Marker assisted backcross breeding approach to improve blast resistance in Indian rice (Oryza sativa) variety ADT43

Euphytica

Volumn 200, Issue 1, 2014, Pages 61-77

  Divya, Balakrishnan ^a,b   Robin, S ^a   Rabindran, R ^a   Senthil, S ^a   Raveendran, M ^a   Joel, A John ^a  

^a TAMIL NADU AGRICULTURAL UNIVERSITY   (India)

^b DIRECTORATE OF RICE RESEARCH   (India)

Author keywords

Backcross breeding; Blast resistance; Gene pyramiding; MAS; Rice

Indexed keywords

EID: 84939889600     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-014-1146-9     Document Type: Article

References (67)

1. Alvarez A, Fuentes JL, Puldon V (2007) Genetic diversity analysis of Cuban traditional rice (Oryza sativa L.) varieties based on microsatellite markers. Genet Mol Biol 30:1109–1117
2. Barman SR, Chattoo BB (2005) Rice blast fungus sequenced. Curr Sci 89(6):930–931
3. Barr ME (1977) Magnaporthe, telimenella and hyponectria (Physosphorellaceae). Mycologia 69:952–956
4. Basavaraj SH, Singh VK, Singh A, Singh A, Singh A, Yadav S, Ellur RK, Singh D, Gopalakrishnan S, Nagarajan M, Mohapatra T, Prabhu KV, Singh AK (2010) Marker-assisted improvement of bacterial blight resistance in parental lines of Pusa RH10, a superfine grain aromatic rice hybrid. Mol Breed 26:293–305
5. Benbouza H, Jacquemin JM, Baudoin JP, Mergeai G (2006) Optimization of a reliable, fast, cheap and sensitive silver staining method to detect SSR markers in polyacrylamide gels. Biotechnol Agron Soc Env 10:77–81
6. Bustamam M, Agisimanto D, Lubis E, Suwarno R (2005) Application of molecular marker for the assessment of blast resistance genes, Pi1 and Pi2, incorporated into Indonesian rice cultivars. J Biotechnol Pertaninan 10(2):51–54
7. Chen X, Temnykh S, Xu Y, Cho YG, McCouch SR (1997) Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet 95:553–567
8. Chen XW, Li SG, Xu JC (2004) Identification of two blast resistance genes in a rice variety. Digu J Phytopathol 152:77–85
9. Conaway-Bormans CA, Marchetti MA, Johnson CW, McClung AM, Park WD (2003) Molecular markers linked to the blast resistance gene Piz in rice for use in markerassisted selection. Theor Appl Genet 107:1014–1020
10. Correa-Victoria FJ, Tharreau D, Martinez C, Vales M, Escobar F, Prado G, Aricada G (2002) Gene combinations for durable rice blast (Pyricularia grisea) resistance in Colombia. Fitopatol Colomb 26:47–54
11. Dai L, Wu J, Li X, Wang X, Liu X, Jantasuriyarat C, Kudrna D, Yu Y, Wing RA, Han B, Zhou B, Wang GL (2010) Genomic structure and evolution of the Pi2/9 locus in wild rice species. Theor Appl Genet 121:295–309
12. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissue. Phytochem Bull 19:11–15
13. Eizenga GC, Agrama HA, Lee FN, Yan W, Jia Y (2006) Identifying novel resistance genes in newly introduced blast resistant rice germplasm. Crop Sci 46:1870–1878
14. FAOSTAT (2013) Statistical database of the food and agriculture of the united nations. FAO, Rome
15. Fjellstrom R, McClung A, Gibbons J, Deren C (2004) Development of DNA markers suitable for marker assisted selection of three Pi genes conferring resistance to multiple pyricularia grisea pathotypes. Crop Sci 44:1790–1798
16. Fuentes JL, Correa-Victoria FJ, Escobar F, Prado G, Aricapa G, Duque MC, Thome J (2008) Identification of microsatellite markers linked to the blast resistance gene Pi-1(t) in rice. Euphytica 160:295–304
