-
1
-
-
0342615097
-
Mediterranean ecology and an ecological synthesis of the field sites
-
John Wiley and sons, Ltd:
-
Clark SC (1996) Mediterranean ecology and an ecological synthesis of the field sites. In: Brandt CJ, Thornes JB (eds.) Mediterranean desertification and land use. John Wiley and sons, Ltd. pp. 271-301
-
(1996)
Brandt CJ, Thornes JB
, pp. 271-301
-
-
Clark, S.C.1
desertification, M.2
-
2
-
-
33750848244
-
Simulating Mediterranean landscape pattern and vegetation dynamics under different fire regimes
-
Pausas JG (2006) Simulating Mediterranean landscape pattern and vegetation dynamics under different fire regimes. Plant Ecol 187:249–259
-
(2006)
Plant Ecol
, vol.187
, pp. 249-259
-
-
Pausas, J.G.1
-
3
-
-
84877731014
-
-
Ministerio de Medio Ambiente y Medio Rural y Marino, Madrid:
-
Felicísimo ÁM, Muñoz J, Villalba CJ, Mateo RG (2011) Impactos, vulnerabilidad y adaptación al cambio climático de la biodiversidad española. 1. Flora y vegetación. Ministerio de Medio Ambiente y Medio Rural y Marino, Madrid
-
(2011)
Impactos, vulnerabilidad y adaptación al cambio climático de la biodiversidad española. 1. Flora y vegetación
-
-
Felicísimo, Á.M.1
Muñoz, J.2
Villalba, C.J.3
Mateo, R.G.4
-
5
-
-
15244360827
-
Effects of fire on properties of forest soils: a review
-
PID: 15688212
-
Certini G (2005) Effects of fire on properties of forest soils: a review. Oecologia 143:1–10
-
(2005)
Oecologia
, vol.143
, pp. 1-10
-
-
Certini, G.1
-
6
-
-
0036164478
-
Microbial activity and nitrogen mineralization in forest mineral soils following heating: evaluation of post-fire effects
-
COI: 1:CAS:528:DC%2BD38Xhtlyn
-
Choromanska U, DeLuca TH (2002) Microbial activity and nitrogen mineralization in forest mineral soils following heating: evaluation of post-fire effects. Soil Biol Biochem 34:263–271
-
(2002)
Soil Biol Biochem
, vol.34
, pp. 263-271
-
-
Choromanska, U.1
DeLuca, T.H.2
-
8
-
-
84862793403
-
A meta-analysis on the response of microbial biomass, dissolved organic matter, respiration, and N mineralization in mineral soil to fire in forest ecosystems
-
Wang Q, Zhong M, Wang S (2012) A meta-analysis on the response of microbial biomass, dissolved organic matter, respiration, and N mineralization in mineral soil to fire in forest ecosystems. For Ecol Manag 271:91–97
-
(2012)
For Ecol Manag
, vol.271
, pp. 91-97
-
-
Wang, Q.1
Zhong, M.2
Wang, S.3
-
9
-
-
79952575197
-
Soil microbial recolonisation after a fire in a Mediterranean forest
-
Bárcenas-Moreno G, García-Orenes F, Mataix-Solera J, Mataix-Beneyto J, Bååth E (2011) Soil microbial recolonisation after a fire in a Mediterranean forest. Biol Fertil Soils 47:261–272
-
(2011)
Biol Fertil Soils
, vol.47
, pp. 261-272
-
-
Bárcenas-Moreno, G.1
García-Orenes, F.2
Mataix-Solera, J.3
Mataix-Beneyto, J.4
Bååth, E.5
-
10
-
-
37849036782
-
Effects of wildfire and harvest disturbances on forest soil bacterial communities
-
COI: 1:CAS:528:DC%2BD1cXnsVGrsQ%3D%3D, PID: 18024684
-
Smith NR, Kishchuk BE, Mohn WW (2008) Effects of wildfire and harvest disturbances on forest soil bacterial communities. Appl Environ Microbiol 74:216–224
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 216-224
-
-
Smith, N.R.1
Kishchuk, B.E.2
Mohn, W.W.3
-
11
-
-
18444404637
-
Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire
-
COI: 1:CAS:528:DC%2BD2MXktFKlsro%3D, PID: 15870363
-
