-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, SF, Madden, TL, Schäffer, AA, Jinghui, Z, Zheng, Z, Miller, W, Lipman, DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Jinghui, Z.4
Zheng, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0030860238
-
Molecular microbial diversity in soils from Eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
-
Borneman, J, Triplett, EW (1997) Molecular microbial diversity in soils from Eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63: 2647-2653
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2647-2653
-
-
Borneman, J.1
Triplett, E.W.2
-
3
-
-
0024190163
-
-
Repetto R, Gillis M (eds) Public Policies and the Misuse of Forest Resources. Cambridge Press. London, UK, pp
-
Browder, JO (1988) Public policy and deforestation in the Brazilian Amazon. In: Repetto R, Gillis M (eds) Public Policies and the Misuse of Forest Resources. Cambridge Press. London, UK, pp 247-297
-
(1988)
Public policy and deforestation in the Brazilian Amazon
, pp. 247-297
-
-
Browder, J.O.1
-
4
-
-
0345869640
-
New molecular screening tools for analysis of free-living diazotrophs in soil
-
Bürgmann, H, Widmer, F, Von Sigler, W, Zeyer, J (2004) New molecular screening tools for analysis of free-living diazotrophs in soil. Appl Environ Microbiol 70: 240-247
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 240-247
-
-
Bürgmann, H.1
Widmer, F.2
Von Sigler, W.3
Zeyer, J.4
-
5
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): Sequences and tools for high-throughput rRNA analysis
-
Database Issue
-
Cole, JR, Chai, B, Farris, RJ, Wang, Q, Kulam, SA, McGarrell, DM, Garrity, GM, Tiedje, JM (2005) The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 33: D294-D296 (Database Issue)
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
6
-
-
0035125750
-
Estimation of biomass in a neotropical forest of French Guiana: Spatial and temporal variability
-
Chave, J, Riéra, B, Dubois, MA (2001) Estimation of biomass in a neotropical forest of French Guiana: spatial and temporal variability. J Trop Ecol 17: 79-96
-
(2001)
J Trop Ecol
, vol.17
, pp. 79-96
-
-
Chave, J.1
Riéra, B.2
Dubois, M.A.3
-
7
-
-
33847310247
-
2) and associated genes in the archeon Methanosarcina barkeri 227
-
2) and associated genes in the archeon Methanosarcina barkeri 227. J Bacteriol 182: 3247-3253
-
(1996)
J Bacteriol
, vol.182
, pp. 3247-3253
-
-
Chien, Y.B.1
Zinder, S.H.2
-
8
-
-
12144286064
-
2-fixing bacterial diversity in soil under Acacia tortilis ssp. raddiana and Balanites aegyptiaca in the dryland part of Senegal
-
2-fixing bacterial diversity in soil under Acacia tortilis ssp. raddiana and Balanites aegyptiaca in the dryland part of Senegal. Environ Microbiol 6: 400-415
-
(2004)
Environ Microbiol
, vol.6
, pp. 400-415
-
-
Diallo, M.D.1
Willems, A.2
Vloemans, N.3
Cousin, S.4
Vandekerckhove, T.T.5
de Lajudie, P.6
Neyra, M.7
Vyverman, W.8
Gillis, M.9
Van der Gucht, K.10
-
9
-
-
15944400354
-
Occurrence of nodulation in unexplored leguminous trees native to the West African tropical rainforest and inoculation response of native species useful in reforestation
-
Diabate, M, Munive, A, Miana, de Faria, S, Ba, A, Dreyfus, B, Galiana, A (2005) Occurrence of nodulation in unexplored leguminous trees native to the West African tropical rainforest and inoculation response of native species useful in reforestation. New Phytol 166: 231-239
-
(2005)
New Phytol
, vol.166
, pp. 231-239
-
-
Diabate, M.1
Munive, A.2
Miana3
de Faria, S.4
Ba, A.5
Dreyfus, B.6
Galiana, A.7
-
10
-
-
33847291280
-
-
Felsenstein, J (1995) PHYLIP (Phylogeny Inference Package) version 3.55c, Department of Genetics, University of Washington, Seattle, WA, distributed by the author
-
Felsenstein, J (1995) PHYLIP (Phylogeny Inference Package) version 3.55c, Department of Genetics, University of Washington, Seattle, WA, distributed by the author. http://evolution.genetics.washington.edu/phylip/getme.html
-
-
-
-
12
-
-
0031982528
-
Microbial evolution, diversity, and ecology: A decade of ribosomal RNA analysis of uncultivated microorganisms
-
Head, IM, Saunders, JR, Pickup, RW (1998) Microbial evolution, diversity, and ecology: a decade of ribosomal RNA analysis of uncultivated microorganisms. Microb Ecol 35: 1-21