17. Fujita D, Yoshimura A, Yasui H (2010) Development of near-isogenic lines and pyramided lines carrying resistance genes to green rice leafhopper (Nephotettix cincticeps Uhler) with the Taichung 65 genetic background in rice (Oryza sativa L.) Breed. Science 60:18–27
18. Fukuta Y, Tamura K, Hirae M, Oya S (1998) Genetic analysis of resistance to green rice leafhopper (Nephotettix cincticeps Uhler) in rice parental line, Norin-PL6, using RFLP markers. Breed Sci 48:243–249
19. Gopalakrishnan S, Sharma RK, Rajkumar KA, Joseph M, Singh VP, Singh AK, Bhat KV, Singh NK, Mohapatra T (2008) Integrating marker assisted background analysis with foreground selection for identification of superior bacterial blight resistan recombinants in Basmati rice. Plant Breed 127:131–139
20. Gouda PK, Saikumar S, Varma CMK, Nagesh K, Thippeswamy S, Shenoy V, Ramesha MS, Shashidhar HE (2013) Marker-assisted breeding of Pi-1 and Piz-5 genes imparting resistance to rice blast in PRR78, restorer line of Pusa RH-10 Basmati rice hybrid. Plant Breed 132:61–69. doi:10.1111/pbr.12017
21. Gowda M, Barman SR, Chattoo BB (2006) Molecular mapping of a novel blast resistance gene Pi38 in rice using SSR and AFLP markers. Plant Breed 125:596–599
22. Hittalmani S, Parco A, Mew TV, Zeigler RS, Huang N (2000) Fine mapping and DNA marker assisted pyramiding of the three major genes for blast resistance in rice. Theor Appl Genet 100:1121–1128
23. Hospital F, Charcosset A (1997) Marker-assisted introgression of quantitative trait loci. Genetics 147:1469–1485
24. Iftekharuddaula KM, Newaz MA, Salam MA, Ahmed HU, Mahbub MAA, Septiningsih EM, Collard BCY, Sanchez DL, Pamplona AM, Mackill DJ (2011) Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into BR11, the rainfed lowland rice mega variety of Bangladesh. Euphytica 178:83–97
25. Jairin J, Teangdeerith S, Leelagud P, Kothcharerk J, Sansen K, Yi M, Vanavichit A, Toojinda T (2009) Development of rice introgression lines with brown planthopper resistance and KDML105 grain quality characteristics through marker-assisted selection. Field Crops Res 110:263–271
26. Jeung JU, Kim BR, Cho YC, Han SS, Moon HP, Lee YT, Jena KK (2007) A novel gene, Pi40(t), linked to the DNA markers derived from NBS-LRR motifs confers broad spectrum of blast resistance on rice. Theor Appl Genet 115:1163–1177
27. Jia Y (2003) Marker assisted selection for the control of rice blast disease. Pestic Outlook 14:150–152
28. Khanh TD, Linh LH, Linh TH, Ham LH, Xuan TD (2013) Rapid and high-precision marker assisted backcrossing to introgress the SUB1 QTL into the Vietnamese elite rice variety. J Plant Breed Crop Sci 5(2):26–33
29. Khush GS (2013) Strategies for increasing the yield potential of cereals: case of rice as an example. Plant Breed 132:433–436. doi:10.1111/pbr.1991
30. Koide Y, Kobayashi N, Xu D, Fukuta Y (2009) Resistance genes and selection DNA markers for blast disease in rice (Oryza sativa L.). Jpn Agric Res Q 43(4):255–280
31. Koide Y, Ebron LA, Kato H, Tsunematsu H, Telebanco-Yanoria MJ, Kobayashi N, Yokoo M, Maruyama S, Imbe T, Fukuta Y (2011) A set of near-isogenic lines for blast resistance genes with an Indica-type rainfed lowland elite rice (Oryza sativa L.) genetic background. Field Crops Res 123:19–27
32. Koizumi S (2007) Durability of resistance to rice blast disease. JIRCAS Work Rep 53:1–10
33. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12:172–175
34. Li YB, Wu CJ, Jiang GH, Wang LQ, He YQ (2007) Dynamic analysis of rice blast resistance for the as-sessment of genetic and environmental effects. Plant Breed 126:541–547