Yeager CM, Northup DE, Grow CC, Barns SM, Kuske CR (2005) Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire. Appl Environ Microbiol 71:2713–2722
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 2713-2722
-
-
Yeager, C.M.1
Northup, D.E.2
Grow, C.C.3
Barns, S.M.4
Kuske, C.R.5
-
12
-
-
0036825760
-
Ecological restoration of Southwestern ponderosa pine ecosystems: a broad perspective
-
Allen CD, Savage M, Falk DA, Suckling KF, Swetnam TW, Schulke T, Stacey PM, Hoffman M, Klingelm JT (2002) Ecological restoration of Southwestern ponderosa pine ecosystems: a broad perspective. Ecol Appl 12:1418–1433
-
(2002)
Ecol Appl
, vol.12
, pp. 1418-1433
-
-
Allen, C.D.1
Savage, M.2
Falk, D.A.3
Suckling, K.F.4
Swetnam, T.W.5
Schulke, T.6
Stacey, P.M.7
Hoffman, M.8
Klingelm, J.T.9
-
13
-
-
0035155176
-
The long-term effects of land-use history on nitrogen cycling in northern hardwood forests
-
Goodale CL, Aber JD (2001) The long-term effects of land-use history on nitrogen cycling in northern hardwood forests. Ecol Appl 11:253–267
-
(2001)
Ecol Appl
, vol.11
, pp. 253-267
-
-
Goodale, C.L.1
Aber, J.D.2
-
14
-
-
0038234799
-
Nitrogenase gene diversity and microbial community structure: a cross-system comparison
-
COI: 1:CAS:528:DC%2BD3sXlvFChs7s%3D, PID: 12823187
-
Zehr JP, Jenkins BD, Short SM, Steward GF (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5:539–554
-
(2003)
Environ Microbiol
, vol.5
, pp. 539-554
-
-
Zehr, J.P.1
Jenkins, B.D.2
Short, S.M.3
Steward, G.F.4
-
15
-
-
77954959183
-
Impact of wildfire intensity and logging on fungal and nitrogen-cycling bacterial communities in British Columbia forest soils
-
Kennedy N, Egger KN (2010) Impact of wildfire intensity and logging on fungal and nitrogen-cycling bacterial communities in British Columbia forest soils. For Ecol Manag 260:787–794
-
(2010)
For Ecol Manag
, vol.260
, pp. 787-794
-
-
Kennedy, N.1
Egger, K.N.2
-
16
-
-
27744511084
-
Quantitative analyses of nitrogen cycling genes in soils
-
COI: 1:CAS:528:DC%2BD28XhsFehsbo%3D
-
Wallenstein MD, Vilgalys RJ (2005) Quantitative analyses of nitrogen cycling genes in soils. Pedobiologia 49:665–672
-
(2005)
Pedobiologia
, vol.49
, pp. 665-672
-
-
Wallenstein, M.D.1
Vilgalys, R.J.2
-
17
-
-
84862665622
-
The microbiome of Brazilian mangrove sediments as revealed by metagenomics
-
COI: 1:CAS:528:DC%2BC38XpsVWls7s%3D, PID: 22737213
-
Andreote FD, Jiménez DJ, Chaves D, Dias ACF, Luvizotto DM, Dini-Andreote F, Fasanella CC, Lopez MV, Baena S, Taketani RG, de Melo IS (2012) The microbiome of Brazilian mangrove sediments as revealed by metagenomics. PLoS ONE 7(6):e38600
-
(2012)
PLoS ONE
, vol.7
, Issue.6
, pp. e38600
-
-
Andreote, F.D.1
Jiménez, D.J.2
Chaves, D.3
Dias, A.C.F.4
Luvizotto, D.M.5
Dini-Andreote, F.6
Fasanella, C.C.7
Lopez, M.V.8
Baena, S.9
Taketani, R.G.10
de Melo, I.S.11
-
18
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
COI: 1:CAS:528:DC%2BD2MXjtlOjt7c%3D, PID: 15845853
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM (2005) Comparative metagenomics of microbial communities. Science 308:554–557
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
19
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
COI: 1:CAS:528:DC%2BD2cXhslCns70%3D, PID: 14961025
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428:37–43
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
Richardson, P.M.6
