Improved preparation of nasal lavage fluid (NLF) as a noninvasive sample for proteomic biomarker discovery

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1854, Issue 7, 2015, Pages 741-745

  Schoenebeck, Bodo ^a   May, Caroline ^b   Güldner, Christian ^f   Respondek, Gesine ^d,e   Mollenhauer, Brit ^c   Hoeglinger, Guenter ^d,e   Meyer, Helmut E ^g   Marcus, Katrin ^b  

^a RUHR UNIVERSITY BOCHUM   (Germany)

^b RUHR UNIVERSITY BOCHUM   (Germany)

^c PARACELSUS ELENA KLINIK   (Germany)

^d TECHNICAL UNIVERSITY OF MUNICH   (Germany)

^e GERMAN CENTER FOR NEURODEGENERATIVE DISEASES DZNE   (Germany)

^f PHILIPPS UNIVERSITY MARBURG   (Germany)

^g LEIBNIZ INSTITUT FÜR ANALYTISCHE WISSENSCHAFTEN ISAS E V   (Germany)

Author keywords

2D gel electrophoresis; Nasal lavage fluid

Indexed keywords

BIOLOGICAL MARKER;

CHRONIC DISEASE; FEMALE; HUMAN; MALE; METABOLISM; NASAL LAVAGE FLUID; NOSE MUCUS; POLLEN ALLERGY; PROCEDURES; PROTEOMICS; SINUSITIS;

BIOLOGICAL MARKERS; BIOMARKERS; CHRONIC DISEASE; FEMALE; HUMANS; MALE; NASAL LAVAGE FLUID; PROTEOMICS; RHINITIS, ALLERGIC, SEASONAL; SINUSITIS;

EID: 84939995515     PISSN: 15709639     EISSN: 18781454     Source Type: Journal    
DOI: 10.1016/j.bbapap.2015.01.015     Document Type: Article

References (44)

