 21:1150-9. doi: 10.1101/gr.115469.110 PMID: 21596820
-
(2011)
Genome Res
, vol.21
, pp. 1150-1159
-
-
Kanamori-Katayama, M.1
Itoh, M.2
Kawaji, H.3
Lassmann, T.4
Katayama, S.5
Kojima, M.6
-
6
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
12466850
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420:520-562. PMID: 12466850
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
Agarwal, P.6
-
7
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
16136131
-
Chimpanzee Sequencing and Analysis Consortium (2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87. PMID: 16136131
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
Chimpanzee Sequencing and Analysis Consortium1
-
8
-
-
80054973803
-
A high-resolution map of human evolutionary constraint using 29 mammals
-
21993624
-
Lindblad-Toh K, Garber M, Zuk O, Lin M, Parker B, Washietl S, et al. (2011) A high-resolution map of human evolutionary constraint using 29 mammals. Nature 478:476-482. doi: 10.1038/nature10530 PMID: 21993624
-
(2011)
Nature
, vol.478
, pp. 476-482
-
-
Lindblad-Toh, K.1
Garber, M.2
Zuk, O.3
Lin, M.4
Parker, B.5
Washietl, S.6
-
9
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE project
-
22955987
-
Harrow J, Frankish A, Gonzalez J, Tapanari E, Diekhans M, Kokocinski F, et al. (2012) GENCODE: the reference human genome annotation for the ENCODE project. Genome Res 22:1760-1774. doi: 10. 1101/gr.135350.111 PMID: 22955987
-
(2012)
Genome Res
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
Frankish, A.2
Gonzalez, J.3
Tapanari, E.4
Diekhans, M.5
Kokocinski, F.6
-
10
-
-
84897459814
-
An atlas of active enhancers across human cell types and tissues
-
Andersson R, Gebhard C, Miguel-Escalada I, Hoof I, Bornholdt J, Boyd M, et al. (2014) An atlas of active enhancers across human cell types and tissues. Nature. doi: 10.1038/nature12787
-
(2014)
Nature.
-
-
Andersson, R.1
Gebhard, C.2
Miguel-Escalada, I.3
Hoof, I.4
Bornholdt, J.5
Boyd, M.6
-
11
-
-
0033518234
-
From molecular to modular cell biology
-
10591225
-
Hartwell L, Hopfield J, Leibler S, Murray A (1999) From molecular to modular cell biology. Nature 402:C47-C52. PMID: 10591225
-
(1999)
Nature
, vol.402
, pp. C47-C52
-
-
Hartwell, L.1
Hopfield, J.2
Leibler, S.3
Murray, A.4
-
12
-
-
0024406857
-
A novel genetic system to detect protein-protein interactions
-
2547163
-
Fields S, Song O (1989) A novel genetic system to detect protein-protein interactions. Nature 340:245-246. PMID: 2547163
-
(1989)
Nature
, vol.340
, pp. 245-246
-
-
Fields, S.1
Song, O.2
-
13
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
10688190
-
Uetz P, Giot L, Cagney G, Mansfield T, Judson R, Knight J, et al. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403:623-627. PMID: 10688190
-
(2000)
Nature
, vol.403
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.4
Judson, R.5
Knight, J.6
-
14
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
11283351
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci USA 98:4569-4574. PMID: 11283351
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
15
-
-
84874947727
-
The BioGRID interaction database: 2013 update
-
23203989
-
Chatr-Aryamontri A, Breitkreutz B, Heinicke S, Boucher L, Winter A, Stark C, et al. (2013) The BioGRID interaction database: 2013 update. Nucleic Acids Res 41:D816-D823. doi: 10.1093/nar/gks1158 PMID: 23203989
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D816-D823
-
-
Chatr-Aryamontri, A.1
Breitkreutz, B.2
Heinicke, S.3
Boucher, L.4
Winter, A.5
Stark, C.6
-
16
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
9843569
-
Spellman P, Sherlock G, Zhang M, Iyer V, Anders K, Eisen M, et al. (1998) Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol Biol Cell 9:3273-3297. PMID: 9843569
-
(1998)
Mol Biol Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.1
Sherlock, G.2
Zhang, M.3
Iyer, V.4
Anders, K.5
Eisen, M.6
-
17
-
-
0036649020
-
Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
-
12089522
-
Wu L, Hughes T, Davierwala A, Robinson M, Stoughton R, Altschuler S. (2002) Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nat Genet 31:255-265. PMID: 12089522
-
(2002)
Nat Genet
, vol.31
, pp. 255-265
-
-
Wu, L.1
Hughes, T.2
Davierwala, A.3
Robinson, M.4
Stoughton, R.5
Altschuler, S.6
-
18
-
-
79751531038
-
The level of claudin-7 is reduced as an early event in colorectal carcinogenesis
-
21310043
-
Bornholdt J, Friis S, Godiksen S, Poulsen S, Eric S, Bisgaard H, et al. (2011) The level of claudin-7 is reduced as an early event in colorectal carcinogenesis. BMC Cancer 11:65. doi: 10.1186/1471-2407-11-65 PMID: 21310043
-
(2011)
BMC Cancer
, vol.11
, pp. 65
-
-
Bornholdt, J.1
Friis, S.2
Godiksen, S.3
Poulsen, S.4
Eric, S.5
Bisgaard, H.6
-
19
-
-
2942572926
-
Quantifying the relationship between co-expression, coregulation and gene function
-
15053845
-
Allocco D, Kohane I, Butte A (2004) Quantifying the relationship between co-expression, coregulation and gene function. BMC Bioinformatics 5:18. PMID: 15053845
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 18
-
-
Allocco, D.1
Kohane, I.2
Butte, A.3
-
20
-
-
70449115789
-
Co-expression tools for plant biology: Opportunities for hypothesis generation and caveats
-
Usadel B, Obayashi T, Mutwil M, Giorgi F, Bassel G, Tanimoto M, et al. (2009) Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant, Cell Environ 32:1633-1651.