Solovyev, V.V.7
Rubin, E.M.8
Rokhsar, D.S.9
Banfield, J.F.10
-
20
-
-
70350294348
-
Systematic artifacts in metagenomes from complex microbial communities
-
PID: 19587772
-
Gomez-Alvarez V, Teal TK, Schmidt TM (2009) Systematic artifacts in metagenomes from complex microbial communities. ISME J 3:1314–1317
-
(2009)
ISME J
, vol.3
, pp. 1314-1317
-
-
Gomez-Alvarez, V.1
Teal, T.K.2
Schmidt, T.M.3
-
21
-
-
77949513645
-
SeqTrim: a high-throughput pipeline for preprocessing any type of sequence read
-
Falgueras J, Lara AJ, Fernández-Pozo N, Cantón FR, Pérez-Trabado G, Claros MG (2010) SeqTrim: a high-throughput pipeline for preprocessing any type of sequence read. BMC Bioinforma 11:38
-
(2010)
BMC Bioinforma
, vol.11
, pp. 38
-
-
Falgueras, J.1
Lara, A.J.2
Fernández-Pozo, N.3
Cantón, F.R.4
Pérez-Trabado, G.5
Claros, M.G.6
-
22
-
-
53549118607
-
The metagenomics RAST server—a public resource for the automatic phylogenetic and functional analysis of metagenomes
-
COI: 1:CAS:528:DC%2BD1cXhtlGjsrbM
-
Meyer F, Paarmann D, D'Souza M, Olson R, Glass EM, Kubal M, Paczian T, Rodriguez A, Stevens R, Wilke A, Wilkening J, Edwards RA (2008) The metagenomics RAST server—a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinforma 9:386
-
(2008)
BMC Bioinforma
, vol.9
, pp. 386
-
-
Meyer, F.1
Paarmann, D.2
D'Souza, M.3
Olson, R.4
Glass, E.M.5
Kubal, M.6
Paczian, T.7
Rodriguez, A.8
Stevens, R.9
Wilke, A.10
Wilkening, J.11
Edwards, R.A.12
-
23
-
-
77951945504
-
Identifying biologically relevant differences between metagenomic communities
-
COI: 1:CAS:528:DC%2BC3cXivFGrsrs%3D, PID: 20130030
-
Parks DH, Beiko RG (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26:715–721
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
24
-
-
66249145772
-
Statistical methods for detecting differentially abundant features in clinical metagenomic samples
-
PID: 19360128
-
White JR, Nagarajan N, Pop M (2009) Statistical methods for detecting differentially abundant features in clinical metagenomic samples. PLoS Comput Biol 5:e1000352. doi:10.1371/journal.pcbi.1000352
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000352
-
-
White, J.R.1
Nagarajan, N.2
Pop, M.3
-
25
-
-
0033083698
-
Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon Cascade Mountain Range
-
COI: 1:CAS:528:DyaK1MXpvFCntA%3D%3D, PID: 9925556
-
Widmer F, Shaffer BT, Porteus LA, Seidler RJ (1999) Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon Cascade Mountain Range. Appl Environ Microbiol 65:374–380
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 374-380
-
-
Widmer, F.1
Shaffer, B.T.2
Porteus, L.A.3
Seidler, R.J.4
-
26
-
-
33847304638
-
Rhizosphere-bacterial community in Eperua falcata (Caesalpiniaceae) a putative nitrogen-fixing tree from French Guiana rainforest
-
COI: 1:CAS:528:DC%2BD2sXhslCltLc%3D, PID: 17186143
-
Villadas PJ, Fernández-López M, Ramírez-Saad H, Toro N (2007) Rhizosphere-bacterial community in Eperua falcata (Caesalpiniaceae) a putative nitrogen-fixing tree from French Guiana rainforest. Microb Ecol 53:317–327
-
(2007)
Microb Ecol
, vol.53
, pp. 317-327
-
-
Villadas, P.J.1
Fernández-López, M.2
Ramírez-Saad, H.3
Toro, N.4
-
27
-
-
84875619226
-
MAFFT Multiple sequence alignment software version 7: improvements in performance and usability
-
COI: 1:CAS:528:DC%2BC3sXksFWisLc%3D, PID: 23329690
-