1. J.T. Wilkins, and D.M. Lloyd-Jones Are novel serum biomarkers informative? Med. Clin. N. Am. 96 2012 1 11
2. M.E. Rausch, and K.T. Barnhart Serum biomarkers for detecting ectopic pregnancy Clin. Obstet. Gynecol. 55 2012 418 423
3. N.J.M. Van Beveren, and W.J.G. Hoogendijk Clinical utility of serum biomarkers for major psychiatric disorders Int. Rev. Neurobiol. 101 2011 351 374
4. T. Chan, and F. Gu Early diagnosis of sepsis using serum biomarkers Expert. Rev. Mol. Diagn. 11 2011 487 496
5. A. Boyd, C.T. Yang, K. Estelle, C. Tuggle, L.B. Gerald, M. Dransfield, M. Bamman, J. Bonner, T.P. Atkinson, and L.M. Schwiebert Feasibility of exercising adults with asthma: a randomized pilot study Allergy Asthma Clin. Immunol. 8 2012 13
6. B. Casado, L.K. Pannell, S. Viglio, P. Iadarola, and J.N. Baraniuk Analysis of the sinusitis nasal lavage fluid proteome using capillary liquid chromatography interfaced to electrospray ionization-quadrupole time of flight-tandem mass spectrometry Electrophoresis 25 2004 1386 1393
7. J. Hull, W. Skinner, C. Robertson, and P. Phelan Elemental content of airway surface liquid from infants with cystic fibrosis Am. J. Respir. Crit. Care Med. 157 1998 10 14
8. L.M. Benson, C.J. Mason, O. Friedman, H. Kita, H.R. Bergen, and D.A. Plager NIH Public Access 32 2010 44 56
9. C. Schäper, B. Gustavus, B. Koch, R. Ewert, G. Hanf, G. Kunkel, O. Noga, and S. Gläser Effects of fexofenadine on inflammatory mediators in nasal lavage fluid in intermittent allergic rhinitis J. Investig. Allergol. Clin. Immunol. 19 2009 459 464
10. S. Matsune Allergic rhinitis and vascular endothelial growth factor J. Nippon Med. Sch. Nippon Ika Daigaku Zasshi 79 2012 170 175
11. M. Roponen, J. Kiviranta, M. Seuri, H. Tukiainen, R. Myllykangas-Luosujärvi, and M.R. Hirvonen Inflammatory mediators in nasal lavage, induced sputum and serum of employees with rheumatic and respiratory disorders Eur. Respir. J. Off. J. Eur. Soc. Clin. Res. Phys. 18 2001 542 548
12. C.E.S. Galvão, P.H.N. Saldiva, J.E. Kalil Filho, and F.F.M. Castro Inflammatory mediators in nasal lavage among school-age children from urban and rural areas in São Paulo, Brazil Sao Paulo Med. J. Rev. Paul. Med. 122 2004 204 207
13. M.C. Negrete-Garcia, C.Y. Jimenez-Torres, N. Alvarado-Vasquets, A.R. Montes-Vizuet, J.R. Velazquez-Rodriguez, M.C. Jimenez-Martinez, and L.M. Teran-Juarez Galectin-10 is released in the nasal lavage fluid of patients with aspirin-sensitive respiratory disease TheScientificWorldJOURNAL 2012 2012 474020
14. H. Mörtstedt, M.H. Kåredal, B.A. Jönsson, and C.H. Lindh Screening method using selected reaction monitoring for targeted proteomics studies of nasal lavage fluid J. Proteome Res. 12 2013 234 247
15. J.H. Shin, B.G. Kim, S.W. Kim, J.H. Cho, Y.J. Park, and S.W. Kim Immunomodulatory role of histamine H2 receptor in allergen-specific immunotherapy: a mouse model of allergic rhinitis Otolaryngol. Head Neck Surg. Off. J. Am. Acad. Otolaryngol. Head Neck Surg. 144 2011 500 505
16. B. Ghafouri, K. Irander, J. Lindbom, C. Tagesson, and M. Lindahl Comparative proteomics of nasal fluid in seasonal allergic rhinitis J. Proteome Res. 5 2006 330 338
17. M. Bryborn, M. Adner, and L.O. Cardell Psoriasin, one of several new proteins identified in nasal lavage fluid from allergic and non-allergic individuals using 2-dimensional gel electrophoresis and mass spectrometry Respir. Res. 6 2005 118
18. K. Irander, J.P. Palm, M.P. Borres, and B. Ghafouri Clara cell protein in nasal lavage fluid and nasal nitric oxide-biomarkers with anti-inflammatory properties in allergic rhinitis Clin. Mol. Allergy CMA 10 2012 4
19. A. Sardella, C. Voisin, M. Nickmilder, X. Dumont, I. Annesi-Maesano, and A. Bernard Nasal epithelium integrity, environmental stressors, and allergic sensitization: a biomarker study in adolescents Biomark. Biochem. Indic. Expo. Response Susceptibility Chem. 17 2012 309 318
20. M. Lindahl, B. Ståhlbom, J. Svartz, and C. Tagesson Protein patterns of human nasal and bronchoalveolar lavage fluids analyzed with two-dimensional gel electrophoresis Electrophoresis 19 1998 3222 3229
21. M. Lindahl, B. Ståhlbom, and C. Tagesson Newly identified proteins in human nasal and bronchoalveolar lavage fluids: potential biomedical and clinical applications Electrophoresis 20 1999 3670 3676
22. M. Lindahl, B. Ståhlbom, and C. Tagesson Identification of a new potential airway irritation marker, palate lung nasal epithelial clone protein, in human nasal lavage fluid with two-dimensional electrophoresis and matrix-assisted laser desorption/ionization-time of flight Electrophoresis 22 2001 1795 1800