35. Liu Y, Zhu XY, Zhang S, Bernardo M, Edwards J, Galbraith DW, Leach J, Zhang G, Liu B, Leung H (2011) Dissecting quantitative resistance against blast disease using heterogeneous inbred family lines in rice. Theor Appl Genet 122(2):341–353
36. Lorieux M (2010) Map Disto genetics software. ICTA, Palmira, Columbia. Available: http://mapdisto.free.fr
37. Mackill DJ, Bonman JM (1992) Inheritance of blast resistance in near-isogenic lines of rice. Phytopathol 82:746–749
38. Maruyama K, Kikuchi F, Yokoo M (1983) Gene analysis of field resistance to rice blast (Pyricularia oryzae) in Rikuto Norin Mochi 4 and its use for breed-ing. Bull Nat Agric Sci 35:1–31
39. McCouch SR, Teytelman L, Xu Y, Lobos KB, Clare K (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res 9:257–270
40. Moniruzzaman M, Islam MS, Rashid JA, Begum SN, Islam MM (2012) Marker-assisted backcrossing for identification of salt tolerant rice lines. Int J Agril Res Innov Tech 2(2):1–8
41. Narayanan NN, Baisakh N, Cruz CM, Gnanamanickam SS, Datta K, Datta SK (2002) Molecular breeding for the development of blast and bacterial blight resistance in rice cv.IR50. Crop Sci 42:2072–2079
42. Naruoka Y, Sherman JD, Lanning SP, Blake NK, Martin JM, Talbert LE (2012) Genetic analysis of green leaf duration in spring wheat. Crop Sci 52:99–109
43. Neeraja C, Maghirang R, Pamplona A, Heuer S, Collard B, Septiningsih E (2007) A marker-assisted backcross approach for developing submergence-tolerant rice cultivars. Theor Appl Genet 115:767–776
44. Prasad MS, Aruna Kanthi B, Balachandran SM, Seshumadhav M Madhan, Mohan K, Viraktamath BC (2009) Molecular mapping of rice blast resistance gene Pi-1(t) in the elite indica variety Samba mahsuri. Wld J Microbiol Biotechnol 25:1765–1769
45. Rajpurohit D, Rahul K, Mankesh K, Priyanka P, Anjali A, Basha P, Anju P, Tripta J, Kuldeep S, Singh D (2010) Pyramiding of two bacterial blight resistance and a semidwarfing gene in Type 3 Basmati using marker-assisted selection. Euphytica 178:111–126
46. Rossman AY, Howard RJ, Valent B (1990) Pyricularia grisea, the correct name for the rice blast disease fungus. Mycologia 82:509–512
47. Sallaud C, Lorieux M, Roumen E, Tharreau D, Berruyer R, Svestasrani P, Garsmeur O, Ghesquiere A, Notteghem JL (2003) Identification of five new blast resistance genes in the highly blast-resistant rice variety IR64 using a QTL mapping strategy. Theor Appl Genet 106:794–803
48. Hari Y, Srinivasarao K, Viraktamath BC, Hari Prasad AS, Laha GS, Ahmed IM, Natarajkumar P, Sujatha K, Srinivas Prasad M, Pandey M, Ramesha MS, Neeraja CN, Balachandran SM, Rani S, Kemparaju N, Madhan Mohan B, Sama K, K VSA, Shaik H, Balachiranjeevi C, Pranathi K, Ashok Reddy G, Madhav MS, Sundaram RM (2013) Marker-assisted introgression of bacterial blight and blast resistance into IR 58025B, an elite maintainer line of rice. Plant Breed. doi: 10.1111/pbr.12056
49. Selvaraj CI, Nagarajan P, Thiyagarajan K, Bharathi M, Rabindran R (2011) Identification of microsatellite (SSR) and RAPD markers linked to rice blast disease resistance gene in Rice (Oryza sativa L.). Afr J Biotechnol 10(17):3301–3321
50. SES, IRRI (2002) Standard Evaluation System. International Rice Research Institute, Manila, pp 11–30
51. Sharma TR, Gupta SK, Vijayan J, Devanna BN, Ray S (2012) Review: rice blast management through host-plant resistance: retrospect and prospects. Agric Res 1(1):37–52