-
(1998)
Microb Ecol
, vol.35
, pp. 1-21
-
-
Head, I.M.1
Saunders, J.R.2
Pickup, R.W.3
-
13
-
-
15944410314
-
Nickel mine spoils revegetation attempts: Effect of pioneer plants on two functional bacterial communities involved in the N-cycle
-
Hery, M, Philippot, L, Meriaux, E, Poly, F, Le Roux, X, Navarro, E (2005) Nickel mine spoils revegetation attempts: effect of pioneer plants on two functional bacterial communities involved in the N-cycle. Environ Microbiol 7: 486-498
-
(2005)
Environ Microbiol
, vol.7
, pp. 486-498
-
-
Hery, M.1
Philippot, L.2
Meriaux, E.3
Poly, F.4
Le Roux, X.5
Navarro, E.6
-
15
-
-
0036405388
-
Microbial communities and their interactions in soil and rhizosphere ecosystems
-
Kent, AD, Triplett, EW (2002) Microbial communities and their interactions in soil and rhizosphere ecosystems. Annu Rev Microbiol 56: 211-236
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 211-236
-
-
Kent, A.D.1
Triplett, E.W.2
-
16
-
-
3242731518
-
Methods of studying soil microbial diversity
-
Kirk, JL, Beaudette, LA, Hart, M, Moutoglis, P, Klironomos, JN, Lee, H, Trevors, JT (2004) Methods of studying soil microbial diversity. J Microbiol Methods 58: 169-188
-
(2004)
J Microbiol Methods
, vol.58
, pp. 169-188
-
-
Kirk, J.L.1
Beaudette, L.A.2
Hart, M.3
Moutoglis, P.4
Klironomos, J.N.5
Lee, H.6
Trevors, J.T.7
-
17
-
-
0242411912
-
Nodulation and dinitrogen fixation of legumes trees in a tropical freshwater swamp forest in French Guiana
-
Koponen, P, Nygren, P, Domenach, AM, Le Roux, C, Saur, E, Roggy, JC (2003) Nodulation and dinitrogen fixation of legumes trees in a tropical freshwater swamp forest in French Guiana. J Trop Ecol 19: 655-666
-
(2003)
J Trop Ecol
, vol.19
, pp. 655-666
-
-
Koponen, P.1
Nygren, P.2
Domenach, A.M.3
Le Roux, C.4
Saur, E.5
Roggy, J.C.6
-
18
-
-
0035910562
-
The future of the Brazilian Amazon
-
Laurance, WF, Cochrane, MA, Bergen, S, Fearnside, PM, Delamônica, P, Barber, C, D'Angelo, S, Fernandes T (2001) The future of the Brazilian Amazon. Science 291: 438-439
-
(2001)
Science
, vol.291
, pp. 438-439
-
-
Laurance, W.F.1
Cochrane, M.A.2
Bergen, S.3
Fearnside, P.M.4
Delamônica, P.5
Barber, C.6
D'Angelo, S.7
Fernandes, T.8
-
19
-
-
0035152538
-
Arbuscular mycorhizas in Dicorynia guianensis and Eperua falcata trees from primary tropical rain forest of French Guiana
-
Martin, J, Bereau, M, Louisanna, E, Ocampo, JA (2001) Arbuscular mycorhizas in Dicorynia guianensis and Eperua falcata trees from primary tropical rain forest of French Guiana. Symbiosis 31: 283-291
-
(2001)
Symbiosis
, vol.31
, pp. 283-291
-
-
Martin, J.1
Bereau, M.2
Louisanna, E.3
Ocampo, J.A.4
-
20
-
-
0035940939
-
Tree diversity in tropical rain forest: A validation of the intermediate disturbance hypothesis
-
Molino, JF, Sabatier, D (2001) Tree diversity in tropical rain forest: a validation of the intermediate disturbance hypothesis. Science 294: 1702-1704
-
(2001)
Science
, vol.294
, pp. 1702-1704
-
-
Molino, J.F.1
Sabatier, D.2
-
21
-
-
0033152336
-
DGGE/TGGE a method for identifying genes from natural ecosystems
-
Muyzer, G (1999) DGGE/TGGE a method for identifying genes from natural ecosystems. Curr Opin Microbiol 2: 317-322
-
(1999)
Curr Opin Microbiol
, vol.2
, pp. 317-322
-
-
Muyzer, G.1
-
22
-
-
17644436677
-
Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil
-
Nüsslein, K, Tiedje, JM (1999) Soil bacterial community shift correlated with change from forest to pasture vegetation in a tropical soil. Appl Environ Microbiol 65: 3622-3626
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 3622-3626
-
-
Nüsslein, K.1
Tiedje, J.M.2
-
23
-
-
0030203863
-
TREEVIEW: An application to display phylogenetic trees on personal computers
-
Page, RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comp Appl Biosci 12: 357-358
-
(1996)
Comp Appl Biosci
, vol.12
, pp. 357-358
-
-
Page, R.D.M.1
-
24
-
-
0030741056
-
An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications
-
Porteous, LA, Seidler, RJ, Watrud, LS (1997) An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications. Mol Ecol 6: 787-791
-
(1997)
Mol Ecol
, vol.6
, pp. 787-791
-
-
Porteous, L.A.1
Seidler, R.J.2
Watrud, L.S.3
-
25
-
-
0000947436
-