Katoh K, Standley DM (2013) MAFFT Multiple sequence alignment software version 7: improvements in performance and usability. Mol Biol Evol 30:772–780
-
(2013)
Mol Biol Evol
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
28
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
COI: 1:CAS:528:DC%2BC3cXis1yltw%3D%3D, PID: 19801464
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF (2009) Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537–7541
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
29
-
-
4644275463
-
Integration of microbial ecology and statistics: a test to compare gene libraries
-
COI: 1:CAS:528:DC%2BD2cXnslWjs7w%3D, PID: 15345436
-
Schloss PD, Larget BR, Handelsman J (2004) Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70:5485–5492
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 5485-5492
-
-
Schloss, P.D.1
Larget, B.R.2
Handelsman, J.3
-
30
-
-
43349091113
-
GINKGO, a program for non-standard multivariate fuzzy analysis
-
De Cáceres M, Font X, Oliva F, Vives S (2007) GINKGO, a program for non-standard multivariate fuzzy analysis. Adv Fuzzy Sets Syst 2:41–56
-
(2007)
Adv Fuzzy Sets Syst
, vol.2
, pp. 41-56
-
-
De Cáceres, M.1
Font, X.2
Oliva, F.3
Vives, S.4
-
31
-
-
84874683250
-
Effect of decomposing post-fire coarse woody debris on soil fertility and nutrient availability in a Mediterranean ecosystem
-
Marañón-Jiménez S, Castro J (2013) Effect of decomposing post-fire coarse woody debris on soil fertility and nutrient availability in a Mediterranean ecosystem. Biogeochemistry 112:519–535
-
(2013)
Biogeochemistry
, vol.112
, pp. 519-535
-
-
Marañón-Jiménez, S.1
Castro, J.2
-
32
-
-
82055165911
-
Frequency of prescribed burning in an upland oak forest determines soil and litter properties and alters the soil microbial community
-
Williams RJ, Hallgren SW, Wilson GWT (2012) Frequency of prescribed burning in an upland oak forest determines soil and litter properties and alters the soil microbial community. For Ecol Manag 265:241–247
-
(2012)
For Ecol Manag
, vol.265
, pp. 241-247
-
-
Williams, R.J.1
Hallgren, S.W.2
Wilson, G.W.T.3
-
33
-
-
38649113598
-
Soil scarification and wildfire interactions and effects on microbial communities and carbon
-
Jiménez-Esquilín AE, Stromberger ME, Shepperd WD (2008) Soil scarification and wildfire interactions and effects on microbial communities and carbon. Soil Sci Soc Am J 72:111–118
-
(2008)
Soil Sci Soc Am J
, vol.72
, pp. 111-118
-
-
Jiménez-Esquilín, A.E.1
Stromberger, M.E.2
Shepperd, W.D.3
-
34
-
-
0034860275
-
Effects of nitrogen enrichment, wildfire, and harvesting on forest-soil carbon and nitrogen
-
COI: 1:CAS:528:DC%2BD3MXntFequrc%3D
-
Parker JL, Fernández IJ, Rustad LE, Norton SA (2001) Effects of nitrogen enrichment, wildfire, and harvesting on forest-soil carbon and nitrogen. Soil Sci Soc Am J 65:1248–1255
-
(2001)
Soil Sci Soc Am J
, vol.65
, pp. 1248-1255
-
-
Parker, J.L.1
Fernández, I.J.2
Rustad, L.E.3
Norton, S.A.4
-
35
-
-
84860517669
-
Changes in soil chemical and biological properties after thinning and prescribed fire for ecosystem restoration in a Rocky Mountain Douglas-fir forest
-
Switzer JM, Hope GD, Grayston SJ, Prescott CE (2012) Changes in soil chemical and biological properties after thinning and prescribed fire for ecosystem restoration in a Rocky Mountain Douglas-fir forest. For Ecol Manag 275:1–13
-
(2012)
For Ecol Manag
, vol.275
, pp. 1-13