52. Sirithunya P, Tragoonrung S, Vanavichit A, Pan N, Vongsaprom C, Toojinda T (2002) Quantitative trait loci associated with leaf and neck blast resistance in recombinant inbred line population of rice (Oryza sativa). DNA Res 9:79–88
53. Sreewongchai T, Toojinda T, Thanintorn N, Kosawang C, Vanavichit A, Tharreau D, Sirithunya P (2010) Development of elite indica rice lines with wide spectrum of resistance to thai blast isolates by pyramiding multiple resistance QTLs. Plant Breed 129:176–180
54. Steele KA, Price AH, Shashidhar HE, Witcombe JR (2006) Marker-assisted selection to introgress rice QTLs controlling root traits into an Indian upland rice variety. Theor Appl Genet 112:208–221
55. Suh JP, Yang S, Jeung L, Pamplona A, Kim J, Lee J, Hong H, Yang C, Kim Y, Jena KK (2011) Development of elite breeding lines conferring Bph18 gene-derived resistance to brown planthopper (BPH) by marker-assisted selection and genome-wide background analysis in japonica rice (Oryza sativa L.). Field Crops Res 120:215–222
56. Suh JP, Jeung JU, Noh TH, Cho YC, Park SH, Park HS, Shin MS, Kim CK, Jena KK (2013) Development of breeding lines with three pyramided resistance genes that confer broad-spectrum bacterial blight resistance and their molecular analysis in rice. Rice 6:1–11
57. Sundaram RM, Vishnupriya MR, Laha GS, Shobha Rani N, SrinivasRao P, Balachandaran SM, Ashok Reddy G, Sarma NP, Shonti RV (2009) Introduction of bacterial blight resistance into Triguna, a high yielding, mid-early duration rice variety. Biotechnol J 4:400–407
58. Tharreau D, Fudal I, Andriantsimialona D, Santoso D, Utami D, Fournier E, LeBrun MH, Notteghem JL (2009) World population structure and migration of the rice blast fungus Magnaporthe oryzae. Theor Appl Genet 76:815–829
59. Thomson MJ, Polato NR, Prasetiyono J, Trijatmiko KR, Silitonga TS, McCouch SR (2009) Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.) collected in East Kalimantan on the island of Borneo. Rice 2:80–92
60. TNAU (2012) Crop Production Guide, Tamil Nadu agricultural University. agritech.tnau.ac.in/pdf/2013/CPG%20.pdf
61. Tuberosa R, Salvi S, Sanguineti MC, Landi P, Maccaferri M, Conti S (2002) Mapping QTLs regulating morpho-physiological traits and yield: case studies, shortcomings and perspectives in drought-stressed maize. Ann Bot (Lond) 89:941–963
62. Wu JL, Fan YY, Li DB, Zheng KL, Leung H, Zhuang JY (2005) Genetic control of rice blast resistance in the durably resistant cultivar Gumei 2 multiple isolates. Theor Appl Genet 111:50–56
63. Yanoria TMJ, Koide Y, Fukuta Y, Imbe T, Tsunematsu H, Kato H, Ebron L, Nguyen TN, Kobayashi N (2011) A set of near-isogenic lines of Indica-type rice variety CO 39 as differential varieties for blast resistance. Mol Breed 27:357–373
64. Yoshimura S, Yoshimura A, Iwata N, McCouch SR, Abenes ML, Baraoidan MR, Mew TW, Nelson RJ (1995) Tagging and combining bacterial blight resistance genes in rice using RAPD and RFLP markers. Mol Breed 1:375–387
65. Young ND, Tanksley SD (1989) RFLP analysis of the size of chromosomal segments retained around the tm-2 locus of tomato during backcross breeding. Theor Appl Genet 77:353–359
66. Zeigler RS, Tohme J, Nelson R, Levy M, Correa-Victoria FJ (1994) Lineage exclusion a proposal for linking blast population analysis to resistance breeding. Rice Blast Disease. CAB International. IRRI, Wallingford, pp 267–292
67. Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D (2004) Genome-wide identifica-tion of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol Genet Genomics 271:402–415