Differences between direct and indirect enumeration of soil bacteria: The influence of soil structure and cell location
-
Richaume, A, Steinberg, C, Jocteur-Monrozier, L, Faurie, G (1993) Differences between direct and indirect enumeration of soil bacteria: the influence of soil structure and cell location. Soil Biol Biochem 25: 641-643
-
(1993)
Soil Biol Biochem
, vol.25
, pp. 641-643
-
-
Richaume, A.1
Steinberg, C.2
Jocteur-Monrozier, L.3
Faurie, G.4
-
26
-
-
0344991691
-
Nitrogen-fixing legumes and silvigenesis in a rain forest in French Guiana: A taxonomic and ecological approach
-
Roggy, JC, Prevost, MF (1999) Nitrogen-fixing legumes and silvigenesis in a rain forest in French Guiana: a taxonomic and ecological approach. New Phytol 144: 283-294
-
(1999)
New Phytol
, vol.144
, pp. 283-294
-
-
Roggy, J.C.1
Prevost, M.F.2
-
28
-
-
0344289529
-
15N abundance and total N concentration as potential indicators of plant N nutrition in legumes and pioneer species in a rain forest of French Guiana
-
15N abundance and total N concentration as potential indicators of plant N nutrition in legumes and pioneer species in a rain forest of French Guiana. Oecologia 120: 171-182
-
(1999)
Oecologia
, vol.120
, pp. 171-182
-
-
Roggy, J.C.1
Prevost, M.F.2
Gourbiere, F.3
Casabianca, H.4
Garbaye, J.5
Domenach, A.M.6
-
29
-
-
0004136246
-
-
3rd edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J, Russell, DW (2001) Molecular Cloning: A Laboratory Manual, 3rd edition, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
(2001)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Russell, D.W.2
-
30
-
-
0031764376
-
A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
-
Schwieger, F, Tebbe, CC (1998) A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64: 4870-4876
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 4870-4876
-
-
Schwieger, F.1
Tebbe, C.C.2
-
32
-
-
0025215665
-
High diversity in DNA of soil bacteria
-
Torsvik, V, Goksoyr, J, Daae, FL (1990) High diversity in DNA of soil bacteria. Appl Environ Microbiol 56: 782-787
-
(1990)
Appl Environ Microbiol
, vol.56
, pp. 782-787
-
-
Torsvik, V.1
Goksoyr, J.2
Daae, F.L.3
-
33
-
-
33847276554
-
-
Ed, Environmental Molecular Microbiology: Protocols and Applications. Horizon Scientific Press, Wymondham, UK, pp
-
Tsai, YL, Rochelle, PA (2001) Extraction of nucleic acids from environmental samples. In: Rochelle, PA (Ed.) Environmental Molecular Microbiology: Protocols and Applications. Horizon Scientific Press, Wymondham, UK, pp 15-30
-
(2001)
Extraction of nucleic acids from environmental samples
, pp. 15-30
-
-
Tsai, Y.L.1
Rochelle, P.A.2
-
34
-
-
0029161178
-
A new fluorescence staining assay for visualizing living microorganisms in soil
-
Tsuji, T, Kawasaki, Y, Takeshima, S, Sekiya, T, Tanaka, S (1995) A new fluorescence staining assay for visualizing living microorganisms in soil. Appl Environ Microbiol 61: 3415-3421
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 3415-3421
-
-
Tsuji, T.1
Kawasaki, Y.2
Takeshima, S.3
Sekiya, T.4
Tanaka, S.5
-
35
-
-
0036731750
-
Effect of Sinorhizobium meliloti strain with a modified putA gene on the rhizosphere community of alfalfa
-
van Dillewijn, P, Villadas, PJ, Toro, N (2002) Effect of Sinorhizobium meliloti strain with a modified putA gene on the rhizosphere community of alfalfa. Appl Environ Microbiol 68: 4201-4208
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4201-4208
-
-
van Dillewijn, P.1
Villadas, P.J.2
Toro, N.3
-
36
-
-
0033083698
-
Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range
-
Widmer, F, Shaffer, BT, Porteous, LA, Seidler, RJ (1999) Analysis of nifH gene pool complexity in soil and litter at a Douglas fir forest site in the Oregon cascade mountain range. Appl Environ Microbiol 65: 374-380
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 374-380
-
-
Widmer, F.1
Shaffer, B.T.2
Porteous, L.A.3
Seidler, R.J.4
-
37
-
-
0038234799
-
Nitrogenase gene diversity and microbial community structure: A cross-system comparison
-
Zehr, JP, Jenkins, BD, Short, SM, Steward, GF (2003) Nitrogenase gene diversity and microbial community structure: a cross-system comparison. Environ Microbiol 5: 539-554
-
(2003)
Environ Microbiol
, vol.5
, pp. 539-554
-
-
Zehr, J.P.1
Jenkins, B.D.2
Short, S.M.3
Steward, G.F.4
|