-
(2009)
Plant, Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.4
Bassel, G.5
Tanimoto, M.6
-
21
-
-
77952687416
-
Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression
-
20507583
-
Shi Z, Derow C, Zhang B (2010) Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression. BMC Systems Biology 4:74. doi: 10.1186/1752-0509-4-74 PMID: 20507583
-
(2010)
BMC Systems Biology
, vol.4
, pp. 74
-
-
Shi, Z.1
Derow, C.2
Zhang, B.3
-
22
-
-
0141993704
-
A gene-coexpression network for global discovery of conserved genetic modules
-
Stuart J, Segal E, Koller D, Kim S (2003) A gene-coexpression network for global discovery of conserved genetic modules. Science (New York, NY) 302:249-255.
-
(2003)
Science (New York, NY)
, vol.302
, pp. 249-255
-
-
Stuart, J.1
Segal, E.2
Koller, D.3
Kim, S.4
-
23
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis R, Brown P (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science (New York, NY) 270:467-470.
-
(1995)
Science (New York, NY)
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.3
Brown, P.4
-
24
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
18516045
-
Mortazavi A, Williams B, Kenneth M, Schaeffer L, Wold B (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature Methods 5:621-628. doi: 10.1038/nmeth.1226 PMID: 18516045
-
(2008)
Nature Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.2
Kenneth, M.3
Schaeffer, L.4
Wold, B.5
-
25
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
22955616
-
The ENCODE Project Consortium (2012), An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74. doi: 10.1038/nature11247 PMID: 22955616
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
The ENCODE Project Consortium1
-
26
-
-
36048982458
-
Initial sequence and comparative analysis of the cat genome
-
17975172 Team AS
-
Pontius J, Mullikin J, Smith D, Team AS, Lindblad-Toh K, Gnerre S, et al. (2007) Initial sequence and comparative analysis of the cat genome. Genome Res 17:1675-1689. PMID: 17975172
-
(2007)
Genome Res
, vol.17
, pp. 1675-1689
-
-
Pontius, J.1
Mullikin, J.2
Smith, D.3
Lindblad-Toh, K.4
Gnerre, S.5
-
27
-
-
0037007048
-
Large-scale analysis of the human and mouse transcriptomes
-
11904358
-
Su A, Cooke M, Ching K, Hakak Y, Walker J, Wiltshire T, et al. (2002) Large-scale analysis of the human and mouse transcriptomes. Proc Natl Acad Sci USA 99:4465-4470. PMID: 11904358
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 4465-4470
-
-
Su, A.1
Cooke, M.2
Ching, K.3
Hakak, Y.4
Walker, J.5
Wiltshire, T.6
-
28
-
-
80054976678
-
The evolution of gene expression levels in mammalian organs
-
22012392
-
Brawand D, Soumillon M, Necsulea A, Julien P, Csrdi G, Harrigan P, et al. (2011) The evolution of gene expression levels in mammalian organs. Nature 478:343-348. doi: 10.1038/nature10532 PMID: 22012392
-
(2011)
Nature
, vol.478
, pp. 343-348
-
-
Brawand, D.1
Soumillon, M.2
Necsulea, A.3
Julien, P.4
Csrdi, G.5
Harrigan, P.6
-
29
-
-
77957235277
-
Cross-species queries of large gene expression databases
-
Le H, Oltvai Z, Ziv B (2010) Cross-species queries of large gene expression databases. Bioinformatics (Oxford, England) 26:2416-2423.