23. B. Casado, P. Iadarola, and L.K. Pannell Preparation of nasal secretions for proteome analysis Methods Mol. Biol. 425 2008 77 87 (Clifton, N.J.)
24. J. Klose, and U. Kobalz Two-dimensional electrophoresis of proteins: an updated protocol and implications for a functional analysis of the genome Electrophoresis 16 1995 1034 1059
25. K. Stühler, K. Pfeiffer, C. Joppich, C. Stephan, K. Jung, M. Müller, O. Schmidt, A. van Hall, M. Hamacher, W. Urfer, H.E. Meyer, and K. Marcus Pilot study of the Human Proteome Organisation Brain Proteome Project: applying different 2-DE techniques to monitor proteomic changes during murine brain development Proteomics 6 2006 4899 4913
26. K. Marcus, C. Joppich, C. May, K. Pfeiffer, B. Sitek, H. Meyer, and K. Stuehler High-resolution two-dimensional gel electrophoresis (2DE) R. Tyther, D. Sheehan, Two Dimensional Gel Electrophoresis Protocols Methods in Molecular Biology vol. 519 2009 Humana Press Inc./Springer New York 221 240
27. C. May, F. Brosseron, K. Pfeiffer, H.E. Meyer, and K. Marcus Proteome analysis with classical 2D-PAGE K. Marcus, Quantitative Methods in Proteomics Methods in Molecular Biology vol. 893 2012 Humana Press Inc./Springer New York 37 46
28. M.V. Nesterenko, M. Tilley, and S.J. Upton A simple modification of Blum's silver stain method allows for 30 minute detection of proteins in polyacrylamide gels J. Biochem. Biophys. Methods 28 1994 239 242
29. A. Kurz, C. May, O. Schmidt, T. Müller, C. Stephan, H.E. Meyer, S. Gispert, G. Auburger, and K. Marcus A53T-alpha-synuclein-overexpression in the mouse nigrostriatal pathway leads to early increase of 14-3-3 epsilon and late increase of GFAP J. Neural Transm. 119 2012 297 312
30. C. Lindemann, N. Lupilova, A. Müller, B. Warscheid, H.E. Meyer, K. Kuhlmann, M. Eisenacher, and L.I. Leichert Redox proteomics uncovers peroxynitrite-sensitive proteins that help Escherichia coli to overcome nitrosative stress J. Biol. Chem. 288 2013 19698 19714
31. B. Barzaghi, P.G. Righetti, and M. Faupel Isoelectric protein purification in segmented immobilized pH gradients. Effect of salts on rate of contaminants' removal J. Biochem. Biophys. Methods 15 1987 177 187
32. J.N. Baraniuk, M. Ali, A. Yuta, S.Y. Fang, and K. Naranch Hypertonic saline nasal provocation stimulates nociceptive nerves, substance P release, and glandular mucous exocytosis in normal humans Am. J. Respir. Crit. Care Med. 160 1999 655 662
33. B. Casado, L.K. Pannell, P. Iadarola, and J.N. Baraniuk Identification of human nasal mucous proteins using proteomics Proteomics 5 2005 2949 2959
34. M. Lindahl, K. Irander, C. Tagesson, and B. Ståhlbom Nasal lavage fluid and proteomics as means to identify the effects of the irritating epoxy chemical dimethylbenzylamine Biomark. Biochem. Indic. Expo. Response Susceptibility Chem. 9 2004 56 70
35. N.L. Anderson The human plasma proteome: history, character, and diagnostic prospects Mol. Cell. Proteomics 1 2002 845 867
36. M.H. Kåredal, H. Mörtstedt, M.C. Jeppsson, K. Kronholm Diab, J. Nielsen, B.A. Jönsson, and C.H. Lindh Time-dependent proteomic iTRAQ analysis of nasal lavage of hairdressers challenged by persulfate J. Proteome Res. 2010 5620 5628
37. V. Polaskova, A. Kapur, A. Khan, M.P. Molloy, and M.S. Baker High-abundance protein depletion: comparison of methods for human plasma biomarker discovery Electrophoresis 31 2010 471 482
38. B. Ghafouri, B. Ståhlbom, C. Tagesson, and M. Lindahl Newly identified proteins in human nasal lavage fluid from non-smokers and smokers using two-dimensional gel electrophoresis and peptide mass fingerprinting Proteomics 2 2002 112 120
39. C.M. Huang Comparative proteomic analysis of human whole saliva Arch. Oral Biol. 49 2004 951 962
40. K. Lorenz, M. Bader, A. Klaus, W. Weiss, A. Görg, and T. Hofmann Orosensory stimulation effects on human saliva proteome J. Agric. Food Chem. 59 2011 10219 10231
41. R.P. Shiu, and B.M. Iwasiow Prolactin-inducible proteins in human breast cancer cells J. Biol. Chem. 260 1985 11307 11313
42. Y. Myal, D.B. Robinson, B. Iwasiow, D. Tsuyuki, P. Wong, and R.P. Shiu The prolactin-inducible protein (PIP/GCDFP-15) gene: cloning, structure and regulation Mol. Cell. Endocrinol. 80 1991 165 175
43. M. Bläker, K. Kock, C. Ahlers, F. Buck, and H. Schmale Molecular cloning of human von Ebner's gland protein, a member of the lipocalin superfamily highly expressed in lingual salivary glands Biochim. Biophys. Acta 1172 1993 131 137
44. T. Simões, N. Charro, J. Blonder, D. Faria, F.M. Couto, H.J. Isaaq, T.D. Veenstra, and D. Penque Molecular profiling of the human nasal epithelium: a proteomics approach J. Proteome 75 2011 56 69