-
-
Switzer, J.M.1
Hope, G.D.2
Grayston, S.J.3
Prescott, C.E.4
-
36
-
-
14644387541
-
Nitric oxide and nitrosative stress tolerance in bacteria
-
COI: 1:CAS:528:DC%2BD2MXovFyiug%3D%3D, PID: 15667299
-
Poole RK (2005) Nitric oxide and nitrosative stress tolerance in bacteria. Biochem Soc Trans 33:176–180
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 176-180
-
-
Poole, R.K.1
-
37
-
-
84862500464
-
Burning fire-prone Mediterranean shrublands: immediate changes in soil microbial community structure and ecosystem functions
-
COI: 1:STN:280:DC%2BC38zpsVartQ%3D%3D, PID: 22202889
-
Goberna M, García C, Insam H, Hernández MT, Verdú M (2012) Burning fire-prone Mediterranean shrublands: immediate changes in soil microbial community structure and ecosystem functions. Microb Ecol 64:242–255
-
(2012)
Microb Ecol
, vol.64
, pp. 242-255
-
-
Goberna, M.1
García, C.2
Insam, H.3
Hernández, M.T.4
Verdú, M.5
-
38
-
-
77953711692
-
Allantoin-induced changes of microbial diversity and community in rice soil
-
COI: 1:CAS:528:DC%2BC3cXntlGhurc%3D
-
Wang P, Kong C, Sun B, Xu X (2010) Allantoin-induced changes of microbial diversity and community in rice soil. Plant Soil 332:357–368
-
(2010)
Plant Soil
, vol.332
, pp. 357-368
-
-
Wang, P.1
Kong, C.2
Sun, B.3
Xu, X.4
-
39
-
-
0034093663
-
Temporal and spatial distribution of the nifH gene of N2 fixing bacteria in forests and clear cuts in western Oregon
-
COI: 1:CAS:528:DC%2BD3cXjsFehsr8%3D, PID: 10790513
-
Shaffer BT, Widmer F, Porteous LA, Seidler RJ (2000) Temporal and spatial distribution of the nifH gene of N2 fixing bacteria in forests and clear cuts in western Oregon. Microb Ecol 39:12–21
-
(2000)
Microb Ecol
, vol.39
, pp. 12-21
-
-
Shaffer, B.T.1
Widmer, F.2
Porteous, L.A.3
Seidler, R.J.4
-
40
-
-
1542719903
-
The natural history of nitrogen fixation
-
COI: 1:CAS:528:DC%2BD2cXis1entLk%3D, PID: 14694078
-
Raymond J, Siefert JL, Staples CR, Blankenship RE (2004) The natural history of nitrogen fixation. Mol Biol Evol 21(3):541–554
-
(2004)
Mol Biol Evol
, vol.21
, Issue.3
, pp. 541-554
-
-
Raymond, J.1
Siefert, J.L.2
Staples, C.R.3
Blankenship, R.E.4
-
42
-
-
78650680132
-
Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments
-
COI: 1:CAS:528:DC%2BC3MXhtlGmtA%3D%3D
-
Khodadad CLM, Zimmerman AR, Green SJ, Uthandi S, Foster JS (2011) Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments. Soil Biol Biochem 43:385–392
-
(2011)
Soil Biol Biochem
, vol.43
, pp. 385-392
-
-
Khodadad, C.L.M.1
Zimmerman, A.R.2
Green, S.J.3
Uthandi, S.4
Foster, J.S.5
-
43
-
-
0034519183
-
Arthrobacter chlorophenolicus sp. nov., a new species capable of degrading high concentrations of 4-chlorophenol
-
COI: 1:CAS:528:DC%2BD3MXls1GgtQ%3D%3D, PID: 11155983
-
Westerberg K, Elvang AM, Stackebrandt E, Jansson JK (2000) Arthrobacter chlorophenolicus sp. nov., a new species capable of degrading high concentrations of 4-chlorophenol. Int J Syst Evol Microbiol 50:2083–2092
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 2083-2092
-
-
Westerberg, K.1
Elvang, A.M.2
Stackebrandt, E.3
Jansson, J.K.4
-
44
-
-
70349551727
-
Plant-growth-promoting rhizobacteria
-
COI: 1:CAS:528:DC%2BD1MXhtlSitLnN, PID: 19575558
-
Lugtenberg B, Kamilova F (2009) Plant-growth-promoting rhizobacteria. Annu Rev Microbiol 63:541–556
-
(2009)
Annu Rev Microbiol
, vol.63
, pp. 541-556
-
-
Lugtenberg, B.1
Kamilova, F.2
|