-
(2010)
Bioinformatics (Oxford, England)
, vol.26
, pp. 2416-2423
-
-
Le, H.1
Oltvai, Z.2
Ziv, B.3
-
30
-
-
84863529531
-
Matching experiments across species using expression values and textual information
-
Wise A, Oltvai Z, Ziv B (2012) Matching experiments across species using expression values and textual information. Bioinformatics (Oxford, England) 28:i258-i264.
-
(2012)
Bioinformatics (Oxford, England)
, vol.28
, pp. i258-i264
-
-
Wise, A.1
Oltvai, Z.2
Ziv, B.3
-
31
-
-
79551587720
-
Cytoscape 2.8: New features for data integration and network visualization
-
Smoot M, Ono K, Ruscheinski J, Wang P, Ideker T (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics (Oxford, England) 27:431-432.
-
(2011)
Bioinformatics (Oxford, England)
, vol.27
, pp. 431-432
-
-
Smoot, M.1
Ono, K.2
Ruscheinski, J.3
Wang, P.4
Ideker, T.5
-
32
-
-
20444504323
-
Uncovering the overlapping community structure of complex networks in nature and society
-
15944704
-
Palla G, Derényi I, Farkas I, Vicsek T (2005) Uncovering the overlapping community structure of complex networks in nature and society. Nature 435:814-818. PMID: 15944704
-
(2005)
Nature
, vol.435
, pp. 814-818
-
-
Palla, G.1
Derényi, I.2
Farkas, I.3
Vicsek, T.4
-
33
-
-
84941028211
-
COXPRESdb in 2015: Coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems
-
25392420
-
Okamura Y, Aoki Y, Obayashi T, Tadaka S, Ito S, Narise T, et al. (2015) COXPRESdb in 2015: coexpression database for animal species by DNA-microarray and RNAseq-based expression data with multiple quality assessment systems. Nucleic Acids Res 43:D82-6. doi: 10.1093/nar/gku1163 PMID: 25392420
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D82-D86
-
-
Okamura, Y.1
Aoki, Y.2
Obayashi, T.3
Tadaka, S.4
Ito, S.5
Narise, T.6
-
35
-
-
84876532610
-
Database resources of the national center for biotechnology information
-
23193264
-
NCBI Resource Coordinators (2013) Database resources of the national center for biotechnology information. Nucleic Acids Res 41:D8-DD20. doi: 10.1093/nar/gks1189 PMID: 23193264
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D8-DD20
-
-
NCBI Resource Coordinators1
-
36
-
-
84874253819
-
Gene ontology annotations and resources
-
23161678
-
Gene Ontology Consortium (2013) Gene ontology annotations and resources. Nucleic Acids Res 41:D530-D535. doi: 10.1093/nar/gks1050 PMID: 23161678
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D530-D535
-
-
Gene Ontology Consortium1
-
37
-
-
0037417817
-
Modular organization of cellular networks
-
12538875
-
Rives A, Galitski T (2003) Modular organization of cellular networks. Proc Natl Acad Sci USA 100:1128-1133. PMID: 12538875
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 1128-1133
-
-
Rives, A.1
Galitski, T.2
-
38
-
-
0142059836
-
Protein complexes and functional modules in molecular networks
-
14517352
-
Spirin V, Mirny L (2003) Protein complexes and functional modules in molecular networks. Proc Natl Acad Sci USA 100:12123-12128. PMID: 14517352
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 12123-12128
-
-
Spirin, V.1
Mirny, L.2
-
39
-
-
33748701649
-
Detecting functional modules in the yeast protein-protein interaction network
-
Chen J, Yuan B (2006) Detecting functional modules in the yeast protein-protein interaction network. Bioinformatics (Oxford, England) 22:2283-2290.
-
(2006)
Bioinformatics (Oxford, England)
, vol.22
, pp. 2283-2290
-
-
Chen, J.1
Yuan, B.2
-
40
-
-
67249148362
-
Exploring network structure, dynamics, and function using networkx
-
Varoquaux G, Vaught T, Millman J, editors, Pasadena, CA USA
-
Hagberg A, Schult DA, Swart PJ (2008) Exploring network structure, dynamics, and function using networkx. In: Varoquaux G, Vaught T, Millman J, editors, Proceedings of the 7th Python in Science Conference. Pasadena, CA USA, pp. 11-15.
-
(2008)
Proceedings of the 7th Python in Science Conference
, pp. 11-15
-
-
Hagberg, A.1
Schult, D.A.2
Swart, P.J.3
-
41
-
-
79952392088
-
TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery
-
21408081
-
Chen Y, Tripathi L, Mizuguchi K (2011) TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery. PloS One 6:e17844. doi: 10.1371/journal.pone.0017844 PMID: 21408081
-
(2011)
PloS One
, vol.6
, pp. e17844
-
-
Chen, Y.1
Tripathi, L.2
Mizuguchi, K.3
|